Carg13706 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg13706
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionPatatin
LocationCarg_Chr03: 5058929 .. 5059246 (+)
RNA-Seq ExpressionCarg13706
SyntenyCarg13706
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGGTATTGCTCCACTTGCAATTGGCACGCGAGGCACTGTGGGGTCGCTGGTGATGAAGGAGATTGAGTACTTCACCAAGTTTGAGGTGGAACGCCATGGCAGCTCTCAGAGGATAAGTGGAGATGCTTCGAGGAGAAGCGATTGTAAGGGAAGCTTTTGGCTTGTGTCCTTGACTTGGAAGTGGAAGAAGAGAAAAGGCAATAATGGGATTCTCCCCAACATTTGCAGTGCTGTTGAATTGTCAAAAAGCAATCGCTTCAATGGGATTCCTGGTTTCAGTTACAGGATTCTCAAACACGACTTTCCCATTTGA

mRNA sequence

ATGGATGGTATTGCTCCACTTGCAATTGGCACGCGAGGCACTGTGGGGTCGCTGGTGATGAAGGAGATTGAGTACTTCACCAAGTTTGAGGTGGAACGCCATGGCAGCTCTCAGAGGATAAGTGGAGATGCTTCGAGGAGAAGCGATTGTAAGGGAAGCTTTTGGCTTGTGTCCTTGACTTGGAAGTGGAAGAAGAGAAAAGGCAATAATGGGATTCTCCCCAACATTTGCAGTGCTGTTGAATTGTCAAAAAGCAATCGCTTCAATGGGATTCCTGGTTTCAGTTACAGGATTCTCAAACACGACTTTCCCATTTGA

Coding sequence (CDS)

ATGGATGGTATTGCTCCACTTGCAATTGGCACGCGAGGCACTGTGGGGTCGCTGGTGATGAAGGAGATTGAGTACTTCACCAAGTTTGAGGTGGAACGCCATGGCAGCTCTCAGAGGATAAGTGGAGATGCTTCGAGGAGAAGCGATTGTAAGGGAAGCTTTTGGCTTGTGTCCTTGACTTGGAAGTGGAAGAAGAGAAAAGGCAATAATGGGATTCTCCCCAACATTTGCAGTGCTGTTGAATTGTCAAAAAGCAATCGCTTCAATGGGATTCCTGGTTTCAGTTACAGGATTCTCAAACACGACTTTCCCATTTGA

Protein sequence

MDGIAPLAIGTRGTVGSLVMKEIEYFTKFEVERHGSSQRISGDASRRSDCKGSFWLVSLTWKWKKRKGNNGILPNICSAVELSKSNRFNGIPGFSYRILKHDFPI
Homology
BLAST of Carg13706 vs. NCBI nr
Match: XP_023544018.1 (uncharacterized protein LOC111803725 [Cucurbita pepo subsp. pepo] >KAG7033938.1 hypothetical protein SDJN02_03664, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 221.9 bits (564), Expect = 2.7e-54
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0

Query: 1   MDGIAPLAIGTRGTVGSLVMKEIEYFTKFEVERHGSSQRISGDASRRSDCKGSFWLVSLT 60
           MDGIAPLAIGTRGTVGSLVMKEIEYFTKFEVERHGSSQRISGDASRRSDCKGSFWLVSLT
Sbjct: 1   MDGIAPLAIGTRGTVGSLVMKEIEYFTKFEVERHGSSQRISGDASRRSDCKGSFWLVSLT 60

Query: 61  WKWKKRKGNNGILPNICSAVELSKSNRFNGIPGFSYRILKHDFPI 106
           WKWKKRKGNNGILPNICSAVELSKSNRFNGIPGFSYRILKHDFPI
Sbjct: 61  WKWKKRKGNNGILPNICSAVELSKSNRFNGIPGFSYRILKHDFPI 105

BLAST of Carg13706 vs. NCBI nr
Match: XP_022977336.1 (uncharacterized protein LOC111477686 [Cucurbita maxima])

HSP 1 Score: 221.9 bits (564), Expect = 2.7e-54
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0

Query: 1   MDGIAPLAIGTRGTVGSLVMKEIEYFTKFEVERHGSSQRISGDASRRSDCKGSFWLVSLT 60
           MDGIAPLAIGTRGTVGSLVMKEIEYFTKFEVERHGSSQRISGDASRRSDCKGSFWLVSLT
Sbjct: 15  MDGIAPLAIGTRGTVGSLVMKEIEYFTKFEVERHGSSQRISGDASRRSDCKGSFWLVSLT 74

Query: 61  WKWKKRKGNNGILPNICSAVELSKSNRFNGIPGFSYRILKHDFPI 106
           WKWKKRKGNNGILPNICSAVELSKSNRFNGIPGFSYRILKHDFPI
Sbjct: 75  WKWKKRKGNNGILPNICSAVELSKSNRFNGIPGFSYRILKHDFPI 119

BLAST of Carg13706 vs. NCBI nr
Match: KAG6603769.1 (hypothetical protein SDJN03_04378, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 221.9 bits (564), Expect = 2.7e-54
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0

Query: 1   MDGIAPLAIGTRGTVGSLVMKEIEYFTKFEVERHGSSQRISGDASRRSDCKGSFWLVSLT 60
           MDGIAPLAIGTRGTVGSLVMKEIEYFTKFEVERHGSSQRISGDASRRSDCKGSFWLVSLT
Sbjct: 15  MDGIAPLAIGTRGTVGSLVMKEIEYFTKFEVERHGSSQRISGDASRRSDCKGSFWLVSLT 74

Query: 61  WKWKKRKGNNGILPNICSAVELSKSNRFNGIPGFSYRILKHDFPI 106
           WKWKKRKGNNGILPNICSAVELSKSNRFNGIPGFSYRILKHDFPI
Sbjct: 75  WKWKKRKGNNGILPNICSAVELSKSNRFNGIPGFSYRILKHDFPI 119

BLAST of Carg13706 vs. NCBI nr
Match: XP_038882225.1 (uncharacterized protein LOC120073447 [Benincasa hispida])

HSP 1 Score: 193.4 bits (490), Expect = 1.0e-45
Identity = 91/105 (86.67%), Postives = 94/105 (89.52%), Query Frame = 0

Query: 1   MDGIAPLAIGTRGTVGSLVMKEIEYFTKFEVERHGSSQRISGDASRRSDCKGSFWLVSLT 60
           M G+APLAIGTRGTVGSLVMKEIEYFTK E+ERHG S  ISGDA RRSD KGSFWL+SLT
Sbjct: 15  MGGVAPLAIGTRGTVGSLVMKEIEYFTKLELERHGGSHTISGDALRRSDSKGSFWLLSLT 74

Query: 61  WKWKKRKGNNGILPNICSAVELSKSNRFNGIPGFSYRILKHDFPI 106
           WKWKKRK NNGILPNICSAVE SKSNRFNGIPGF YRILK DFPI
Sbjct: 75  WKWKKRKNNNGILPNICSAVEFSKSNRFNGIPGFGYRILKDDFPI 119

BLAST of Carg13706 vs. NCBI nr
Match: KAG6594656.1 (hypothetical protein SDJN03_11209, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 186.0 bits (471), Expect = 1.6e-43
Identity = 89/108 (82.41%), Postives = 97/108 (89.81%), Query Frame = 0

Query: 1   MDGIAPLAIGTRGTVGSLVMKEIEYFTKFEVERHGSSQRISGDASRRSDCKGSFWLVSLT 60
           M  +APLAIGTRGT+GSLVMKEIEYFTK E+ERHG SQR+SGDASRRSD K SFWL+SL+
Sbjct: 15  MGAVAPLAIGTRGTMGSLVMKEIEYFTKLELERHGGSQRLSGDASRRSDSKTSFWLLSLS 74

Query: 61  WKWKKRKGNNGILPNICSAVELSKSNRFNGIPGFSYRILKHD---FPI 106
           WKWKKR+ NNGILPNICSAVELSKSNRFNGIPGF YRILK+D   FPI
Sbjct: 75  WKWKKRRTNNGILPNICSAVELSKSNRFNGIPGFGYRILKNDVTHFPI 122

BLAST of Carg13706 vs. ExPASy TrEMBL
Match: A0A6J1IJL8 (uncharacterized protein LOC111477686 OS=Cucurbita maxima OX=3661 GN=LOC111477686 PE=4 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 1.3e-54
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0

Query: 1   MDGIAPLAIGTRGTVGSLVMKEIEYFTKFEVERHGSSQRISGDASRRSDCKGSFWLVSLT 60
           MDGIAPLAIGTRGTVGSLVMKEIEYFTKFEVERHGSSQRISGDASRRSDCKGSFWLVSLT
Sbjct: 15  MDGIAPLAIGTRGTVGSLVMKEIEYFTKFEVERHGSSQRISGDASRRSDCKGSFWLVSLT 74

Query: 61  WKWKKRKGNNGILPNICSAVELSKSNRFNGIPGFSYRILKHDFPI 106
           WKWKKRKGNNGILPNICSAVELSKSNRFNGIPGFSYRILKHDFPI
Sbjct: 75  WKWKKRKGNNGILPNICSAVELSKSNRFNGIPGFSYRILKHDFPI 119

BLAST of Carg13706 vs. ExPASy TrEMBL
Match: A0A6J1EEE9 (uncharacterized protein LOC111433571 OS=Cucurbita moschata OX=3662 GN=LOC111433571 PE=4 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 1.3e-43
Identity = 89/108 (82.41%), Postives = 96/108 (88.89%), Query Frame = 0

Query: 1   MDGIAPLAIGTRGTVGSLVMKEIEYFTKFEVERHGSSQRISGDASRRSDCKGSFWLVSLT 60
           M  +APLAIGTRGT+GSLVMKEIEYFTK E+ERHG SQR+SGDASRRSD K SFWL+SL+
Sbjct: 15  MGAVAPLAIGTRGTMGSLVMKEIEYFTKLELERHGGSQRLSGDASRRSDSKTSFWLLSLS 74

Query: 61  WKWKKRKGNNGILPNICSAVELSKSNRFNGIPGFSYRILKHD---FPI 106
           WKWKKR+ NNGILPNICSAVELSKSNRFNGIPGF YRILK D   FPI
Sbjct: 75  WKWKKRRTNNGILPNICSAVELSKSNRFNGIPGFGYRILKDDVTHFPI 122

BLAST of Carg13706 vs. ExPASy TrEMBL
Match: A0A6J1KQQ8 (uncharacterized protein LOC111497407 OS=Cucurbita maxima OX=3661 GN=LOC111497407 PE=4 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 3.0e-43
Identity = 88/108 (81.48%), Postives = 96/108 (88.89%), Query Frame = 0

Query: 1   MDGIAPLAIGTRGTVGSLVMKEIEYFTKFEVERHGSSQRISGDASRRSDCKGSFWLVSLT 60
           M  +APLAIGTRGT+GSLVMKEIEYFTK E+ERHG SQR+SGDASRRSD + SFWL+SL+
Sbjct: 15  MGAVAPLAIGTRGTMGSLVMKEIEYFTKLELERHGGSQRLSGDASRRSDSRTSFWLLSLS 74

Query: 61  WKWKKRKGNNGILPNICSAVELSKSNRFNGIPGFSYRILKHD---FPI 106
           WKWKKR+ NNGILPNICSAVELSKSNRFNGIPGF YRILK D   FPI
Sbjct: 75  WKWKKRRTNNGILPNICSAVELSKSNRFNGIPGFGYRILKDDITHFPI 122

BLAST of Carg13706 vs. ExPASy TrEMBL
Match: A0A0A0KL84 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G514830 PE=4 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 3.9e-43
Identity = 86/102 (84.31%), Postives = 92/102 (90.20%), Query Frame = 0

Query: 4   IAPLAIGTRGTVGSLVMKEIEYFTKFEVERHGSSQRISGDASRRSDCKGSFWLVSLTWKW 63
           +APLAIGTRGTVGSLVMKEIEYFTK E+ERHG S  ISG+A RRSD +GSFWL+SLTWKW
Sbjct: 19  VAPLAIGTRGTVGSLVMKEIEYFTKLELERHGISHTISGNALRRSDSRGSFWLLSLTWKW 78

Query: 64  KKRKGNNGILPNICSAVELSKSNRFNGIPGFSYRILKHDFPI 106
           KKRKGNNG+LPNI SAVE SKSNRFNGIPGF YRILK DFPI
Sbjct: 79  KKRKGNNGVLPNISSAVEFSKSNRFNGIPGFGYRILKDDFPI 120

BLAST of Carg13706 vs. ExPASy TrEMBL
Match: A0A5D3CRM5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G006580 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 1.9e-42
Identity = 86/102 (84.31%), Postives = 90/102 (88.24%), Query Frame = 0

Query: 4   IAPLAIGTRGTVGSLVMKEIEYFTKFEVERHGSSQRISGDASRRSDCKGSFWLVSLTWKW 63
           +APLAIGTRGTVGSLVMKEIEYFT  E+ERHGSS  I G+A RRSD KGSFWL+SLTWKW
Sbjct: 19  VAPLAIGTRGTVGSLVMKEIEYFTNLELERHGSSHTIRGNALRRSDSKGSFWLLSLTWKW 78

Query: 64  KKRKGNNGILPNICSAVELSKSNRFNGIPGFSYRILKHDFPI 106
           KKRK NNGILPNI SAVE SKSNRFNGIPGF YRILK DFPI
Sbjct: 79  KKRKNNNGILPNISSAVEFSKSNRFNGIPGFGYRILKDDFPI 120

BLAST of Carg13706 vs. TAIR 10
Match: AT4G21780.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 83.6 bits (205), Expect = 1.1e-16
Identity = 48/109 (44.04%), Postives = 62/109 (56.88%), Query Frame = 0

Query: 5   APLAIGTRGTVGSLVMKEIEYFTKFEV------ERHGSSQRISGDASR--RSDCKGSFWL 64
           AP+AIGTRGT+GSLV KEI+YF  F         R G+S+       +  RS  +   W 
Sbjct: 3   APIAIGTRGTIGSLVRKEIDYFKNFSTCHPQFDPRRGNSEENKNTFKQRDRSSSRLGSWF 62

Query: 65  VSLTWKWKKRK---GNNGILPNICSAVELSKSNRFNGIPGFSYRILKHD 103
               W+ KKR+   G     P++CSAVE+S  NR   +PGF+YRILK D
Sbjct: 63  SKTKWRKKKRQTRGGGGKFFPSMCSAVEVSGENR---VPGFNYRILKSD 108

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_023544018.12.7e-54100.00uncharacterized protein LOC111803725 [Cucurbita pepo subsp. pepo] >KAG7033938.1 ... [more]
XP_022977336.12.7e-54100.00uncharacterized protein LOC111477686 [Cucurbita maxima][more]
KAG6603769.12.7e-54100.00hypothetical protein SDJN03_04378, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_038882225.11.0e-4586.67uncharacterized protein LOC120073447 [Benincasa hispida][more]
KAG6594656.11.6e-4382.41hypothetical protein SDJN03_11209, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1IJL81.3e-54100.00uncharacterized protein LOC111477686 OS=Cucurbita maxima OX=3661 GN=LOC111477686... [more]
A0A6J1EEE91.3e-4382.41uncharacterized protein LOC111433571 OS=Cucurbita moschata OX=3662 GN=LOC1114335... [more]
A0A6J1KQQ83.0e-4381.48uncharacterized protein LOC111497407 OS=Cucurbita maxima OX=3661 GN=LOC111497407... [more]
A0A0A0KL843.9e-4384.31Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G514830 PE=4 SV=1[more]
A0A5D3CRM51.9e-4284.31Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
AT4G21780.11.1e-1644.04unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -... [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35131:SF1EXPRESSED PROTEINcoord: 3..102
NoneNo IPR availablePANTHERPTHR35131EXPRESSED PROTEINcoord: 3..102

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg13706-RACarg13706-RAmRNA