Carg13778 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg13778
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionN-(5-amino-5-carboxypentanoyl)-L-cysteinyl-D-valine synthase
LocationCarg_Chr03: 4725664 .. 4727507 (+)
RNA-Seq ExpressionCarg13778
SyntenyCarg13778
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTAATGAGTTTTTTGTTACACTCTTATCAGGTTTGGTGTATGGAAAATTGTATGGTATCACAAGGAATGTTCTAAAGACAGACATTGTCAATTTGCTTGAAGGATGTAATTTGAGTTTGGATGATGTCAAAGTTGAATACAACCGGAGTTTCACGCCAACCTCTATGTAATGTTCTTCTCTTGCTTATTTTGAATATAGATGCTTTCTGTATTAGGTTTTACCATCGTTGTTATGGTTCTATTCCTACTGCATCTTGGAAGCTAAAATAATCAAAGAATATCTAATTGCCCTTTTGATCCTTAAAGCATTAATACAAATGCAGTCCTTAAGCCTGGATTATTAGCTACATGTTAATCTATGGAATATGTGTTCAATTAAGCGCGTTGTACCTTTCTGTAAAAGGGTTAGCCTGGATTATTAGCTTCATGTTAATCTATGGAATATGCGTTCAATTAAGCGCGTTGTACCTTTCTGTAAAAGGGTTATATTTCTAAGGAGAAACCCAATTGTGTAACGTTTATGGATGTTGAGTAACACTGGTGTTCGAGGTTGGTTTTCGTTAAATATTTATGGATGTTGTAATCAGGATGATGCAATTCCCCTCCCGGAAGGCCTATGATAATGCTTTTCGAGTGATTGGAAGAAGAGGTCGCATGTACAGATTGGAGCGGGTGATGTTCTGATGGATATCTAACAAAAAATAGATTTATTTTTTTGTCTTGTTTTAAAATTTAGAAACCTATTAACTTCTATTCTAAATTTCAGGCTGATCGTTCTCAGTGGGACCTTCTTTCACCTTACAATGGAAAAACTGTAATGCCATTTTTTTTAAATTATGAACTTATTGTCCATTGAGAAATCTCTTTACCATTCATATTCTTGTTTTTGTTATTGGCATCTTTGATCAGAAAGCTATCCATTCTACTTTATATTTGTTTATCTAATATCATATGCTCGAATGGCATGGTTTCGAGGATCAAGCATACATATCAATAAGTTCTCTGCTATTCTACTGCATGATGGTTAATTTCAATGGATTGTTCCTTACATCTCCAAATTTAAAACTGATTATAGAGAAACTACTTTTTCATGTTAAACTGTTTAGAAGGGAGTAAGAAAAATGTTAGCCAAGGTCCTTGGTCTGGATCCCCCTTTAGTAGCTTCTCGAGGATATAAAACTGTTGTAACGACTTCAACTTAGAAGATTAAGGGTTTTTATTATAAGATCGTTTATAATGAAAAGATAACATGCACTGATGTGATTAGATTTTCAATTGAAACTTGATATTGCAAGATTAAGAATTGGCTATCTTTCTGGTCGTAAGTTTGTTGTTAGTAAAATCATGTGCAACTTATTGTGCAGACTGCAGTTAATAGGTGTCTCATATTAAATTTAAGCCTCTCAACATTGGATTGGTTTGGACTTTTTTCCTGTGGGATTAAATTTTCTTTGTACATACAGATCCTTCTGCAAGGAATACCTCGAAATGCAGCGCTAGATGACGTGGAGCGCTTCTTATCTGGCTGTGACTATGATGCAACCTCAATCAATATGTTTTTCAGGTAGAGATCAATTATTTGTACCAAAGTTTCATACATCAATGAAAAAAAGTAATAATAGTAAAAAAAAAAAAAAAAAAGTTCAGAATTAATATTGTAGTACTTGTAGGAATTCTGTGTGATGCATCATTTGTACATCATTGCAGGGCATCCATTCCAGAGCCCATCAGAATGGCAACAGTGCTGTTCCCTTCACCAACACAAGCAATGCATGCATTTCTTACTAAGAACAGAGGCTTTTGTCTGAACAACCAAATTTTGATGCGGGTTCTCCAATAA

