Carg13702 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg13702
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Derlin
Location	Carg_Chr03: 5063224 .. 5064382 (-)
RNA-Seq Expression	Carg13702
Synteny	Carg13702

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTCTGTTATTGCCAGATTTGGATTTTTTGTTTCACATGTTTTTTCTTGCCCGATACTGCAAACTTCTGGAAGAAAACTCTTTTAGGGGAAGAACAGCTGATTTCTTTTATATGCTCTTATTTGGGGCCACGGTGCTAACTGCAATTGTTTTGGTTGGGGGAATGATACCGTACTTGTCCGAGTCAATTGCTGAAGTTATATTCCTTAGCAACTCTCTGACGTTCATGATGGTTAGTTTCCATCTAATATGAGAGCTATTGTCTCATTATTTTCATGCAATTCAGCTTTTTACTTTAACAAATCTTCTTATACACAGGTTTATGTGTGGAGCAAGCAAAATCCGTTCATTCATATGAGCTTTTTGGGCCTCTTTACTTTTACAGCAGCTTACCTGCCATGGGTGAGTAAGCCTGGGTTTCTTTGCATATTATTATTCTTTCAGTCATCCTGAAGTTGAAAATTTGTCTATGACTAGATCCCATCCAATGTTAATTCCTTTCAGTTGAATTCTCTATTCACCAGTAAAAGCATCACCTAAACTTCACGATAGAATATTAACTTTGTTTCTTTTCCTTTTTCCTGCACAGGTTCTATTAGGGTTCTCTGTACTTGTCGGGGCCAGTGCATGGGTAGATCTACTGGTATGCTGTTTGACTCTGCATTTGGAATATAATTCTTCACAGTTGGTTATGTTTGATCCGACACTCATTAGGTTTGCATAGTTCAATATTTTCTTAACCTGGAGTCTCCCGATACTGGTATTTTAAAACATTTTAGTACGGCTAAAGTATGATATGTAATTACAAACAAACAGCAAAATAAATCAATTTCCCTCGCATTGATTGTTTACGGAAATTGTTGGGTAGTTGAGGCCAGGAATATTAGTCCGTGGTTTTTTTTTTTTTATTAGCACGAATTGCTTTAAATTAATGTAACCTTTTCCCTATGGAAACGAATTCTTTTGTGACTCAGGGTATGGTTGCTGGTCACGCTTATTATTTTCTTGAAGACGTGTACCCACGAATGACAGGCCGTCGACCGTTGAAAACTCCATCCTTTATCAGGGCCTTATTTGCTGATGAAGCAGTTGTAGTGGCACGGCCCGTGGATTTGAGATTTGCAGCACCTGCTGTTGAGGATATTCATCAAGATTAG

mRNA sequence

ATGTGTCTGTTATTGCCAGATTTGGATTTTTTGTTTCACATGTTTTTTCTTGCCCGATACTGCAAACTTCTGGAAGAAAACTCTTTTAGGGGAAGAACAGCTGATTTCTTTTATATGCTCTTATTTGGGGCCACGGTGCTAACTGCAATTGTTTTGGTTGGGGGAATGATACCGTACTTGTCCGAGTCAATTGCTGAAGTTATATTCCTTAGCAACTCTCTGACGTTCATGATGGTTTATGTGTGGAGCAAGCAAAATCCGTTCATTCATATGAGCTTTTTGGGCCTCTTTACTTTTACAGCAGCTTACCTGCCATGGGTTCTATTAGGGTTCTCTGTACTTGTCGGGGCCAGTGCATGGGTAGATCTACTGGGTATGGTTGCTGGTCACGCTTATTATTTTCTTGAAGACGTGTACCCACGAATGACAGGCCGTCGACCGTTGAAAACTCCATCCTTTATCAGGGCCTTATTTGCTGATGAAGCAGTTGTAGTGGCACGGCCCGTGGATTTGAGATTTGCAGCACCTGCTGTTGAGGATATTCATCAAGATTAG

Coding sequence (CDS)

ATGTGTCTGTTATTGCCAGATTTGGATTTTTTGTTTCACATGTTTTTTCTTGCCCGATACTGCAAACTTCTGGAAGAAAACTCTTTTAGGGGAAGAACAGCTGATTTCTTTTATATGCTCTTATTTGGGGCCACGGTGCTAACTGCAATTGTTTTGGTTGGGGGAATGATACCGTACTTGTCCGAGTCAATTGCTGAAGTTATATTCCTTAGCAACTCTCTGACGTTCATGATGGTTTATGTGTGGAGCAAGCAAAATCCGTTCATTCATATGAGCTTTTTGGGCCTCTTTACTTTTACAGCAGCTTACCTGCCATGGGTTCTATTAGGGTTCTCTGTACTTGTCGGGGCCAGTGCATGGGTAGATCTACTGGGTATGGTTGCTGGTCACGCTTATTATTTTCTTGAAGACGTGTACCCACGAATGACAGGCCGTCGACCGTTGAAAACTCCATCCTTTATCAGGGCCTTATTTGCTGATGAAGCAGTTGTAGTGGCACGGCCCGTGGATTTGAGATTTGCAGCACCTGCTGTTGAGGATATTCATCAAGATTAG

