Carg13740 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg13740
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionCHCH domain-containing protein
LocationCarg_Chr03: 4916731 .. 4917482 (-)
RNA-Seq ExpressionCarg13740
SyntenyCarg13740
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TAAGCCTCGCCGTCATCTTCCTTCAATCATCTCCCGCAACAATTAACCAGAAATGATCTCACTCAAACCCTCCCCTCACCACAACGGATCCTCATTTCTCTCCAATTCTTCAAATCTTCATCAAAAACTGAGTCCAATCACTAGACATCGGTCCAATTTCCCTCCTCCATTACGCACCAAAACGACCTTCAGAATCCGCGCCGAACAGGCCGAATCAGGCAACGGCGCTCAAAGACGAACATTCTTGACGCTCGAAGAGGCCGGCCTCGTCGAAGTATCCGGCCTCAGCACGCACGAACGATTTCTGTGCCGTTTAACCGTATATCCTCTGCTTCTCTATTTCCGCTTTCACTATATTTTGCGTTCTTCAATTATTACCGAACCTGTTCTCTGTGTTGGTTTAGATCTCGTCTCTGAATTTACTGAAAGTGATAGCGGAGGAAGAGAAATGTTCTATCGAAGAGTTGAATGCGGGGAGATTATGCGACTGGTTTCTCAAGGATAAGCTGAAAAGAGAGCAGAATTTGGACTCTGCCGTTCTTCAATGGGACGATTCCGACCCTCTCTTCTGAGGTTTTCCCTTCCCTCCTCCTATCCGAGCTTTACTTCTCAGACACATGAATTTCTATTTATTTACCTGTTAACTTATTAACTTAATTGTTATTTTAACACTTTCACTTCATAATTCAAAAGTTTATGATTTTTTAAAATATAACATTGGTGTTTAAATTTTAATTAAATCGTTGTTTGTA

mRNA sequence

TAAGCCTCGCCGTCATCTTCCTTCAATCATCTCCCGCAACAATTAACCAGAAATGATCTCACTCAAACCCTCCCCTCACCACAACGGATCCTCATTTCTCTCCAATTCTTCAAATCTTCATCAAAAACTGAGTCCAATCACTAGACATCGGTCCAATTTCCCTCCTCCATTACGCACCAAAACGACCTTCAGAATCCGCGCCGAACAGGCCGAATCAGGCAACGGCGCTCAAAGACGAACATTCTTGACGCTCGAAGAGGCCGGCCTCGTCGAAGTATCCGGCCTCAGCACGCACGAACGATTTCTGTGCCGTTTAACCATCTCGTCTCTGAATTTACTGAAAGTGATAGCGGAGGAAGAGAAATGTTCTATCGAAGAGTTGAATGCGGGGAGATTATGCGACTGGTTTCTCAAGGATAAGCTGAAAAGAGAGCAGAATTTGGACTCTGCCGTTCTTCAATGGGACGATTCCGACCCTCTCTTCTGAGGTTTTCCCTTCCCTCCTCCTATCCGAGCTTTACTTCTCAGACACATGAATTTCTATTTATTTACCTGTTAACTTATTAACTTAATTGTTATTTTAACACTTTCACTTCATAATTCAAAAGTTTATGATTTTTTAAAATATAACATTGGTGTTTAAATTTTAATTAAATCGTTGTTTGTA

Coding sequence (CDS)

ATGATCTCACTCAAACCCTCCCCTCACCACAACGGATCCTCATTTCTCTCCAATTCTTCAAATCTTCATCAAAAACTGAGTCCAATCACTAGACATCGGTCCAATTTCCCTCCTCCATTACGCACCAAAACGACCTTCAGAATCCGCGCCGAACAGGCCGAATCAGGCAACGGCGCTCAAAGACGAACATTCTTGACGCTCGAAGAGGCCGGCCTCGTCGAAGTATCCGGCCTCAGCACGCACGAACGATTTCTGTGCCGTTTAACCATCTCGTCTCTGAATTTACTGAAAGTGATAGCGGAGGAAGAGAAATGTTCTATCGAAGAGTTGAATGCGGGGAGATTATGCGACTGGTTTCTCAAGGATAAGCTGAAAAGAGAGCAGAATTTGGACTCTGCCGTTCTTCAATGGGACGATTCCGACCCTCTCTTCTGA