mRNA sequence

ATGCCTAATGAGTTTTTTGTTACACTCTTATCAGGTTTGGTGTATGGAAAATTGTATGGTATCACAAGGAATGTTCTAAAGACAGACATTGTCAATTTGCTTGAAGGATGTAATTTGAGTTTGGATGATGTCAAAGTTGAATACAACCGGAGTTTCACGCCAACCTCTATGATGATGCAATTCCCCTCCCGGAAGGCCTATGATAATGCTTTTCGAGTGATTGGAAGAAGAGGTCGCATGTACAGATTGGAGCGGGCTGATCGTTCTCAGTGGGACCTTCTTTCACCTTACAATGGAAAAACTATCCTTCTGCAAGGAATACCTCGAAATGCAGCGCTAGATGACGTGGAGCGCTTCTTATCTGGCTGTGACTATGATGCAACCTCAATCAATATGTTTTTCAGGGCATCCATTCCAGAGCCCATCAGAATGGCAACAGTGCTGTTCCCTTCACCAACACAAGCAATGCATGCATTTCTTACTAAGAACAGAGGCTTTTGTCTGAACAACCAAATTTTGATGCGGGTTCTCCAATAA

Coding sequence (CDS)

ATGCCTAATGAGTTTTTTGTTACACTCTTATCAGGTTTGGTGTATGGAAAATTGTATGGTATCACAAGGAATGTTCTAAAGACAGACATTGTCAATTTGCTTGAAGGATGTAATTTGAGTTTGGATGATGTCAAAGTTGAATACAACCGGAGTTTCACGCCAACCTCTATGATGATGCAATTCCCCTCCCGGAAGGCCTATGATAATGCTTTTCGAGTGATTGGAAGAAGAGGTCGCATGTACAGATTGGAGCGGGCTGATCGTTCTCAGTGGGACCTTCTTTCACCTTACAATGGAAAAACTATCCTTCTGCAAGGAATACCTCGAAATGCAGCGCTAGATGACGTGGAGCGCTTCTTATCTGGCTGTGACTATGATGCAACCTCAATCAATATGTTTTTCAGGGCATCCATTCCAGAGCCCATCAGAATGGCAACAGTGCTGTTCCCTTCACCAACACAAGCAATGCATGCATTTCTTACTAAGAACAGAGGCTTTTGTCTGAACAACCAAATTTTGATGCGGGTTCTCCAATAA

Protein sequence

MPNEFFVTLLSGLVYGKLYGITRNVLKTDIVNLLEGCNLSLDDVKVEYNRSFTPTSMMMQFPSRKAYDNAFRVIGRRGRMYRLERADRSQWDLLSPYNGKTILLQGIPRNAALDDVERFLSGCDYDATSINMFFRASIPEPIRMATVLFPSPTQAMHAFLTKNRGFCLNNQILMRVLQ
Homology
BLAST of Carg13778 vs. NCBI nr
Match: KAG7033867.1 (hypothetical protein SDJN02_03592, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 363.6 bits (932), Expect = 9.6e-97
Identity = 178/178 (100.00%), Postives = 178/178 (100.00%), Query Frame = 0

Query: 1   MPNEFFVTLLSGLVYGKLYGITRNVLKTDIVNLLEGCNLSLDDVKVEYNRSFTPTSMMMQ 60
           MPNEFFVTLLSGLVYGKLYGITRNVLKTDIVNLLEGCNLSLDDVKVEYNRSFTPTSMMMQ
Sbjct: 1   MPNEFFVTLLSGLVYGKLYGITRNVLKTDIVNLLEGCNLSLDDVKVEYNRSFTPTSMMMQ 60

Query: 61  FPSRKAYDNAFRVIGRRGRMYRLERADRSQWDLLSPYNGKTILLQGIPRNAALDDVERFL 120
           FPSRKAYDNAFRVIGRRGRMYRLERADRSQWDLLSPYNGKTILLQGIPRNAALDDVERFL
Sbjct: 61  FPSRKAYDNAFRVIGRRGRMYRLERADRSQWDLLSPYNGKTILLQGIPRNAALDDVERFL 120