Protein sequence

MCLLLPDLDFLFHMFFLARYCKLLEENSFRGRTADFFYMLLFGATVLTAIVLVGGMIPYLSESIAEVIFLSNSLTFMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVLVGASAWVDLLGMVAGHAYYFLEDVYPRMTGRRPLKTPSFIRALFADEAVVVARPVDLRFAAPAVEDIHQD

Homology

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BLAST of Carg13702 vs. NCBI nr
Match: KAG7033942.1 (Derlin-2.2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 362.1 bits (928), Expect = 2.9e-96
Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 0


Query: 1   MCLLLPDLDFLFHMFFLARYCKLLEENSFRGRTADFFYMLLFGATVLTAIVLVGGMIPYL 60
           MCLLLPDLDFLFHMFFLARYCKLLEENSFRGRTADFFYMLLFGATVLTAIVLVGGMIPYL
Sbjct: 1   MCLLLPDLDFLFHMFFLARYCKLLEENSFRGRTADFFYMLLFGATVLTAIVLVGGMIPYL 60

Query: 61  SESIAEVIFLSNSLTFMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVLVGASAW 120
           SESIAEVIFLSNSLTFMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVLVGASAW
Sbjct: 61  SESIAEVIFLSNSLTFMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVLVGASAW 120

Query: 121 VDLLGMVAGHAYYFLEDVYPRMTGRRPLKTPSFIRALFADEAVVVARPVDLRFAAPAVED 180
           VDLLGMVAGHAYYFLEDVYPRMTGRRPLKTPSFIRALFADEAVVVARPVDLRFAAPAVED
Sbjct: 121 VDLLGMVAGHAYYFLEDVYPRMTGRRPLKTPSFIRALFADEAVVVARPVDLRFAAPAVED 180

Query: 181 IHQD 185
           IHQD
Sbjct: 181 IHQD 184

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BLAST of Carg13702 vs. NCBI nr
Match: KAG6603771.1 (Derlin-2.2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 350.9 bits (899), Expect = 6.7e-93
Identity = 178/178 (100.00%), Postives = 178/178 (100.00%), Query Frame = 0


Query: 7   DLDFLFHMFFLARYCKLLEENSFRGRTADFFYMLLFGATVLTAIVLVGGMIPYLSESIAE 66
           DLDFLFHMFFLARYCKLLEENSFRGRTADFFYMLLFGATVLTAIVLVGGMIPYLSESIAE
Sbjct: 56  DLDFLFHMFFLARYCKLLEENSFRGRTADFFYMLLFGATVLTAIVLVGGMIPYLSESIAE 115

Query: 67  VIFLSNSLTFMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVLVGASAWVDLLGM 126
           VIFLSNSLTFMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVLVGASAWVDLLGM
Sbjct: 116 VIFLSNSLTFMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVLVGASAWVDLLGM 175

Query: 127 VAGHAYYFLEDVYPRMTGRRPLKTPSFIRALFADEAVVVARPVDLRFAAPAVEDIHQD 185
           VAGHAYYFLEDVYPRMTGRRPLKTPSFIRALFADEAVVVARPVDLRFAAPAVEDIHQD
Sbjct: 176 VAGHAYYFLEDVYPRMTGRRPLKTPSFIRALFADEAVVVARPVDLRFAAPAVEDIHQD 233

[Close]

BLAST of Carg13702 vs. NCBI nr
Match: XP_022950204.1 (derlin-2.2 [Cucurbita moschata] >XP_022977725.1 derlin-2.2 [Cucurbita maxima] >XP_023544056.1 derlin-2.2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 350.9 bits (899), Expect = 6.7e-93
Identity = 178/178 (100.00%), Postives = 178/178 (100.00%), Query Frame = 0


Query: 7   DLDFLFHMFFLARYCKLLEENSFRGRTADFFYMLLFGATVLTAIVLVGGMIPYLSESIAE 66
           DLDFLFHMFFLARYCKLLEENSFRGRTADFFYMLLFGATVLTAIVLVGGMIPYLSESIAE
Sbjct: 67  DLDFLFHMFFLARYCKLLEENSFRGRTADFFYMLLFGATVLTAIVLVGGMIPYLSESIAE 126

