Carg13701 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg13701
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr03: 5065580 .. 5066566 (-)
RNA-Seq ExpressionCarg13701
SyntenyCarg13701
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CGGGGAAGAGCTGTTTTGTTTTGTTTCGCCGACTTTCTTCTCCAAACTTTTCCTTCCCGATTCTGCGGATCTCTTTCTCTGTGGGATTGTGCGGAGAATCTCTTCGCTCCAAGCTCCGGTTCTTCTTTCAAGCTTGCAAACATTAGCCTCTTCTGCGTCTTCGATCTCCACCGGACGTTTTTCTTTATCGGCGATCATTTTTCTGAGATTCGATGGCTCAAGCTGTGGAAGAATGGTACAAGCAAATGCCTATTATTACGCGCTCCTATCTCACTGCCGCTATCGCTACCACAATCGGCTGTTCCCTTGATGTATGTACCTTCTCTCCCCTTTTTCCATTTCTAGCTGTAGTTTTCTTGTTCTTGAAATCATCTAGGTTTACCTTTTGTTCTTTCTAGGGATCATCTCTTACATTATGGTTTTGAAGCGGAAGGTTTTGAGAATGCCTTCAAAGTTTTCTCTCAGTCTTGATTTTGATTTCTTATGGATTCATTAATGGTTTCTTTTGCCATCCCGCATGGTTACCGATGTCGATTAGTATTGCCTTCGGAGATTTTGATTTTTAGTTTGGTCTTTTGGTTTGCCATGGCGATTCTTGATGATTTTAGTGACCGATGGGGATTGCTGTACAAAATTCTTTAAGTTCTTGTGTCAAAATTTCCTGGTACTTAGTGGTCCAAAACGGAGGCACCCTGTTTTGTTGTTTCAGGATGATTTCTATTGGAATATCATAAACTTTAAACGTGTGGCTCATCCTTATAATCTTATTAGCCTTTGTTCCACATCATTTTGCTTCTTAATTTTGGAGTTTCACAAATGATATATTGTTTTAGCTTATCATTTGGTTTAGTTAATAATCTGTTACGGATTTTATATCCTACAGATTATCTCTCCGCATCATCTTTACTTGAACCCTATCCTGGTGGCCAAGAAGTATCAGTTCTGGCGTCTGATTACCAACTTCCTGTTCTTCCGAAAAATGGGTAA

mRNA sequence

CGGGGAAGAGCTGTTTTGTTTTGTTTCGCCGACTTTCTTCTCCAAACTTTTCCTTCCCGATTCTGCGGATCTCTTTCTCTGTGGGATTGTGCGGAGAATCTCTTCGCTCCAAGCTCCGGTTCTTCTTTCAAGCTTGCAAACATTAGCCTCTTCTGCGTCTTCGATCTCCACCGGACGTTTTTCTTTATCGGCGATCATTTTTCTGAGATTCGATGGCTCAAGCTGTGGAAGAATGGTACAAGCAAATGCCTATTATTACGCGCTCCTATCTCACTGCCGCTATCGCTACCACAATCGGCTGTTCCCTTGATGGATCATCTCTTACATTATGGTTTTGAAGCGGAAGATTATCTCTCCGCATCATCTTTACTTGAACCCTATCCTGGTGGCCAAGAAGTATCAGTTCTGGCGTCTGATTACCAACTTCCTGTTCTTCCGAAAAATGGGTAA

Coding sequence (CDS)

CGGGGAAGAGCTGTTTTGTTTTGTTTCGCCGACTTTCTTCTCCAAACTTTTCCTTCCCGATTCTGCGGATCTCTTTCTCTGTGGGATTGTGCGGAGAATCTCTTCGCTCCAAGCTCCGGTTCTTCTTTCAAGCTTGCAAACATTAGCCTCTTCTGCGTCTTCGATCTCCACCGGACGTTTTTCTTTATCGGCGATCATTTTTCTGAGATTCGATGGCTCAAGCTGTGGAAGAATGGTACAAGCAAATGCCTATTATTACGCGCTCCTATCTCACTGCCGCTATCGCTACCACAATCGGCTGTTCCCTTGATGGATCATCTCTTACATTATGGTTTTGAAGCGGAAGATTATCTCTCCGCATCATCTTTACTTGAACCCTATCCTGGTGGCCAAGAAGTATCAGTTCTGGCGTCTGATTACCAACTTCCTGTTCTTCCGAAAAATGGGTAA

Protein sequence

RGRAVLFCFADFLLQTFPSRFCGSLSLWDCAENLFAPSSGSSFKLANISLFCVFDLHRTFFFIGDHFSEIRWLKLWKNGTSKCLLLRAPISLPLSLPQSAVPLMDHLLHYGFEAEDYLSASSLLEPYPGGQEVSVLASDYQLPVLPKNG
Homology
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BLAST of Carg13701 vs. NCBI nr
Match: KAG7033943.1 (hypothetical protein SDJN02_03669, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 310.1 bits (793), Expect = 1.1e-80
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 0 

Query: 1   RGRAVLFCFADFLLQTFPSRFCGSLSLWDCAENLFAPSSGSSFKLANISLFCVFDLHRTF 60
           RGRAVLFCFADFLLQTFPSRFCGSLSLWDCAENLFAPSSGSSFKLANISLFCVFDLHRTF
Sbjct: 1   RGRAVLFCFADFLLQTFPSRFCGSLSLWDCAENLFAPSSGSSFKLANISLFCVFDLHRTF 60

Query: 61  FFIGDHFSEIRWLKLWKNGTSKCLLLRAPISLPLSLPQSAVPLMDHLLHYGFEAEDYLSA 120
           FFIGDHFSEIRWLKLWKNGTSKCLLLRAPISLPLSLPQSAVPLMDHLLHYGFEAEDYLSA
Sbjct: 61  FFIGDHFSEIRWLKLWKNGTSKCLLLRAPISLPLSLPQSAVPLMDHLLHYGFEAEDYLSA 120

Query: 121 SSLLEPYPGGQEVSVLASDYQLPVLPKNG 150
           SSLLEPYPGGQEVSVLASDYQLPVLPKNG
Sbjct: 121 SSLLEPYPGGQEVSVLASDYQLPVLPKNG 149

The following BLAST results are available for this feature:
BLAST of Carg13701 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7033943.11.1e-80100.00hypothetical protein SDJN02_03669, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg13701 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg13701 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg13701 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg13701-RACarg13701-RAmRNA