Query: 121 SGCDYDATSINMFFRASIPEPIRMATVLFPSPTQAMHAFLTKNRGFCLNNQILMRVLQ 179
           SGCDYDATSINMFFRASIPEPIRMATVLFPSPTQAMHAFLTKNRGFCLNNQILMRVLQ
Sbjct: 121 SGCDYDATSINMFFRASIPEPIRMATVLFPSPTQAMHAFLTKNRGFCLNNQILMRVLQ 178

BLAST of Carg13778 vs. NCBI nr
Match: XP_023544682.1 (uncharacterized protein LOC111804194 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 342.0 bits (876), Expect = 3.0e-90
Identity = 166/168 (98.81%), Postives = 168/168 (100.00%), Query Frame = 0

Query: 11  SGLVYGKLYGITRNVLKTDIVNLLEGCNLSLDDVKVEYNRSFTPTSMMMQFPSRKAYDNA 70
           +GLVYGKLYGITRNVLKTDIVNLLEGCNLSLDDVKVEYNRSFTPTSMMMQFPSRKAYDNA
Sbjct: 60  TGLVYGKLYGITRNVLKTDIVNLLEGCNLSLDDVKVEYNRSFTPTSMMMQFPSRKAYDNA 119

Query: 71  FRVIGRRGRMYRLERADRSQWDLLSPYNGKTILLQGIPRNAALDDVERFLSGCDYDATSI 130
           FRVIGRRGRMYRLERADRSQWDLLSPYNGKT+LLQGIPRNAALDDVERFLSGCDYDATSI
Sbjct: 120 FRVIGRRGRMYRLERADRSQWDLLSPYNGKTVLLQGIPRNAALDDVERFLSGCDYDATSI 179

Query: 131 NMFFRASIPEPIRMATVLFPSPTQAMHAFLTKNRGFCLNNQILMRVLQ 179
           NMFFRASIPEPIRMATVLFPSPTQAMHAFLTKNRGFCLNNQILMRVLQ
Sbjct: 180 NMFFRASIPEPIRMATVLFPSPTQAMHAFLTKNRGFCLNNQILMRVLQ 227

BLAST of Carg13778 vs. NCBI nr
Match: KAG6603690.1 (hypothetical protein SDJN03_04299, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 339.3 bits (869), Expect = 1.9e-89
Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 0

Query: 13  LVYGKLYGITRNVLKTDIVNLLEGCNLSLDDVKVEYNRSFTPTSMMMQFPSRKAYDNAFR 72
           LVYGKLYGITRNVLKTDIVNLLEGCNLSLDDVKVEYNRSFTPTSMMMQFPSRKAYDNAFR
Sbjct: 9   LVYGKLYGITRNVLKTDIVNLLEGCNLSLDDVKVEYNRSFTPTSMMMQFPSRKAYDNAFR 68

Query: 73  VIGRRGRMYRLERADRSQWDLLSPYNGKTILLQGIPRNAALDDVERFLSGCDYDATSINM 132
           VIGRRGRMYRLERADRSQWDLLSPYNGKTILLQGIPRNAALDDVERFLSGCDYDATSINM
Sbjct: 69  VIGRRGRMYRLERADRSQWDLLSPYNGKTILLQGIPRNAALDDVERFLSGCDYDATSINM 128

Query: 133 FFRASIPEPIRMATVLFPSPTQAMHAFLTKNRGFCLNNQILMRVLQ 179
           FFRASIPEPIRMATVLFPSPTQAMHAFLTKNRGFCLNNQILMRVLQ
Sbjct: 129 FFRASIPEPIRMATVLFPSPTQAMHAFLTKNRGFCLNNQILMRVLQ 174

BLAST of Carg13778 vs. NCBI nr
Match: XP_022977775.1 (uncharacterized protein LOC111477976 [Cucurbita maxima])

HSP 1 Score: 338.6 bits (867), Expect = 3.3e-89
Identity = 167/177 (94.35%), Postives = 171/177 (96.61%), Query Frame = 0