Query: 67  VIFLSNSLTFMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVLVGASAWVDLLGM 126
           VIFLSNSLTFMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVLVGASAWVDLLGM
Sbjct: 127 VIFLSNSLTFMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVLVGASAWVDLLGM 186

Query: 127 VAGHAYYFLEDVYPRMTGRRPLKTPSFIRALFADEAVVVARPVDLRFAAPAVEDIHQD 185
           VAGHAYYFLEDVYPRMTGRRPLKTPSFIRALFADEAVVVARPVDLRFAAPAVEDIHQD
Sbjct: 187 VAGHAYYFLEDVYPRMTGRRPLKTPSFIRALFADEAVVVARPVDLRFAAPAVEDIHQD 244

[Close]

BLAST of Carg13702 vs. NCBI nr
Match: XP_038882799.1 (derlin-2.2 [Benincasa hispida])

HSP 1 Score: 346.7 bits (888), Expect = 1.3e-91
Identity = 175/178 (98.31%), Postives = 176/178 (98.88%), Query Frame = 0


Query: 7   DLDFLFHMFFLARYCKLLEENSFRGRTADFFYMLLFGATVLTAIVLVGGMIPYLSESIAE 66
           DLDFLFHMFFLARYCKLLEENSFRGRTADFFYMLLFGATVLT IVLVGGMIPYLSESIAE
Sbjct: 67  DLDFLFHMFFLARYCKLLEENSFRGRTADFFYMLLFGATVLTGIVLVGGMIPYLSESIAE 126

Query: 67  VIFLSNSLTFMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVLVGASAWVDLLGM 126
           VIFLSNSLTFMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVLVGASAWVDLLGM
Sbjct: 127 VIFLSNSLTFMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVLVGASAWVDLLGM 186

Query: 127 VAGHAYYFLEDVYPRMTGRRPLKTPSFIRALFADEAVVVARPVDLRFAAPAVEDIHQD 185
           VAGHAYYFLEDVYPRMTGRRPLKTPSFI+ALFADEAVVVARPVDLRFAAPA EDIHQD
Sbjct: 187 VAGHAYYFLEDVYPRMTGRRPLKTPSFIKALFADEAVVVARPVDLRFAAPAAEDIHQD 244

[Close]

BLAST of Carg13702 vs. NCBI nr
Match: XP_008439977.1 (PREDICTED: derlin-2.2 [Cucumis melo] >TYK13054.1 derlin-2.2 [Cucumis melo var. makuwa])

HSP 1 Score: 345.1 bits (884), Expect = 3.7e-91
Identity = 174/178 (97.75%), Postives = 175/178 (98.31%), Query Frame = 0


Query: 7   DLDFLFHMFFLARYCKLLEENSFRGRTADFFYMLLFGATVLTAIVLVGGMIPYLSESIAE 66
           DLDFLFHMFFLARYCKLLEENSFRGRTADFFYMLLFGATVLT IVLVGGMIPYLSESIAE
Sbjct: 67  DLDFLFHMFFLARYCKLLEENSFRGRTADFFYMLLFGATVLTGIVLVGGMIPYLSESIAE 126

Query: 67  VIFLSNSLTFMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVLVGASAWVDLLGM 126
           VIFLSNSLTFMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVLVGASAWVDLLGM
Sbjct: 127 VIFLSNSLTFMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVLVGASAWVDLLGM 186

Query: 127 VAGHAYYFLEDVYPRMTGRRPLKTPSFIRALFADEAVVVARPVDLRFAAPAVEDIHQD 185
           VAGHAYYFLEDVYPRMTGRRPLKTPSFI+ALFADEAVVVARP DLRFAAPA EDIHQD
Sbjct: 187 VAGHAYYFLEDVYPRMTGRRPLKTPSFIKALFADEAVVVARPADLRFAAPAAEDIHQD 244

[Close]

BLAST of Carg13702 vs. ExPASy Swiss-Prot
Match: Q9ZS88 (Derlin-2.2 OS=Arabidopsis thaliana OX=3702 GN=DER2.2 PE=2 SV=1)

HSP 1 Score: 312.4 bits (799), Expect = 3.4e-84
Identity = 152/178 (85.39%), Postives = 167/178 (93.82%), Query Frame = 0


Query: 7   DLDFLFHMFFLARYCKLLEENSFRGRTADFFYMLLFGATVLTAIVLVGGMIPYLSESIAE 66
           DLDF+FHMFFLARYCKLLEENSFRG+TADF YMLLFGA+VLT IVL+GGMIPYLS S A+
Sbjct: 67  DLDFMFHMFFLARYCKLLEENSFRGKTADFLYMLLFGASVLTGIVLIGGMIPYLSASFAK 126