Protein sequence

MISLKPSPHHNGSSFLSNSSNLHQKLSPITRHRSNFPPPLRTKTTFRIRAEQAESGNGAQRRTFLTLEEAGLVEVSGLSTHERFLCRLTISSLNLLKVIAEEEKCSIEELNAGRLCDWFLKDKLKREQNLDSAVLQWDDSDPLF
Homology
[Close]
BLAST of Carg13740 vs. NCBI nr
Match: XP_022949732.1 (uncharacterized protein LOC111453037 [Cucurbita moschata] >KAG6603726.1 hypothetical protein SDJN03_04335, partial [Cucurbita argyrosperma subsp. sororia] >KAG7033905.1 hypothetical protein SDJN02_03630 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 287.7 bits (735), Expect = 5.4e-74
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0 

Query: 1   MISLKPSPHHNGSSFLSNSSNLHQKLSPITRHRSNFPPPLRTKTTFRIRAEQAESGNGAQ 60
           MISLKPSPHHNGSSFLSNSSNLHQKLSPITRHRSNFPPPLRTKTTFRIRAEQAESGNGAQ
Sbjct: 1   MISLKPSPHHNGSSFLSNSSNLHQKLSPITRHRSNFPPPLRTKTTFRIRAEQAESGNGAQ 60

Query: 61  RRTFLTLEEAGLVEVSGLSTHERFLCRLTISSLNLLKVIAEEEKCSIEELNAGRLCDWFL 120
           RRTFLTLEEAGLVEVSGLSTHERFLCRLTISSLNLLKVIAEEEKCSIEELNAGRLCDWFL
Sbjct: 61  RRTFLTLEEAGLVEVSGLSTHERFLCRLTISSLNLLKVIAEEEKCSIEELNAGRLCDWFL 120

Query: 121 KDKLKREQNLDSAVLQWDDSDPLF 145
           KDKLKREQNLDSAVLQWDDSDPLF
Sbjct: 121 KDKLKREQNLDSAVLQWDDSDPLF 144

[Close]
BLAST of Carg13740 vs. NCBI nr
Match: XP_023544671.1 (uncharacterized protein LOC111804184 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 282.7 bits (722), Expect = 1.7e-72
Identity = 141/144 (97.92%), Postives = 142/144 (98.61%), Query Frame = 0 

Query: 1   MISLKPSPHHNGSSFLSNSSNLHQKLSPITRHRSNFPPPLRTKTTFRIRAEQAESGNGAQ 60
           MISLKPSPHHNGSSFL NSSNLHQKLSPITRHRSNFPPP RTKTTF+IRAEQAESGNGAQ
Sbjct: 1   MISLKPSPHHNGSSFLFNSSNLHQKLSPITRHRSNFPPPFRTKTTFKIRAEQAESGNGAQ 60

Query: 61  RRTFLTLEEAGLVEVSGLSTHERFLCRLTISSLNLLKVIAEEEKCSIEELNAGRLCDWFL 120
           RRTFLTLEEAGLVEVSGLSTHERFLCRLTISSLNLLKVIAEEEKCSIEELNAGRLCDWFL
Sbjct: 61  RRTFLTLEEAGLVEVSGLSTHERFLCRLTISSLNLLKVIAEEEKCSIEELNAGRLCDWFL 120

Query: 121 KDKLKREQNLDSAVLQWDDSDPLF 145
           KDKLKREQNLDSAVLQWDDSDPLF
Sbjct: 121 KDKLKREQNLDSAVLQWDDSDPLF 144

[Close]
BLAST of Carg13740 vs. NCBI nr
Match: XP_022977984.1 (uncharacterized protein LOC111478111 [Cucurbita maxima])

HSP 1 Score: 280.8 bits (717), Expect = 6.6e-72
Identity = 141/144 (97.92%), Postives = 142/144 (98.61%), Query Frame = 0 

Query: 1   MISLKPSPHHNGSSFLSNSSNLHQKLSPITRHRSNFPPPLRTKTTFRIRAEQAESGNGAQ 60
           MISLKPSPHHNGSSFLSNSSNLHQKL+PITR RSNFPPP RTKTTFRIRAEQAESGNGAQ
Sbjct: 1   MISLKPSPHHNGSSFLSNSSNLHQKLNPITRLRSNFPPPFRTKTTFRIRAEQAESGNGAQ 60

Query: 61  RRTFLTLEEAGLVEVSGLSTHERFLCRLTISSLNLLKVIAEEEKCSIEELNAGRLCDWFL 120
           RRTFLTLEEAGLVEVSGLSTHERFLCRLTISSLNLLKVIAEEEKCSIEELNAGRLCDWFL
Sbjct: 61  RRTFLTLEEAGLVEVSGLSTHERFLCRLTISSLNLLKVIAEEEKCSIEELNAGRLCDWFL 120