Query: 3   NEFFVTL-LSGLVYGKLYGITRNVLKTDIVNLLEGCNLSLDDVKVEYNRSFTPTSMMMQF 62
           N F  TL  +GLVYGKLYGITRNVLKTDIVNLLEGCNLSLDDVKVEYNRSFTPTSMMMQF
Sbjct: 51  NSFLDTLETAGLVYGKLYGITRNVLKTDIVNLLEGCNLSLDDVKVEYNRSFTPTSMMMQF 110

Query: 63  PSRKAYDNAFRVIGRRGRMYRLERADRSQWDLLSPYNGKTILLQGIPRNAALDDVERFLS 122
           PSRK+YDNAFRVIGRRGR+YRLERADRSQWDLLSPYNGKT+LLQGIPRNAALDDVERFLS
Sbjct: 111 PSRKSYDNAFRVIGRRGRIYRLERADRSQWDLLSPYNGKTVLLQGIPRNAALDDVERFLS 170

Query: 123 GCDYDATSINMFFRASIPEPIRMATVLFPSPTQAMHAFLTKNRGFCLNNQILMRVLQ 179
           GCDYDAT INMFFRASIPEPIRMATVLFPSPTQAMHAFLTKNRGFCLNNQILMRVLQ
Sbjct: 171 GCDYDATLINMFFRASIPEPIRMATVLFPSPTQAMHAFLTKNRGFCLNNQILMRVLQ 227

BLAST of Carg13778 vs. NCBI nr
Match: XP_022949855.1 (uncharacterized protein LOC111453126 [Cucurbita moschata])

HSP 1 Score: 337.0 bits (863), Expect = 9.6e-89
Identity = 165/168 (98.21%), Postives = 166/168 (98.81%), Query Frame = 0

Query: 11  SGLVYGKLYGITRNVLKTDIVNLLEGCNLSLDDVKVEYNRSFTPTSMMMQFPSRKAYDNA 70
           +GLVYGKLYGITRNVLKTDIVNLLEGCNLSLDDVKVEYNRSFTPTSMMMQFPS KAYDNA
Sbjct: 60  AGLVYGKLYGITRNVLKTDIVNLLEGCNLSLDDVKVEYNRSFTPTSMMMQFPSWKAYDNA 119

Query: 71  FRVIGRRGRMYRLERADRSQWDLLSPYNGKTILLQGIPRNAALDDVERFLSGCDYDATSI 130
           FRVIGRRGRMYRLERADRSQWDLLSPYNGK ILLQGIPRNAALDDVERFLSGCDYDATSI
Sbjct: 120 FRVIGRRGRMYRLERADRSQWDLLSPYNGKIILLQGIPRNAALDDVERFLSGCDYDATSI 179

Query: 131 NMFFRASIPEPIRMATVLFPSPTQAMHAFLTKNRGFCLNNQILMRVLQ 179
           NMFFRASIPEPIRMATVLFPSPTQAMHAFLTKNRGFCLNNQILMRVLQ
Sbjct: 180 NMFFRASIPEPIRMATVLFPSPTQAMHAFLTKNRGFCLNNQILMRVLQ 227

BLAST of Carg13778 vs. ExPASy TrEMBL
Match: A0A6J1INA4 (uncharacterized protein LOC111477976 OS=Cucurbita maxima OX=3661 GN=LOC111477976 PE=4 SV=1)

HSP 1 Score: 338.6 bits (867), Expect = 1.6e-89
Identity = 167/177 (94.35%), Postives = 171/177 (96.61%), Query Frame = 0

Query: 3   NEFFVTL-LSGLVYGKLYGITRNVLKTDIVNLLEGCNLSLDDVKVEYNRSFTPTSMMMQF 62
           N F  TL  +GLVYGKLYGITRNVLKTDIVNLLEGCNLSLDDVKVEYNRSFTPTSMMMQF
Sbjct: 51  NSFLDTLETAGLVYGKLYGITRNVLKTDIVNLLEGCNLSLDDVKVEYNRSFTPTSMMMQF 110