Query: 67  VIFLSNSLTFMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVLVGASAWVDLLGM 126
           +IFLSNSLTFMMVYVWSKQNP+IHMSFLGLFTFTAAYLPWVLLGFS+LVGASAWVDLLGM
Sbjct: 127 IIFLSNSLTFMMVYVWSKQNPYIHMSFLGLFTFTAAYLPWVLLGFSILVGASAWVDLLGM 186

Query: 127 VAGHAYYFLEDVYPRMTGRRPLKTPSFIRALFADEAVVVARPVDLRFAAPAVEDIHQD 185
           +AGHAYYFL +VYPRMT RRPLKTPSF++ALFADE VVVARP D+RFAA   ++IHQD
Sbjct: 187 IAGHAYYFLAEVYPRMTNRRPLKTPSFLKALFADEPVVVARPEDVRFAAAPFDEIHQD 244

[Close]

BLAST of Carg13702 vs. ExPASy Swiss-Prot
Match: Q8VZ96 (Derlin-2.1 OS=Arabidopsis thaliana OX=3702 GN=DER2.1 PE=2 SV=3)

HSP 1 Score: 303.9 bits (777), Expect = 1.2e-81
Identity = 149/178 (83.71%), Postives = 163/178 (91.57%), Query Frame = 0


Query: 7   DLDFLFHMFFLARYCKLLEENSFRGRTADFFYMLLFGATVLTAIVLVGGMIPYLSESIAE 66
           DLDFLFHMFFLARYCKLLEENSFRG+TADF YMLLFGATVLT IVL+GGMIPYLS S ++
Sbjct: 67  DLDFLFHMFFLARYCKLLEENSFRGKTADFLYMLLFGATVLTGIVLIGGMIPYLSVSFSK 126

Query: 67  VIFLSNSLTFMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVLVGASAWVDLLGM 126
           +IFLSNSLTFMMVYVWSKQNP+IHMSFLGLFTFTAAYLPWVLLGFS+LVGASAW D LGM
Sbjct: 127 IIFLSNSLTFMMVYVWSKQNPYIHMSFLGLFTFTAAYLPWVLLGFSILVGASAWGDFLGM 186

Query: 127 VAGHAYYFLEDVYPRMTGRRPLKTPSFIRALFADEAVVVARPVDLRFAAPAVEDIHQD 185
           +AGHAYYFL  VYPRMT RRPLKTPSF++ALFADE VV+ARP D+RFA    ++IHQD
Sbjct: 187 IAGHAYYFLAFVYPRMTDRRPLKTPSFLKALFADEPVVIARPEDVRFAHAPFDEIHQD 244

[Close]

BLAST of Carg13702 vs. ExPASy Swiss-Prot
Match: Q851X7 (Derlin-2 OS=Oryza sativa subsp. japonica OX=39947 GN=DER2 PE=2 SV=1)

HSP 1 Score: 300.4 bits (768), Expect = 1.4e-80
Identity = 147/171 (85.96%), Postives = 158/171 (92.40%), Query Frame = 0


Query: 7   DLDFLFHMFFLARYCKLLEENSFRGRTADFFYMLLFGATVLTAIVLVGGMIPYLSESIAE 66
           DLDFLFHMFFLARYCKLLEENSFRGRTADFFYMLLFGATVLT IVL+GGMIPY+SE+ A 
Sbjct: 67  DLDFLFHMFFLARYCKLLEENSFRGRTADFFYMLLFGATVLTGIVLIGGMIPYISETFAR 126

Query: 67  VIFLSNSLTFMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVLVGASAWVDLLGM 126
           ++FLSNSLTFMMVYVWSK NPFIHMSFLGLFTFTAAYLPWVLLGFS+LVG+S WVDLLGM
Sbjct: 127 ILFLSNSLTFMMVYVWSKHNPFIHMSFLGLFTFTAAYLPWVLLGFSILVGSSTWVDLLGM 186

Query: 127 VAGHAYYFLEDVYPRMTGRRPLKTPSFIRALFADEAVVVARPVDLRFAAPA 178
           +AGH YYFLEDVYPRMTGRRPLKTPSFI+ALFAD+ VVVARP +    A A
Sbjct: 187 IAGHVYYFLEDVYPRMTGRRPLKTPSFIKALFADDNVVVARPPNAGLGAGA 237

[Close]

BLAST of Carg13702 vs. ExPASy Swiss-Prot
Match: Q4G2J4 (Derlin-2.1 OS=Zea mays OX=4577 GN=DER2.1 PE=2 SV=2)

HSP 1 Score: 299.3 bits (765), Expect = 3.0e-80
Identity = 146/171 (85.38%), Postives = 159/171 (92.98%), Query Frame = 0