Query: 121 KDKLKREQNLDSAVLQWDDSDPLF 145
           KDKLKREQNLDSAVLQWDDSDPLF
Sbjct: 121 KDKLKREQNLDSAVLQWDDSDPLF 144

[Close]
BLAST of Carg13740 vs. NCBI nr
Match: XP_038881387.1 (uncharacterized protein LOC120072922 [Benincasa hispida])

HSP 1 Score: 231.5 bits (589), Expect = 4.6e-57
Identity = 124/147 (84.35%), Postives = 128/147 (87.07%), Query Frame = 0 

Query: 1   MISLKPSPHHNGSSFLSNSSNLHQKLSP-ITRHRSNFPPPLRTK-TTFRIRAEQA-ESGN 60
           MISL PS HHNGSSF  NSSNL Q   P I R + NF PP  TK TTFR +AEQA  SGN
Sbjct: 1   MISLNPSTHHNGSSFHYNSSNLQQNFIPTIIRIKPNFAPPFHTKTTTFRTQAEQAGSSGN 60

Query: 61  GAQRRTFLTLEEAGLVEVSGLSTHERFLCRLTISSLNLLKVIAEEEKCSIEELNAGRLCD 120
           GAQRRTFLT+EEAGLVEVSGLSTHERFLCRLTISSLNLL+VIAEEEKCSIEELNAGRLCD
Sbjct: 61  GAQRRTFLTIEEAGLVEVSGLSTHERFLCRLTISSLNLLRVIAEEEKCSIEELNAGRLCD 120

Query: 121 WFLKDKLKREQNLDSAVLQWDDSDPLF 145
           WFLKDKLKREQNLDSAVLQWDDSDPLF
Sbjct: 121 WFLKDKLKREQNLDSAVLQWDDSDPLF 147

[Close]
BLAST of Carg13740 vs. NCBI nr
Match: XP_004134733.1 (uncharacterized protein LOC101211873 [Cucumis sativus] >KGN49180.1 hypothetical protein Csa_002941 [Cucumis sativus])

HSP 1 Score: 211.1 bits (536), Expect = 6.5e-51
Identity = 115/147 (78.23%), Postives = 121/147 (82.31%), Query Frame = 0 

Query: 1   MISLKPSPHHNG--SSFLSNSSNLHQKLSPITR-HRSNFPPPLRTKTTFRIRAEQAESGN 60
           MISLKPS HHNG  +SF  NSS   Q   PI R  + NF     TKTTFR  A+ + SG 
Sbjct: 1   MISLKPSTHHNGFDTSFPYNSSKFQQNPIPIIRITKPNFS---HTKTTFRTHAQPSGSGK 60

Query: 61  GAQRRTFLTLEEAGLVEVSGLSTHERFLCRLTISSLNLLKVIAEEEKCSIEELNAGRLCD 120
           G Q+RTFLT+EEAGLVEVSGLSTHERFLCRLTISSLNLLKVIAEEEKCSIEELNAGRLCD
Sbjct: 61  GPQKRTFLTIEEAGLVEVSGLSTHERFLCRLTISSLNLLKVIAEEEKCSIEELNAGRLCD 120

Query: 121 WFLKDKLKREQNLDSAVLQWDDSDPLF 145
           WFLKDKLKREQNLDSAVLQWDDSDPLF
Sbjct: 121 WFLKDKLKREQNLDSAVLQWDDSDPLF 144

[Close]
BLAST of Carg13740 vs. ExPASy TrEMBL
Match: A0A6J1GCY7 (uncharacterized protein LOC111453037 OS=Cucurbita moschata OX=3662 GN=LOC111453037 PE=4 SV=1)

HSP 1 Score: 287.7 bits (735), Expect = 2.6e-74
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0 

Query: 1   MISLKPSPHHNGSSFLSNSSNLHQKLSPITRHRSNFPPPLRTKTTFRIRAEQAESGNGAQ 60
           MISLKPSPHHNGSSFLSNSSNLHQKLSPITRHRSNFPPPLRTKTTFRIRAEQAESGNGAQ
Sbjct: 1   MISLKPSPHHNGSSFLSNSSNLHQKLSPITRHRSNFPPPLRTKTTFRIRAEQAESGNGAQ 60

Query: 61  RRTFLTLEEAGLVEVSGLSTHERFLCRLTISSLNLLKVIAEEEKCSIEELNAGRLCDWFL 120
           RRTFLTLEEAGLVEVSGLSTHERFLCRLTISSLNLLKVIAEEEKCSIEELNAGRLCDWFL
Sbjct: 61  RRTFLTLEEAGLVEVSGLSTHERFLCRLTISSLNLLKVIAEEEKCSIEELNAGRLCDWFL 120

Query: 121 KDKLKREQNLDSAVLQWDDSDPLF 145
           KDKLKREQNLDSAVLQWDDSDPLF
Sbjct: 121 KDKLKREQNLDSAVLQWDDSDPLF 144

[Close]
BLAST of Carg13740 vs. ExPASy TrEMBL
Match: A0A6J1ISV2 (uncharacterized protein LOC111478111 OS=Cucurbita maxima OX=3661 GN=LOC111478111 PE=4 SV=1)

HSP 1 Score: 280.8 bits (717), Expect = 3.2e-72
Identity = 141/144 (97.92%), Postives = 142/144 (98.61%), Query Frame = 0 

Query: 1   MISLKPSPHHNGSSFLSNSSNLHQKLSPITRHRSNFPPPLRTKTTFRIRAEQAESGNGAQ 60
           MISLKPSPHHNGSSFLSNSSNLHQKL+PITR RSNFPPP RTKTTFRIRAEQAESGNGAQ
Sbjct: 1   MISLKPSPHHNGSSFLSNSSNLHQKLNPITRLRSNFPPPFRTKTTFRIRAEQAESGNGAQ 60

Query: 61  RRTFLTLEEAGLVEVSGLSTHERFLCRLTISSLNLLKVIAEEEKCSIEELNAGRLCDWFL 120
           RRTFLTLEEAGLVEVSGLSTHERFLCRLTISSLNLLKVIAEEEKCSIEELNAGRLCDWFL
Sbjct: 61  RRTFLTLEEAGLVEVSGLSTHERFLCRLTISSLNLLKVIAEEEKCSIEELNAGRLCDWFL 120

Query: 121 KDKLKREQNLDSAVLQWDDSDPLF 145
           KDKLKREQNLDSAVLQWDDSDPLF
Sbjct: 121 KDKLKREQNLDSAVLQWDDSDPLF 144

[Close]
BLAST of Carg13740 vs. ExPASy TrEMBL
Match: A0A0A0KHI4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G516880 PE=4 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 3.1e-51
Identity = 115/147 (78.23%), Postives = 121/147 (82.31%), Query Frame = 0 

Query: 1   MISLKPSPHHNG--SSFLSNSSNLHQKLSPITR-HRSNFPPPLRTKTTFRIRAEQAESGN 60
           MISLKPS HHNG  +SF  NSS   Q   PI R  + NF     TKTTFR  A+ + SG 
Sbjct: 1   MISLKPSTHHNGFDTSFPYNSSKFQQNPIPIIRITKPNFS---HTKTTFRTHAQPSGSGK 60

Query: 61  GAQRRTFLTLEEAGLVEVSGLSTHERFLCRLTISSLNLLKVIAEEEKCSIEELNAGRLCD 120
           G Q+RTFLT+EEAGLVEVSGLSTHERFLCRLTISSLNLLKVIAEEEKCSIEELNAGRLCD
Sbjct: 61  GPQKRTFLTIEEAGLVEVSGLSTHERFLCRLTISSLNLLKVIAEEEKCSIEELNAGRLCD 120

Query: 121 WFLKDKLKREQNLDSAVLQWDDSDPLF 145
           WFLKDKLKREQNLDSAVLQWDDSDPLF
Sbjct: 121 WFLKDKLKREQNLDSAVLQWDDSDPLF 144

[Close]
BLAST of Carg13740 vs. ExPASy TrEMBL
Match: A0A6J1CKG5 (uncharacterized protein LOC111012432 OS=Momordica charantia OX=3673 GN=LOC111012432 PE=4 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 5.2e-46
Identity = 115/153 (75.16%), Postives = 119/153 (77.78%), Query Frame = 0 

Query: 1   MISLKPSPHHNGSSFLSNSSNLHQKLSPITRHRSNFPPPLRT------KTTFR---IRAE 60
           MISL P  + NGSSF   SSNL   L PI    SNF  PL T      K  FR   +RAE
Sbjct: 1   MISLGPCAYQNGSSFPFYSSNL-LNLRPIP---SNFALPLPTNSIILGKRNFRFRVVRAE 60

Query: 61  QAESGNGAQRRTFLTLEEAGLVEVSGLSTHERFLCRLTISSLNLLKVIAEEEKCSIEELN 120
           QA  GN AQRRTFLT+EEAGLVEVSGLSTHERFLCRLTISSLNLL+VIAEEEKCSIEELN
Sbjct: 61  QA-GGNSAQRRTFLTVEEAGLVEVSGLSTHERFLCRLTISSLNLLRVIAEEEKCSIEELN 120

Query: 121 AGRLCDWFLKDKLKREQNLDSAVLQWDDSDPLF 145
           AGRLCDWFLKDKLKREQNLDSAVLQWDDSD  F
Sbjct: 121 AGRLCDWFLKDKLKREQNLDSAVLQWDDSDLTF 148

[Close]
BLAST of Carg13740 vs. ExPASy TrEMBL
Match: A0A5C7GRM7 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_026567 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 8.0e-39
Identity = 94/146 (64.38%), Postives = 113/146 (77.40%), Query Frame = 0 

Query: 1   MISLKPSPHHNGSSFLSNSSNLHQKLSPITRHRSNFPPPLRTKTTFRIRAEQAESG--NG 60
           MISLKP       SFLSN+++  QKL  IT+ ++NFP        F +RA   + G    
Sbjct: 1   MISLKPYQ----PSFLSNTTSKLQKL--ITKTQTNFPQSCFNVKKFTVRACVGQGGGEKK 60

Query: 61  AQRRTFLTLEEAGLVEVSGLSTHERFLCRLTISSLNLLKVIAEEEKCSIEELNAGRLCDW 120
            ++R+FLTLEEAGLVE+SGL+THERFLCRLTISSLNLL+VI+E+E CSIEELNAGR+CDW
Sbjct: 61  KEKRSFLTLEEAGLVEISGLTTHERFLCRLTISSLNLLRVISEQEGCSIEELNAGRVCDW 120

Query: 121 FLKDKLKREQNLDSAVLQWDDSDPLF 145
           FLKDKLKREQN+DSAVLQWDDS+  F
Sbjct: 121 FLKDKLKREQNIDSAVLQWDDSELQF 140

[Close]
BLAST of Carg13740 vs. TAIR 10
Match: AT4G21445.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast stroma; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 143.7 bits (361), Expect = 1.2e-34
Identity = 66/91 (72.53%), Postives = 81/91 (89.01%), Query Frame = 0 

Query: 51  EQAESGNGAQRRTFLTLEEAGLVEVSGLSTHERFLCRLTISSLNLLKVIAEEEKCSIEEL 110
           E+++  N  +RR+FL+L EAGLVE+SGL  HE+FLCRLTISSLNLL+VI+E+E CSIEEL
Sbjct: 61  EESDDQNKPERRSFLSLAEAGLVEISGLGAHEKFLCRLTISSLNLLRVISEQEGCSIEEL 120

Query: 111 NAGRLCDWFLKDKLKREQNLDSAVLQWDDSD 142
           NAG++CDWFLKDKLKRE N++SAVLQWDD D
Sbjct: 121 NAGKICDWFLKDKLKREHNIESAVLQWDDPD 151

The following BLAST results are available for this feature:
BLAST of Carg13740 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022949732.15.4e-74100.00uncharacterized protein LOC111453037 [Cucurbita moschata] >KAG6603726.1 hypothet... [more]
XP_023544671.11.7e-7297.92uncharacterized protein LOC111804184 [Cucurbita pepo subsp. pepo][more]
XP_022977984.16.6e-7297.92uncharacterized protein LOC111478111 [Cucurbita maxima][more]
XP_038881387.14.6e-5784.35uncharacterized protein LOC120072922 [Benincasa hispida][more]
XP_004134733.16.5e-5178.23uncharacterized protein LOC101211873 [Cucumis sativus] >KGN49180.1 hypothetical ... [more]
BLAST of Carg13740 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg13740 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1GCY72.6e-74100.00uncharacterized protein LOC111453037 OS=Cucurbita moschata OX=3662 GN=LOC1114530... [more]
A0A6J1ISV23.2e-7297.92uncharacterized protein LOC111478111 OS=Cucurbita maxima OX=3661 GN=LOC111478111... [more]
A0A0A0KHI43.1e-5178.23Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G516880 PE=4 SV=1[more]
A0A6J1CKG55.2e-4675.16uncharacterized protein LOC111012432 OS=Momordica charantia OX=3673 GN=LOC111012... [more]
A0A5C7GRM78.0e-3964.38Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_026567 PE=4 SV=1[more]
BLAST of Carg13740 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G21445.11.2e-3472.53unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR36382OSJNBA0043L09.26 PROTEINcoord: 1..142

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg13740-RACarg13740-RAmRNA