Query: 63  PSRKAYDNAFRVIGRRGRMYRLERADRSQWDLLSPYNGKTILLQGIPRNAALDDVERFLS 122
           PSRK+YDNAFRVIGRRGR+YRLERADRSQWDLLSPYNGKT+LLQGIPRNAALDDVERFLS
Sbjct: 111 PSRKSYDNAFRVIGRRGRIYRLERADRSQWDLLSPYNGKTVLLQGIPRNAALDDVERFLS 170

Query: 123 GCDYDATSINMFFRASIPEPIRMATVLFPSPTQAMHAFLTKNRGFCLNNQILMRVLQ 179
           GCDYDAT INMFFRASIPEPIRMATVLFPSPTQAMHAFLTKNRGFCLNNQILMRVLQ
Sbjct: 171 GCDYDATLINMFFRASIPEPIRMATVLFPSPTQAMHAFLTKNRGFCLNNQILMRVLQ 227

BLAST of Carg13778 vs. ExPASy TrEMBL
Match: A0A6J1GDZ1 (uncharacterized protein LOC111453126 OS=Cucurbita moschata OX=3662 GN=LOC111453126 PE=4 SV=1)

HSP 1 Score: 337.0 bits (863), Expect = 4.7e-89
Identity = 165/168 (98.21%), Postives = 166/168 (98.81%), Query Frame = 0

Query: 11  SGLVYGKLYGITRNVLKTDIVNLLEGCNLSLDDVKVEYNRSFTPTSMMMQFPSRKAYDNA 70
           +GLVYGKLYGITRNVLKTDIVNLLEGCNLSLDDVKVEYNRSFTPTSMMMQFPS KAYDNA
Sbjct: 60  AGLVYGKLYGITRNVLKTDIVNLLEGCNLSLDDVKVEYNRSFTPTSMMMQFPSWKAYDNA 119

Query: 71  FRVIGRRGRMYRLERADRSQWDLLSPYNGKTILLQGIPRNAALDDVERFLSGCDYDATSI 130
           FRVIGRRGRMYRLERADRSQWDLLSPYNGK ILLQGIPRNAALDDVERFLSGCDYDATSI
Sbjct: 120 FRVIGRRGRMYRLERADRSQWDLLSPYNGKIILLQGIPRNAALDDVERFLSGCDYDATSI 179

Query: 131 NMFFRASIPEPIRMATVLFPSPTQAMHAFLTKNRGFCLNNQILMRVLQ 179
           NMFFRASIPEPIRMATVLFPSPTQAMHAFLTKNRGFCLNNQILMRVLQ
Sbjct: 180 NMFFRASIPEPIRMATVLFPSPTQAMHAFLTKNRGFCLNNQILMRVLQ 227

BLAST of Carg13778 vs. ExPASy TrEMBL
Match: A0A6J1I6U3 (uncharacterized protein LOC111471264 OS=Cucurbita maxima OX=3661 GN=LOC111471264 PE=4 SV=1)

HSP 1 Score: 325.1 bits (832), Expect = 1.8e-85
Identity = 154/168 (91.67%), Postives = 164/168 (97.62%), Query Frame = 0

Query: 11  SGLVYGKLYGITRNVLKTDIVNLLEGCNLSLDDVKVEYNRSFTPTSMMMQFPSRKAYDNA 70
           +GLVYGKLYGITRN LKTDIVNLLEGCNL+LDDVKVEYNRSFTPTSMMMQFPSR+AYDNA
Sbjct: 60  AGLVYGKLYGITRNTLKTDIVNLLEGCNLNLDDVKVEYNRSFTPTSMMMQFPSRQAYDNA 119

Query: 71  FRVIGRRGRMYRLERADRSQWDLLSPYNGKTILLQGIPRNAALDDVERFLSGCDYDATSI 130
           FRVIGR+GR+YRLERADRSQWD+LSPYNGKT+LLQGIPRNA ++DVERFL GCDYDATSI
Sbjct: 120 FRVIGRKGRLYRLERADRSQWDILSPYNGKTVLLQGIPRNALVEDVERFLLGCDYDATSI 179

Query: 131 NMFFRASIPEPIRMATVLFPSPTQAMHAFLTKNRGFCLNNQILMRVLQ 179
           NMFFRAS PEP+RMATVLFPSPTQAMHAFLTKNRGFCLNNQILMRVLQ
Sbjct: 180 NMFFRASFPEPMRMATVLFPSPTQAMHAFLTKNRGFCLNNQILMRVLQ 227