Query: 7   DLDFLFHMFFLARYCKLLEENSFRGRTADFFYMLLFGATVLTAIVLVGGMIPYLSESIAE 66
           DLDFLFHMFFLARYCKLLEENSFRGRTADFFYMLLFGATVLT+IVL+GGMIPY+SE+ A 
Sbjct: 67  DLDFLFHMFFLARYCKLLEENSFRGRTADFFYMLLFGATVLTSIVLIGGMIPYISETFAR 126

Query: 67  VIFLSNSLTFMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVLVGASAWVDLLGM 126
           ++FLSNSLTFMMVYVWSK NPFIHMSFLGLFTFTAAYLPWVLLGFS+LVG+S WVDLLGM
Sbjct: 127 ILFLSNSLTFMMVYVWSKHNPFIHMSFLGLFTFTAAYLPWVLLGFSILVGSSTWVDLLGM 186

Query: 127 VAGHAYYFLEDVYPRMTGRRPLKTPSFIRALFADEAVVVARPVDLRFAAPA 178
           +AGH YYFLEDVYPRMTGRRPLKTPSFI+ALFAD+ VVVA+P +    A A
Sbjct: 187 IAGHVYYFLEDVYPRMTGRRPLKTPSFIKALFADDNVVVAQPPNAGIGAGA 237

[Close]

BLAST of Carg13702 vs. ExPASy Swiss-Prot
Match: Q4G2J3 (Derlin-2.2 OS=Zea mays OX=4577 GN=DER2.2 PE=2 SV=1)

HSP 1 Score: 298.9 bits (764), Expect = 3.9e-80
Identity = 146/171 (85.38%), Postives = 158/171 (92.40%), Query Frame = 0


Query: 7   DLDFLFHMFFLARYCKLLEENSFRGRTADFFYMLLFGATVLTAIVLVGGMIPYLSESIAE 66
           DLDFLFHMFFLARYCKLLEENSFRGRTADFFYMLLFGATVLT IVL+GGMIPY+SE+ A 
Sbjct: 67  DLDFLFHMFFLARYCKLLEENSFRGRTADFFYMLLFGATVLTGIVLIGGMIPYISETFAR 126

Query: 67  VIFLSNSLTFMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVLVGASAWVDLLGM 126
           ++FLSNSLTFMMVYVWSK NPFIHMSFLGLFTFTAAYLPWVLLGFS+LVG+S WVDLLGM
Sbjct: 127 ILFLSNSLTFMMVYVWSKHNPFIHMSFLGLFTFTAAYLPWVLLGFSILVGSSTWVDLLGM 186

Query: 127 VAGHAYYFLEDVYPRMTGRRPLKTPSFIRALFADEAVVVARPVDLRFAAPA 178
           +AGH YYFLEDVYPRMTGRRPLKTPSFI+ALFAD+ VVVA+P +    A A
Sbjct: 187 IAGHVYYFLEDVYPRMTGRRPLKTPSFIKALFADDNVVVAQPPNAGIGAGA 237

[Close]

BLAST of Carg13702 vs. ExPASy TrEMBL
Match: A0A6J1IN59 (Derlin OS=Cucurbita maxima OX=3661 GN=LOC111477949 PE=3 SV=1)

HSP 1 Score: 350.9 bits (899), Expect = 3.2e-93
Identity = 178/178 (100.00%), Postives = 178/178 (100.00%), Query Frame = 0


Query: 7   DLDFLFHMFFLARYCKLLEENSFRGRTADFFYMLLFGATVLTAIVLVGGMIPYLSESIAE 66
           DLDFLFHMFFLARYCKLLEENSFRGRTADFFYMLLFGATVLTAIVLVGGMIPYLSESIAE
Sbjct: 67  DLDFLFHMFFLARYCKLLEENSFRGRTADFFYMLLFGATVLTAIVLVGGMIPYLSESIAE 126

Query: 67  VIFLSNSLTFMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVLVGASAWVDLLGM 126
           VIFLSNSLTFMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVLVGASAWVDLLGM
Sbjct: 127 VIFLSNSLTFMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVLVGASAWVDLLGM 186

Query: 127 VAGHAYYFLEDVYPRMTGRRPLKTPSFIRALFADEAVVVARPVDLRFAAPAVEDIHQD 185
           VAGHAYYFLEDVYPRMTGRRPLKTPSFIRALFADEAVVVARPVDLRFAAPAVEDIHQD
Sbjct: 187 VAGHAYYFLEDVYPRMTGRRPLKTPSFIRALFADEAVVVARPVDLRFAAPAVEDIHQD 244

[Close]

BLAST of Carg13702 vs. ExPASy TrEMBL
Match: A0A6J1GF48 (Derlin OS=Cucurbita moschata OX=3662 GN=LOC111453368 PE=3 SV=1)

