Carg13729 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg13729
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr03: 4963180 .. 4965365 (+)
RNA-Seq ExpressionCarg13729
SyntenyCarg13729
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAACTCTCTTCCTTTGGACTCAACAAGGAAACTTTACGTGCTGATAACGAAAGTGTATTGTTTTGTGGCGGTGGTGTCATGTGTAATGCTGCTGCTTTCTTAAATATGGATTTGGTAGATCACTAGTGTACTTGTAATTAGTTGCATTCATATCGAATGGGATGCCACGGGAGGCATACCAAGTGTACGGACTGCTCTGTTGCCTGTTGTTCTAAGCTTTACGAGCATTAGTGTGATTTCAAAATATATGCAGATTTTGGTGGACTGGATGGATACTTCGGTGCAGCGAAGTTATTGCGTGGTAGGGCTGTGCGTGGAGGTTTGTGGTTGGAACTTGATTATTGGGTTTTGGTTGGCGTGGCCATGGGAGGTCTGTGGATGAAGTTATGTTGTTTGTCATTTTCATACACCACATAGGGTGCAAACATGGAGCCTTCCAACTCTGTTCGTCTCTTCCAAATTTATAATCTTCATTCTTCGTCCAACCCTATCCTTTACTTTTTGCAAAAAAAGAGTTATCACCTATTTATATCGATTAGAGAAAGGAACGAATATCAGTGCGAACGTTGGATTCAGAGGGGATAGATTGTGAAATCACACGTCCGTTGGAGAAGGGAACAAACATTATTTATAAGGGTGTGAAAACCTCTCCTTAGCAGACGCGGTTTTGTAGGCTTGGGTCGTTACAAATGTTATCAGAGCAAGACACTGAGTAGTATGCCAACAAAGACGTTGGGCCTCGAAGGGGCTGGACACCGGATGGTGTACCAGCAAGGACGCTGGACCCCGAAGGGAAGTGAACACCGGGTAGTGTGGTAGTGTGCCAGCGAGGACGCTAGGTCTTGAAGGAGTGGACACTAGACAATGTGCCAACGAGAACAGTGAAGAGTCGGGGAGTGCTTCAAACCTTCCATAATTTCTTACTACATTTGACTCTATTAATTTCTTACAGTTTTTTTTGTTAGGAATGAATTCTATCAATTTAGTGTAACAAAAAAGAACCGTATCCACTTATTTTATAGTTTGATAGTTTATTGGTTGAGATTCGAGTCAAATGGGTAAATTATTGGTCAAAAAGGTTAGAAAAGTGGAGATCTATAGAAATTCTCTCTCACAGGTAGAGGCACAGAGTGGTTTCCGGGATTTGTCTATTCCATTTGGACTTCCAAAGAGAATTCAACATGGATCATTATTTGGCCCAACAGACAGAAACTGAAGGGCAATAATTTTGGCCCTTTTCCTTTGAAGGAAACAAGAAAAAGATAAGAATGAAGGGCCCACAAATGATCTATTCTGATCAAAGCAATGCCCTTCTGGTTTGTTCATTCCAAGAACAGTAGCAGAAACGGATTCAGAATTCATTCAGCTTCTTCATCACTTCATCCATTCTCAGCGCTGCAAAAAGGTGGATAGAAAGATTGAGAAGTGGTGTGGTCTTCCCCTGTTGGCAAGCAATGCTCCATTCCACATTGGTAGGCCCTCCACAAACCCATCCTTTTCTTTCCTTTTTTTTTTTTTTTTTTTTTTTCTAGTTCCATATTCCCTGTGCTTCACAAAAAGAAATGAATGAAAATAGAGCTCCACAGTACACTGATTCACACCAACTTAAGACAGAATAATGTCAAGCTTGTTTAGAGGCAATTAGTGGCCCGAATTCTGGAGGCAAGAAAGCCTAAAAGAGATGAAACAAGAAAAAAGGAGAGGGTATTGGTACTTTGTAATGATGTTATTATCAAAGCGTAAATGGGATGAAAATGAAGGGTGTGGTTTAGCAAAGACTCATGAGACGCACGCTTCAAGACAAAGGCTATCCATTCCTCTTAACCTTCTGCATTACAATCTAAAACGCTTTCCATTAGACTTAATTTCATCAACTAATTGATGTGTGGGACCCCTTTTGATCACTTACCTAAACCCTTTGTTATAAAGCTTATCAACTTAACCAAACCCAAATCTCAATCTTATTTTACTCATTCATCTGCTTTTTTCTTTTCCTAAGTTGTCTTGAATTTCAGGTCAGGGAATCTGGACACACAGAAATCTATTACTGTGGGAACAGAATATGAGGAAAGGTAGTTGTTTTCTCACTCTTTTAGAAAGTGTTTTCATTCATTGAATTGATGAATTTTGGTTAATTCAGATTGAATATTTCACCTGATGAAGAAGGGAGAGATGAAGTTTAA

mRNA sequence

ATGAAACTCTCTTCCTTTGGACTCAACAAGGAAACTTTACGTGCTGATAACGAAAGTGTATTGTTTTGTGGCGGTGGTGTCATGTGTAATGCTGCTGCTTTCTTAAATATGGATTTGATCACTAGTGTACTTGTAATTAGTTGCATTCATATCGAATGGGATGCCACGGGAGGCATACCAAGTGTACGGACTGCTCTGTTGCCTGTTGTTCTAAGCTTTACGAGCATTAATTTTGGTGGACTGGATGGATACTTCGGTGCAGCGAAGTTATTGCGTGGTAGGGCTGTGCGTGGAGGTTTGTGGTTGGAACTTGATTATTGGGTTTTGGTTGGCGTGGCCATGGGAGGAAACAAGAAAAAGATAAGAATGAAGGGCCCACAAATGATCTATTCTGATCAAAGCAATGCCCTTCTGTTCCATATTCCCTGTGCTTCACAAAAAGAAATGAATGAAAATAGAGCTCCACAGTCAGGGAATCTGGACACACAGAAATCTATTACTGTGGGAACAGAATATGAGGAAAGATTGAATATTTCACCTGATGAAGAAGGGAGAGATGAAGTTTAA

Coding sequence (CDS)

ATGAAACTCTCTTCCTTTGGACTCAACAAGGAAACTTTACGTGCTGATAACGAAAGTGTATTGTTTTGTGGCGGTGGTGTCATGTGTAATGCTGCTGCTTTCTTAAATATGGATTTGATCACTAGTGTACTTGTAATTAGTTGCATTCATATCGAATGGGATGCCACGGGAGGCATACCAAGTGTACGGACTGCTCTGTTGCCTGTTGTTCTAAGCTTTACGAGCATTAATTTTGGTGGACTGGATGGATACTTCGGTGCAGCGAAGTTATTGCGTGGTAGGGCTGTGCGTGGAGGTTTGTGGTTGGAACTTGATTATTGGGTTTTGGTTGGCGTGGCCATGGGAGGAAACAAGAAAAAGATAAGAATGAAGGGCCCACAAATGATCTATTCTGATCAAAGCAATGCCCTTCTGTTCCATATTCCCTGTGCTTCACAAAAAGAAATGAATGAAAATAGAGCTCCACAGTCAGGGAATCTGGACACACAGAAATCTATTACTGTGGGAACAGAATATGAGGAAAGATTGAATATTTCACCTGATGAAGAAGGGAGAGATGAAGTTTAA

Protein sequence

MKLSSFGLNKETLRADNESVLFCGGGVMCNAAAFLNMDLITSVLVISCIHIEWDATGGIPSVRTALLPVVLSFTSINFGGLDGYFGAAKLLRGRAVRGGLWLELDYWVLVGVAMGGNKKKIRMKGPQMIYSDQSNALLFHIPCASQKEMNENRAPQSGNLDTQKSITVGTEYEERLNISPDEEGRDEV
Homology
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BLAST of Carg13729 vs. NCBI nr
Match: KAG6603738.1 (hypothetical protein SDJN03_04347, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 129.4 bits (324), Expect = 3.2e-26
Identity = 75/122 (61.48%), Postives = 83/122 (68.03%), Query Frame = 0 

Query: 77  NFGGLDGYFGAAKLLRGRAVRGGLWLELDYWVLVGVAMG--GNKKKIRMKGPQMIYSDQS 136
           +FGGLDGYFGAAKLLRGRAVRGGLWLELDYWVLVGVAMG      +        I+S + 
Sbjct: 40  DFGGLDGYFGAAKLLRGRAVRGGLWLELDYWVLVGVAMGVAETDSEFIQLLHHFIHSQRC 99

Query: 137 NALLFHIPCASQKEMNENRAP--------QSGNLDTQKSITVGTEYEERLNISPDEEGRD 189
             +   I       +  + AP        +SGNLDTQKSITVGTEYEERLNISPDEEGRD
Sbjct: 100 KKVDRKIEKWCGLPLLASNAPFHIVVLNFRSGNLDTQKSITVGTEYEERLNISPDEEGRD 159

The following BLAST results are available for this feature:
BLAST of Carg13729 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6603738.13.2e-2661.48hypothetical protein SDJN03_04347, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Carg13729 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg13729 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg13729 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 150..172
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 150..188

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg13729-RACarg13729-RAmRNA