BLAST of Carg13778 vs. ExPASy TrEMBL
Match: A0A6J1CQY2 (uncharacterized protein LOC111013764 OS=Momordica charantia OX=3673 GN=LOC111013764 PE=4 SV=1)

HSP 1 Score: 323.2 bits (827), Expect = 7.0e-85
Identity = 154/176 (87.50%), Postives = 166/176 (94.32%), Query Frame = 0

Query: 3   NEFFVTLLSGLVYGKLYGITRNVLKTDIVNLLEGCNLSLDDVKVEYNRSFTPTSMMMQFP 62
           + F  T  +GLVYGKLYGITRN LKTDIVNLLEGCNL LDDVKV+YNRSFTPTSMMMQFP
Sbjct: 53  DSFLDTSKTGLVYGKLYGITRNTLKTDIVNLLEGCNLGLDDVKVDYNRSFTPTSMMMQFP 112

Query: 63  SRKAYDNAFRVIGRRGRMYRLERADRSQWDLLSPYNGKTILLQGIPRNAALDDVERFLSG 122
           SR+AYDNA RVIGR+GR+YRLERADRSQWDLLSPYNGKT+LLQG+PRNA  +DVERFLSG
Sbjct: 113 SRQAYDNAIRVIGRKGRLYRLERADRSQWDLLSPYNGKTVLLQGLPRNAMQEDVERFLSG 172

Query: 123 CDYDATSINMFFRASIPEPIRMATVLFPSPTQAMHAFLTKNRGFCLNNQILMRVLQ 179
           C+YDATSINMFFRAS+PEP+RMATVLFPSPTQAMHAFLTKNRGFCLNNQILMRVLQ
Sbjct: 173 CNYDATSINMFFRASVPEPMRMATVLFPSPTQAMHAFLTKNRGFCLNNQILMRVLQ 228

BLAST of Carg13778 vs. ExPASy TrEMBL
Match: A0A6J1HGY5 (uncharacterized protein LOC111463377 OS=Cucurbita moschata OX=3662 GN=LOC111463377 PE=4 SV=1)

HSP 1 Score: 318.5 bits (815), Expect = 1.7e-83
Identity = 151/168 (89.88%), Postives = 163/168 (97.02%), Query Frame = 0

Query: 11  SGLVYGKLYGITRNVLKTDIVNLLEGCNLSLDDVKVEYNRSFTPTSMMMQFPSRKAYDNA 70
           +GLVYGKL GITRN LKTDIVNLLEGCNL+LDDVKVEYNRSFTPTSMMMQFPSR+AYDNA
Sbjct: 60  AGLVYGKLSGITRNTLKTDIVNLLEGCNLNLDDVKVEYNRSFTPTSMMMQFPSRQAYDNA 119

Query: 71  FRVIGRRGRMYRLERADRSQWDLLSPYNGKTILLQGIPRNAALDDVERFLSGCDYDATSI 130
           FRVIGR+GR+YRLERADRSQWD+LSPY+GKT+LLQGIPRNA ++DVERFL GCDYDATSI
Sbjct: 120 FRVIGRKGRLYRLERADRSQWDILSPYSGKTVLLQGIPRNALVEDVERFLLGCDYDATSI 179

Query: 131 NMFFRASIPEPIRMATVLFPSPTQAMHAFLTKNRGFCLNNQILMRVLQ 179
           NMFFRAS PEP+R+ATVLFPSPTQAMHAFLTKNRGFCLNNQILMRVLQ
Sbjct: 180 NMFFRASFPEPMRLATVLFPSPTQAMHAFLTKNRGFCLNNQILMRVLQ 227

BLAST of Carg13778 vs. TAIR 10
Match: AT5G02740.1 (Ribosomal protein S24e family protein )

HSP 1 Score: 173.3 bits (438), Expect = 1.7e-43
Identity = 85/169 (50.30%), Postives = 115/169 (68.05%), Query Frame = 0