HSP 1 Score: 350.9 bits (899), Expect = 3.2e-93
Identity = 178/178 (100.00%), Postives = 178/178 (100.00%), Query Frame = 0


Query: 7   DLDFLFHMFFLARYCKLLEENSFRGRTADFFYMLLFGATVLTAIVLVGGMIPYLSESIAE 66
           DLDFLFHMFFLARYCKLLEENSFRGRTADFFYMLLFGATVLTAIVLVGGMIPYLSESIAE
Sbjct: 67  DLDFLFHMFFLARYCKLLEENSFRGRTADFFYMLLFGATVLTAIVLVGGMIPYLSESIAE 126

Query: 67  VIFLSNSLTFMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVLVGASAWVDLLGM 126
           VIFLSNSLTFMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVLVGASAWVDLLGM
Sbjct: 127 VIFLSNSLTFMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVLVGASAWVDLLGM 186

Query: 127 VAGHAYYFLEDVYPRMTGRRPLKTPSFIRALFADEAVVVARPVDLRFAAPAVEDIHQD 185
           VAGHAYYFLEDVYPRMTGRRPLKTPSFIRALFADEAVVVARPVDLRFAAPAVEDIHQD
Sbjct: 187 VAGHAYYFLEDVYPRMTGRRPLKTPSFIRALFADEAVVVARPVDLRFAAPAVEDIHQD 244

[Close]

BLAST of Carg13702 vs. ExPASy TrEMBL
Match: A0A5D3CPU8 (Derlin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G006560 PE=3 SV=1)

HSP 1 Score: 345.1 bits (884), Expect = 1.8e-91
Identity = 174/178 (97.75%), Postives = 175/178 (98.31%), Query Frame = 0


Query: 7   DLDFLFHMFFLARYCKLLEENSFRGRTADFFYMLLFGATVLTAIVLVGGMIPYLSESIAE 66
           DLDFLFHMFFLARYCKLLEENSFRGRTADFFYMLLFGATVLT IVLVGGMIPYLSESIAE
Sbjct: 67  DLDFLFHMFFLARYCKLLEENSFRGRTADFFYMLLFGATVLTGIVLVGGMIPYLSESIAE 126

Query: 67  VIFLSNSLTFMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVLVGASAWVDLLGM 126
           VIFLSNSLTFMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVLVGASAWVDLLGM
Sbjct: 127 VIFLSNSLTFMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVLVGASAWVDLLGM 186

Query: 127 VAGHAYYFLEDVYPRMTGRRPLKTPSFIRALFADEAVVVARPVDLRFAAPAVEDIHQD 185
           VAGHAYYFLEDVYPRMTGRRPLKTPSFI+ALFADEAVVVARP DLRFAAPA EDIHQD
Sbjct: 187 VAGHAYYFLEDVYPRMTGRRPLKTPSFIKALFADEAVVVARPADLRFAAPAAEDIHQD 244

[Close]

BLAST of Carg13702 vs. ExPASy TrEMBL
Match: A0A0A0KHD5 (Derlin OS=Cucumis sativus OX=3659 GN=Csa_6G514810 PE=3 SV=1)

HSP 1 Score: 345.1 bits (884), Expect = 1.8e-91
Identity = 174/178 (97.75%), Postives = 175/178 (98.31%), Query Frame = 0


Query: 7   DLDFLFHMFFLARYCKLLEENSFRGRTADFFYMLLFGATVLTAIVLVGGMIPYLSESIAE 66
           DLDFLFHMFFLARYCKLLEENSFRGRTADFFYMLLFGATVLT IVLVGGMIPYLSESIAE
Sbjct: 67  DLDFLFHMFFLARYCKLLEENSFRGRTADFFYMLLFGATVLTGIVLVGGMIPYLSESIAE 126

Query: 67  VIFLSNSLTFMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVLVGASAWVDLLGM 126
           VIFLSNSLTFMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVLVGASAWVDLLGM
Sbjct: 127 VIFLSNSLTFMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVLVGASAWVDLLGM 186

Query: 127 VAGHAYYFLEDVYPRMTGRRPLKTPSFIRALFADEAVVVARPVDLRFAAPAVEDIHQD 185
           VAGHAYYFLEDVYPRMTGRRPLKTPSFI+ALFADEAVVVARP DLRFAAPA EDIHQD
Sbjct: 187 VAGHAYYFLEDVYPRMTGRRPLKTPSFIKALFADEAVVVARPADLRFAAPAAEDIHQD 244

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BLAST of Carg13702 vs. ExPASy TrEMBL
Match: A0A1S3B028 (Derlin OS=Cucumis melo OX=3656 GN=LOC103484602 PE=3 SV=1)

HSP 1 Score: 345.1 bits (884), Expect = 1.8e-91
Identity = 174/178 (97.75%), Postives = 175/178 (98.31%), Query Frame = 0


Query: 7   DLDFLFHMFFLARYCKLLEENSFRGRTADFFYMLLFGATVLTAIVLVGGMIPYLSESIAE 66
           DLDFLFHMFFLARYCKLLEENSFRGRTADFFYMLLFGATVLT IVLVGGMIPYLSESIAE
Sbjct: 67  DLDFLFHMFFLARYCKLLEENSFRGRTADFFYMLLFGATVLTGIVLVGGMIPYLSESIAE 126

Query: 67  VIFLSNSLTFMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVLVGASAWVDLLGM 126
           VIFLSNSLTFMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVLVGASAWVDLLGM
Sbjct: 127 VIFLSNSLTFMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVLVGASAWVDLLGM 186

Query: 127 VAGHAYYFLEDVYPRMTGRRPLKTPSFIRALFADEAVVVARPVDLRFAAPAVEDIHQD 185
           VAGHAYYFLEDVYPRMTGRRPLKTPSFI+ALFADEAVVVARP DLRFAAPA EDIHQD
Sbjct: 187 VAGHAYYFLEDVYPRMTGRRPLKTPSFIKALFADEAVVVARPADLRFAAPAAEDIHQD 244

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BLAST of Carg13702 vs. TAIR 10
Match: AT4G04860.1 (DERLIN-2.2 )

HSP 1 Score: 312.4 bits (799), Expect = 2.4e-85
Identity = 152/178 (85.39%), Postives = 167/178 (93.82%), Query Frame = 0


Query: 7   DLDFLFHMFFLARYCKLLEENSFRGRTADFFYMLLFGATVLTAIVLVGGMIPYLSESIAE 66
           DLDF+FHMFFLARYCKLLEENSFRG+TADF YMLLFGA+VLT IVL+GGMIPYLS S A+
Sbjct: 67  DLDFMFHMFFLARYCKLLEENSFRGKTADFLYMLLFGASVLTGIVLIGGMIPYLSASFAK 126

Query: 67  VIFLSNSLTFMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVLVGASAWVDLLGM 126
           +IFLSNSLTFMMVYVWSKQNP+IHMSFLGLFTFTAAYLPWVLLGFS+LVGASAWVDLLGM
Sbjct: 127 IIFLSNSLTFMMVYVWSKQNPYIHMSFLGLFTFTAAYLPWVLLGFSILVGASAWVDLLGM 186

Query: 127 VAGHAYYFLEDVYPRMTGRRPLKTPSFIRALFADEAVVVARPVDLRFAAPAVEDIHQD 185
           +AGHAYYFL +VYPRMT RRPLKTPSF++ALFADE VVVARP D+RFAA   ++IHQD
Sbjct: 187 IAGHAYYFLAEVYPRMTNRRPLKTPSFLKALFADEPVVVARPEDVRFAAAPFDEIHQD 244

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BLAST of Carg13702 vs. TAIR 10
Match: AT4G21810.1 (DERLIN-2.1 )

HSP 1 Score: 303.9 bits (777), Expect = 8.7e-83
Identity = 149/178 (83.71%), Postives = 163/178 (91.57%), Query Frame = 0


Query: 7   DLDFLFHMFFLARYCKLLEENSFRGRTADFFYMLLFGATVLTAIVLVGGMIPYLSESIAE 66
           DLDFLFHMFFLARYCKLLEENSFRG+TADF YMLLFGATVLT IVL+GGMIPYLS S ++
Sbjct: 67  DLDFLFHMFFLARYCKLLEENSFRGKTADFLYMLLFGATVLTGIVLIGGMIPYLSVSFSK 126

Query: 67  VIFLSNSLTFMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVLVGASAWVDLLGM 126
           +IFLSNSLTFMMVYVWSKQNP+IHMSFLGLFTFTAAYLPWVLLGFS+LVGASAW D LGM
Sbjct: 127 IIFLSNSLTFMMVYVWSKQNPYIHMSFLGLFTFTAAYLPWVLLGFSILVGASAWGDFLGM 186

Query: 127 VAGHAYYFLEDVYPRMTGRRPLKTPSFIRALFADEAVVVARPVDLRFAAPAVEDIHQD 185
           +AGHAYYFL  VYPRMT RRPLKTPSF++ALFADE VV+ARP D+RFA    ++IHQD
Sbjct: 187 IAGHAYYFLAFVYPRMTDRRPLKTPSFLKALFADEPVVIARPEDVRFAHAPFDEIHQD 244

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BLAST of Carg13702 vs. TAIR 10
Match: AT4G29330.1 (DERLIN-1 )

HSP 1 Score: 109.8 bits (273), Expect = 2.4e-24
Identity = 61/152 (40.13%), Postives = 90/152 (59.21%), Query Frame = 0


Query: 8   LDFLFHMFFLARYCKLLEENSFRGRTADFFYMLLFGATVLTAIVLVGGMIPYLSESIAEV 67
           ++F   +  +ARY   LE+  F  RTADF +M++FG+  L    LV  +IP+        
Sbjct: 67  INFGIRLLMIARYGVQLEKGPFERRTADFLWMMIFGSFTL----LVLSVIPFFWTP---- 126

Query: 68  IFLSNSLTFMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVLVGASAWVDLLGMV 127
            FL  SL FM++Y+WS++ P  ++S  GL T  A YLPW +L   V+ G+    DLLG++
Sbjct: 127 -FLGVSLVFMLLYLWSREFPNANISLYGLVTLKAFYLPWAMLALDVIFGSPIMPDLLGII 186

Query: 128 AGHAYYFLEDVYPRMTGRRPLKTPSFIRALFA 160
           AGH YYFL  ++P  TG+  LKTP ++  + A
Sbjct: 187 AGHLYYFLTVLHPLATGKNYLKTPKWVNKIVA 209

The following BLAST results are available for this feature:

BLAST of Carg13702 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7033942.1	2.9e-96	100.00	Derlin-2.2, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6603771.1	6.7e-93	100.00	Derlin-2.2, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022950204.1	6.7e-93	100.00	derlin-2.2 [Cucurbita moschata] >XP_022977725.1 derlin-2.2 [Cucurbita maxima] >X...	[more]
XP_038882799.1	1.3e-91	98.31	derlin-2.2 [Benincasa hispida]	[more]
XP_008439977.1	3.7e-91	97.75	PREDICTED: derlin-2.2 [Cucumis melo] >TYK13054.1 derlin-2.2 [Cucumis melo var. m...	[more]

BLAST of Carg13702 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZS88	3.4e-84	85.39	Derlin-2.2 OS=Arabidopsis thaliana OX=3702 GN=DER2.2 PE=2 SV=1	[more]
Q8VZ96	1.2e-81	83.71	Derlin-2.1 OS=Arabidopsis thaliana OX=3702 GN=DER2.1 PE=2 SV=3	[more]
Q851X7	1.4e-80	85.96	Derlin-2 OS=Oryza sativa subsp. japonica OX=39947 GN=DER2 PE=2 SV=1	[more]
Q4G2J4	3.0e-80	85.38	Derlin-2.1 OS=Zea mays OX=4577 GN=DER2.1 PE=2 SV=2	[more]
Q4G2J3	3.9e-80	85.38	Derlin-2.2 OS=Zea mays OX=4577 GN=DER2.2 PE=2 SV=1	[more]

BLAST of Carg13702 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IN59	3.2e-93	100.00	Derlin OS=Cucurbita maxima OX=3661 GN=LOC111477949 PE=3 SV=1	[more]
A0A6J1GF48	3.2e-93	100.00	Derlin OS=Cucurbita moschata OX=3662 GN=LOC111453368 PE=3 SV=1	[more]
A0A5D3CPU8	1.8e-91	97.75	Derlin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G006560 PE=3 S...	[more]
A0A0A0KHD5	1.8e-91	97.75	Derlin OS=Cucumis sativus OX=3659 GN=Csa_6G514810 PE=3 SV=1	[more]
A0A1S3B028	1.8e-91	97.75	Derlin OS=Cucumis melo OX=3656 GN=LOC103484602 PE=3 SV=1	[more]

BLAST of Carg13702 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G04860.1	2.4e-85	85.39	DERLIN-2.2	[more]
AT4G21810.1	8.7e-83	83.71	DERLIN-2.1	[more]
AT4G29330.1	2.4e-24	40.13	DERLIN-1	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007599	Derlin	PFAM	PF04511	DER1	coord: 8..151 e-value: 1.1E-40 score: 139.6
None	No IPR available	PANTHER	PTHR11009:SF29	DERLIN	coord: 7..181
None	No IPR available	PANTHER	PTHR11009	DER1-LIKE PROTEIN, DERLIN	coord: 7..181
IPR035952	Rhomboid-like superfamily	SUPERFAMILY	144091	Rhomboid-like	coord: 8..141

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg13702-RA	Carg13702-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030968	endoplasmic reticulum unfolded protein response
biological_process	GO:0030433	ubiquitin-dependent ERAD pathway
cellular_component	GO:0000839	Hrd1p ubiquitin ligase ERAD-L complex
cellular_component	GO:0030176	integral component of endoplasmic reticulum membrane
molecular_function	GO:0051787	misfolded protein binding
molecular_function	GO:1990381	ubiquitin-specific protease binding