Query: 12  GLVYGKLYGITRNVLKTDIVNLLEGCNLSLDDVKVEYNR--SFTPTSMMMQFPSRKAYDN 71
           G  YGK  G +++ LKTDI+N+LEGC+L+ DD+K  Y R  + TP ++ +QFPS  AYD 
Sbjct: 60  GRFYGKFSGFSKHALKTDIMNVLEGCSLTSDDLKFNYPRGGNLTPAAVFVQFPSLSAYDK 119

Query: 72  AFRVIGRRGRMYRLERADRSQWDLLSPYNGKTILLQGIPRNAALDDVERFLSGCDYDATS 131
           A R I ++G++YRLE+A R+QWD + PY GK + L GIP NA  DD++RFLSGC Y   S
Sbjct: 120 ALRNIAKKGKLYRLEKAARAQWDPIVPYEGKVVALHGIPVNAITDDIDRFLSGCLYYPGS 179

Query: 132 INMFFRASIPEPIRMATVLFPSPTQAMHAFLTKNRGFCLNNQILMRVLQ 179
           I       +    R+A V F S TQAM+A++TKNR F LN +I ++VLQ
Sbjct: 180 IQFLTVQGLGTSKRVALVRFTSQTQAMNAYITKNRNFLLNQRITLQVLQ 228

BLAST of Carg13778 vs. TAIR 10
Match: AT5G02740.2 (Ribosomal protein S24e family protein )

HSP 1 Score: 137.5 bits (345), Expect = 1.0e-32
Identity = 64/121 (52.89%), Postives = 86/121 (71.07%), Query Frame = 0

Query: 12  GLVYGKLYGITRNVLKTDIVNLLEGCNLSLDDVKVEYNR--SFTPTSMMMQFPSRKAYDN 71
           G  YGK  G +++ LKTDI+N+LEGC+L+ DD+K  Y R  + TP ++ +QFPS  AYD 
Sbjct: 60  GRFYGKFSGFSKHALKTDIMNVLEGCSLTSDDLKFNYPRGGNLTPAAVFVQFPSLSAYDK 119

Query: 72  AFRVIGRRGRMYRLERADRSQWDLLSPYNGKTILLQGIPRNAALDDVERFLSGCDYDATS 131
           A R I ++G++YRLE+A R+QWD + PY GK + L GIP NA  DD++RFLSGC Y   S
Sbjct: 120 ALRNIAKKGKLYRLEKAARAQWDPIVPYEGKVVALHGIPVNAITDDIDRFLSGCLYYPGS 179

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7033867.19.6e-97100.00hypothetical protein SDJN02_03592, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_023544682.13.0e-9098.81uncharacterized protein LOC111804194 [Cucurbita pepo subsp. pepo][more]
KAG6603690.11.9e-89100.00hypothetical protein SDJN03_04299, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022977775.13.3e-8994.35uncharacterized protein LOC111477976 [Cucurbita maxima][more]
XP_022949855.19.6e-8998.21uncharacterized protein LOC111453126 [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1INA41.6e-8994.35uncharacterized protein LOC111477976 OS=Cucurbita maxima OX=3661 GN=LOC111477976... [more]
A0A6J1GDZ14.7e-8998.21uncharacterized protein LOC111453126 OS=Cucurbita moschata OX=3662 GN=LOC1114531... [more]
A0A6J1I6U31.8e-8591.67uncharacterized protein LOC111471264 OS=Cucurbita maxima OX=3661 GN=LOC111471264... [more]
A0A6J1CQY27.0e-8587.50uncharacterized protein LOC111013764 OS=Momordica charantia OX=3673 GN=LOC111013... [more]
A0A6J1HGY51.7e-8389.88uncharacterized protein LOC111463377 OS=Cucurbita moschata OX=3662 GN=LOC1114633... [more]
Match NameE-valueIdentityDescription
AT5G02740.11.7e-4350.30Ribosomal protein S24e family protein [more]
AT5G02740.21.0e-3252.89Ribosomal protein S24e family protein [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 100..177
e-value: 5.6E-5
score: 25.0
NoneNo IPR availablePANTHERPTHR48167EXPRESSED PROTEINcoord: 4..178
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 95..172

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg13778-RACarg13778-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding