Carg13653 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg13653
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	CCT domain-containing protein
Location	Carg_Chr02: 180278 .. 181326 (-)
RNA-Seq Expression	Carg13653
Synteny	Carg13653

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCATTCCCTCATCTCTACTCTGATCATCTTCTTCCTCCCAACACCAACAACACTTTCTCTGATGTCCACACCCTATTAATGCCTGCTGGAGACTATGGAATGTGTAGCATTAGGCCCAATCATCAAGTCGATTTGGCTGCCGGGGGACAACCCTTCATCCCCTCCCCATCCCACGCCCTCTCGCCGCTTCTAACAATGCCATGTCCCGTCTCCGACATGACTGTCCCGTCCTGGCCTGAGTCTAACATGGGATTGTATGGCATTCACAGCTTCATCGGCAGTCAGGCAGCGTTGCCCGGGGCATGCGAATACGGCGATGAGGTCTTCGGGTACGTGCCTGAGTTGAAGCCTGTGTATAGCAGCAGCAAGTATGAAATGGGCGGCGTGGAAGAGAGTAACATTAAGGTGGCAATTCGGTACTCAGAGGAAGAGAGGAAAGAAAGGATTGTGAGATATTTGAAGAAGAGAAACCAGAGGAATTTCAACAAAACCATCAAGGTTCTTACAATTCGTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCAATAAATAAACTAAGTGCCCTCATCATTGATTTTGGTTTGTTGTTTCACAGTATGCATGTCGGAAGACGCTAGCAGACAGGAGAACACGAGTACGAGGAAGATTTGCTCGCAACAACAACGAGCTCTGTCACACTCAGATCCCTCTCCAAACCAACCAATTAAACAAACAAAGAGATCAAACGGTAACAACATTCTATTTTGTTTGTATGTTTTTGTTCATGAAGGCGAGAGCTTTCCATTTTTTGTATGTTTTTGATGATAAAGTGGAGAGCTTTTTGAGATGGGTGGGTCAATTTCCTTACTTTTTTTTTTTTTTTTTTGACAGAAGAAGGAAGAGGAAGAGAGTTGGCTGCAAGAATTGGCAGCAAGTTTAATGTATTTACCTTATGTCACAGATTTCAGTGGCCTTGACGATCATCTGTAATTATTTCACAATTATTACAAAACTATAAAATTTTATTAAAAATCATTTTTTTTTAT

mRNA sequence

ATGGCTTCATTCCCTCATCTCTACTCTGATCATCTTCTTCCTCCCAACACCAACAACACTTTCTCTGATGTCCACACCCTATTAATGCCTGCTGGAGACTATGGAATGTGTAGCATTAGGCCCAATCATCAAGTCGATTTGGCTGCCGGGGGACAACCCTTCATCCCCTCCCCATCCCACGCCCTCTCGCCGCTTCTAACAATGCCATGTCCCGTCTCCGACATGACTGTCCCGTCCTGGCCTGAGTCTAACATGGGATTGTATGGCATTCACAGCTTCATCGGCAGTCAGGCAGCGTTGCCCGGGGCATGCGAATACGGCGATGAGGTCTTCGGGTACGTGCCTGAGTTGAAGCCTGTGTATAGCAGCAGCAAGTATGAAATGGGCGGCGTGGAAGAGAGTAACATTAAGGTGGCAATTCGGTACTCAGAGGAAGAGAGGAAAGAAAGGATTGTGAGATATTTGAAGAAGAGAAACCAGAGGAATTTCAACAAAACCATCAAGTATGCATGTCGGAAGACGCTAGCAGACAGGAGAACACGAGTACGAGGAAGATTTGCTCGCAACAACAACGAGCTCTGTCACACTCAGATCCCTCTCCAAACCAACCAATTAAACAAACAAAGAGATCAAACGAAGAAGGAAGAGGAAGAGAGTTGGCTGCAAGAATTGGCAGCAAGTTTAATGTATTTACCTTATGTCACAGATTTCAGTGGCCTTGACGATCATCTGTAATTATTTCACAATTATTACAAAACTATAAAATTTTATTAAAAATCATTTTTTTTTAT

Coding sequence (CDS)

ATGGCTTCATTCCCTCATCTCTACTCTGATCATCTTCTTCCTCCCAACACCAACAACACTTTCTCTGATGTCCACACCCTATTAATGCCTGCTGGAGACTATGGAATGTGTAGCATTAGGCCCAATCATCAAGTCGATTTGGCTGCCGGGGGACAACCCTTCATCCCCTCCCCATCCCACGCCCTCTCGCCGCTTCTAACAATGCCATGTCCCGTCTCCGACATGACTGTCCCGTCCTGGCCTGAGTCTAACATGGGATTGTATGGCATTCACAGCTTCATCGGCAGTCAGGCAGCGTTGCCCGGGGCATGCGAATACGGCGATGAGGTCTTCGGGTACGTGCCTGAGTTGAAGCCTGTGTATAGCAGCAGCAAGTATGAAATGGGCGGCGTGGAAGAGAGTAACATTAAGGTGGCAATTCGGTACTCAGAGGAAGAGAGGAAAGAAAGGATTGTGAGATATTTGAAGAAGAGAAACCAGAGGAATTTCAACAAAACCATCAAGTATGCATGTCGGAAGACGCTAGCAGACAGGAGAACACGAGTACGAGGAAGATTTGCTCGCAACAACAACGAGCTCTGTCACACTCAGATCCCTCTCCAAACCAACCAATTAAACAAACAAAGAGATCAAACGAAGAAGGAAGAGGAAGAGAGTTGGCTGCAAGAATTGGCAGCAAGTTTAATGTATTTACCTTATGTCACAGATTTCAGTGGCCTTGACGATCATCTGTAA

Protein sequence

MASFPHLYSDHLLPPNTNNTFSDVHTLLMPAGDYGMCSIRPNHQVDLAAGGQPFIPSPSHALSPLLTMPCPVSDMTVPSWPESNMGLYGIHSFIGSQAALPGACEYGDEVFGYVPELKPVYSSSKYEMGGVEESNIKVAIRYSEEERKERIVRYLKKRNQRNFNKTIKYACRKTLADRRTRVRGRFARNNNELCHTQIPLQTNQLNKQRDQTKKEEEESWLQELAASLMYLPYVTDFSGLDDHL

Homology

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BLAST of Carg13653 vs. NCBI nr
Match: KAG7034847.1 (Zinc finger protein CONSTANS-LIKE 3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 497.7 bits (1280), Expect = 5.9e-137
Identity = 244/244 (100.00%), Postives = 244/244 (100.00%), Query Frame = 0


Query: 1   MASFPHLYSDHLLPPNTNNTFSDVHTLLMPAGDYGMCSIRPNHQVDLAAGGQPFIPSPSH 60
           MASFPHLYSDHLLPPNTNNTFSDVHTLLMPAGDYGMCSIRPNHQVDLAAGGQPFIPSPSH
Sbjct: 1   MASFPHLYSDHLLPPNTNNTFSDVHTLLMPAGDYGMCSIRPNHQVDLAAGGQPFIPSPSH 60

Query: 61  ALSPLLTMPCPVSDMTVPSWPESNMGLYGIHSFIGSQAALPGACEYGDEVFGYVPELKPV 120
           ALSPLLTMPCPVSDMTVPSWPESNMGLYGIHSFIGSQAALPGACEYGDEVFGYVPELKPV
Sbjct: 61  ALSPLLTMPCPVSDMTVPSWPESNMGLYGIHSFIGSQAALPGACEYGDEVFGYVPELKPV 120

Query: 121 YSSSKYEMGGVEESNIKVAIRYSEEERKERIVRYLKKRNQRNFNKTIKYACRKTLADRRT 180
           YSSSKYEMGGVEESNIKVAIRYSEEERKERIVRYLKKRNQRNFNKTIKYACRKTLADRRT
Sbjct: 121 YSSSKYEMGGVEESNIKVAIRYSEEERKERIVRYLKKRNQRNFNKTIKYACRKTLADRRT 180

Query: 181 RVRGRFARNNNELCHTQIPLQTNQLNKQRDQTKKEEEESWLQELAASLMYLPYVTDFSGL 240
           RVRGRFARNNNELCHTQIPLQTNQLNKQRDQTKKEEEESWLQELAASLMYLPYVTDFSGL
Sbjct: 181 RVRGRFARNNNELCHTQIPLQTNQLNKQRDQTKKEEEESWLQELAASLMYLPYVTDFSGL 240

Query: 241 DDHL 245
           DDHL
Sbjct: 241 DDHL 244

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BLAST of Carg13653 vs. NCBI nr
Match: XP_022947706.1 (uncharacterized protein LOC111451492 [Cucurbita moschata])

HSP 1 Score: 483.0 bits (1242), Expect = 1.5e-132
Identity = 240/245 (97.96%), Postives = 240/245 (97.96%), Query Frame = 0


Query: 1   MASFPHLYSDHLLPPNTNNTFSDVHTLLMPAGDYGMCSIRPNHQVDLAAGGQPF-IPSPS 60
           MASFPHLYSDHLLPPNTNNTFSDVHTLLMPAGDYGMCSIRPNH VDLAAGGQPF IPSPS
Sbjct: 1   MASFPHLYSDHLLPPNTNNTFSDVHTLLMPAGDYGMCSIRPNHHVDLAAGGQPFIIPSPS 60

Query: 61  HALSPLLTMPCPVSDMTVPSWPESNMGLYGIHSFIGSQAALPGACEYGDEVFGYVPELKP 120
            ALSPLLTMPCPVSDMTVPSWPESNMGLYGIHSFIGSQAALPGACEYGDEVFGYVPELKP
Sbjct: 61  DALSPLLTMPCPVSDMTVPSWPESNMGLYGIHSFIGSQAALPGACEYGDEVFGYVPELKP 120

Query: 121 VYSSSKYEMGGVEESNIKVAIRYSEEERKERIVRYLKKRNQRNFNKTIKYACRKTLADRR 180
           VYSSSKYEMGGVEESNIKVAIRYSEEERKERIVRYLKKRNQRNFNKTIKYACRKTLADRR
Sbjct: 121 VYSSSKYEMGGVEESNIKVAIRYSEEERKERIVRYLKKRNQRNFNKTIKYACRKTLADRR 180

Query: 181 TRVRGRFARNNNELCHTQIPLQTNQLNKQRDQTKKEEEESWLQELAASLMYLPYVTDFSG 240
           TRVRGRFARNNNELCHTQIPLQTNQLNKQRDQT KEEEESWLQELAASLMYLPYVTDFSG
Sbjct: 181 TRVRGRFARNNNELCHTQIPLQTNQLNKQRDQTNKEEEESWLQELAASLMYLPYVTDFSG 240

Query: 241 LDDHL 245
           LD HL
Sbjct: 241 LDHHL 245

[Close]

BLAST of Carg13653 vs. NCBI nr
Match: XP_022970832.1 (uncharacterized protein LOC111469690 [Cucurbita maxima])

HSP 1 Score: 478.0 bits (1229), Expect = 4.8e-131
Identity = 235/244 (96.31%), Postives = 238/244 (97.54%), Query Frame = 0


Query: 1   MASFPHLYSDHLLPPNTNNTFSDVHTLLMPAGDYGMCSIRPNHQVDLAAGGQPFIPSPSH 60
           MASFPHLYSDHLLPPNTNNTFSDV TLLMPAGD GMCSIRPNH VDLAAGGQPFIPSPS 
Sbjct: 1   MASFPHLYSDHLLPPNTNNTFSDVRTLLMPAGDSGMCSIRPNHHVDLAAGGQPFIPSPSD 60

Query: 61  ALSPLLTMPCPVSDMTVPSWPESNMGLYGIHSFIGSQAALPGACEYGDEVFGYVPELKPV 120
           AL PLLTMPCPVSDMTVPSWPESNMGLYGIHSFIGSQAALPGACEYGD++FGYVPELKPV
Sbjct: 61  ALLPLLTMPCPVSDMTVPSWPESNMGLYGIHSFIGSQAALPGACEYGDDLFGYVPELKPV 120

Query: 121 YSSSKYEMGGVEESNIKVAIRYSEEERKERIVRYLKKRNQRNFNKTIKYACRKTLADRRT 180
           YSSS YEMGGVEESNIKVAIRYSEEERKERIVRYLKKRNQRNFNKTIKYACRKTLADRRT
Sbjct: 121 YSSSSYEMGGVEESNIKVAIRYSEEERKERIVRYLKKRNQRNFNKTIKYACRKTLADRRT 180

Query: 181 RVRGRFARNNNELCHTQIPLQTNQLNKQRDQTKKEEEESWLQELAASLMYLPYVTDFSGL 240
           RVRGRFARNNNELCHTQIPLQTNQLNKQRDQTKKEEEE+WLQELAASLMYLPYVTDFSGL
Sbjct: 181 RVRGRFARNNNELCHTQIPLQTNQLNKQRDQTKKEEEENWLQELAASLMYLPYVTDFSGL 240

Query: 241 DDHL 245
           DDHL
Sbjct: 241 DDHL 244

[Close]

BLAST of Carg13653 vs. NCBI nr
Match: XP_023533070.1 (uncharacterized protein LOC111795062 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 474.2 bits (1219), Expect = 6.9e-130
Identity = 234/245 (95.51%), Postives = 237/245 (96.73%), Query Frame = 0


Query: 1   MASFPHLYSDHLLPPNTNNTFSDVHTLLMPAGDYGMCSIRPNHQVDLAAGGQPFIPSPSH 60
           MASFPHLYSDHLLPPNTNNTFSDVHTLLMPAGD GMC+I PNH + LAA GQPFIPSPSH
Sbjct: 1   MASFPHLYSDHLLPPNTNNTFSDVHTLLMPAGDSGMCTITPNHHLHLAAAGQPFIPSPSH 60

Query: 61  ALSPLLTMPCPVSDMTVPSWPESNMGLYGIHSFIGSQAALPGACEYGDEVFGYVPELKPV 120
           ALSPLLTMPCPVSDMTVPSWPESNMGLYGIHSF+GSQAALPGACEYGDEVFGYVPELKP 
Sbjct: 61  ALSPLLTMPCPVSDMTVPSWPESNMGLYGIHSFVGSQAALPGACEYGDEVFGYVPELKPA 120

Query: 121 Y-SSSKYEMGGVEESNIKVAIRYSEEERKERIVRYLKKRNQRNFNKTIKYACRKTLADRR 180
           Y SSS YEMGGVEESNIKVAIRYSEEERKERIVRYLKKRNQRNFNKTIKYACRKTLADRR
Sbjct: 121 YSSSSNYEMGGVEESNIKVAIRYSEEERKERIVRYLKKRNQRNFNKTIKYACRKTLADRR 180

Query: 181 TRVRGRFARNNNELCHTQIPLQTNQLNKQRDQTKKEEEESWLQELAASLMYLPYVTDFSG 240
           TRVRGRFARNNNELCHTQIPLQTNQLNKQRDQTKKEEEESWLQELAASLMYLPYVTDFSG
Sbjct: 181 TRVRGRFARNNNELCHTQIPLQTNQLNKQRDQTKKEEEESWLQELAASLMYLPYVTDFSG 240

Query: 241 LDDHL 245
           LDDHL
Sbjct: 241 LDDHL 245

[Close]

BLAST of Carg13653 vs. NCBI nr
Match: XP_023533071.1 (uncharacterized protein LOC111795062 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 467.6 bits (1202), Expect = 6.5e-128
Identity = 233/245 (95.10%), Postives = 236/245 (96.33%), Query Frame = 0


Query: 1   MASFPHLYSDHLLPPNTNNTFSDVHTLLMPAGDYGMCSIRPNHQVDLAAGGQPFIPSPSH 60
           MASFPHLYSDHLLPPNTNNTFSDVHTLLMPAGD GMC+I PNH + LAA GQPFIPSPSH
Sbjct: 1   MASFPHLYSDHLLPPNTNNTFSDVHTLLMPAGDSGMCTITPNHHLHLAAAGQPFIPSPSH 60

Query: 61  ALSPLLTMPCPVSDMTVPSWPESNMGLYGIHSFIGSQAALPGACEYGDEVFGYVPELKPV 120
           ALSPLLTMPCPVSDMTVPSWPESNMGLYGIHSF+GSQAALPGACEYGDEVFGYVPELKP 
Sbjct: 61  ALSPLLTMPCPVSDMTVPSWPESNMGLYGIHSFVGSQAALPGACEYGDEVFGYVPELKPA 120

Query: 121 Y-SSSKYEMGGVEESNIKVAIRYSEEERKERIVRYLKKRNQRNFNKTIKYACRKTLADRR 180
           Y SSS YEMGGVEESNIKVAIRYSEEERKERIVRYLKKRNQRNFNKTIKYACRKTLADRR
Sbjct: 121 YSSSSNYEMGGVEESNIKVAIRYSEEERKERIVRYLKKRNQRNFNKTIKYACRKTLADRR 180

Query: 181 TRVRGRFARNNNELCHTQIPLQTNQLNKQRDQTKKEEEESWLQELAASLMYLPYVTDFSG 240
           TRVRGRFARNNNELCHTQIPLQTNQLNKQRDQT KEEEESWLQELAASLMYLPYVTDFSG
Sbjct: 181 TRVRGRFARNNNELCHTQIPLQTNQLNKQRDQT-KEEEESWLQELAASLMYLPYVTDFSG 240

Query: 241 LDDHL 245
           LDDHL
Sbjct: 241 LDDHL 244

[Close]

BLAST of Carg13653 vs. ExPASy Swiss-Prot
Match: Q9SK53 (Zinc finger protein CONSTANS-LIKE 3 OS=Arabidopsis thaliana OX=3702 GN=COL3 PE=1 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 1.1e-05
Identity = 31/68 (45.59%), Postives = 45/68 (66.18%), Query Frame = 0


Query: 127 EMGGV--EESNIKV-AIRYSEEERKERIVRYLKKRNQRNFNKTIKYACRKTLADRRTRVR 186
           E GGV  E +N +  A++ S  ER+ R++RY +KR  R F KTI+YA RK  A+ R R++
Sbjct: 206 ESGGVTAEMTNTETPAVQLSPAEREARVLRYREKRKNRKFEKTIRYASRKAYAEMRPRIK 265

Query: 187 GRFARNNN 192
           GRFA+  +
Sbjct: 266 GRFAKRTD 273

[Close]

BLAST of Carg13653 vs. ExPASy Swiss-Prot
Match: Q940T9 (Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis thaliana OX=3702 GN=COL4 PE=2 SV=2)

HSP 1 Score: 48.9 bits (115), Expect = 9.4e-05
Identity = 33/84 (39.29%), Postives = 47/84 (55.95%), Query Frame = 0


Query: 112 GYVPELKPVYSSSKYEMGGVEES----NIKVAIRYSEEERKERIVRYLKKRNQRNFNKTI 171
           G VP+   V   S Y  GG   S      + A+  +  ER+ R++RY +KR  R F KTI
Sbjct: 257 GVVPDGGSVADVS-YPYGGPATSGADPGTQRAVPLTSAEREARVMRYREKRKNRKFEKTI 316

Query: 172 KYACRKTLADRRTRVRGRFARNNN 192
           +YA RK  A+ R R++GRFA+  +
Sbjct: 317 RYASRKAYAEMRPRIKGRFAKRTD 339

[Close]

BLAST of Carg13653 vs. ExPASy Swiss-Prot
Match: Q9FDX8 (Zinc finger protein HD1 OS=Oryza sativa subsp. japonica OX=39947 GN=HD1 PE=1 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 2.1e-04
Identity = 21/57 (36.84%), Postives = 41/57 (71.93%), Query Frame = 0


Query: 135 NIKVAIRYSEEERKERIVRYLKKRNQRNFNKTIKYACRKTLADRRTRVRGRFARNNN 192
           ++++++ +S  +R+ R++RY +K+  R F KTI+Y  RK  A+ R R++GRFA+ ++
Sbjct: 314 SLQMSLHFSSMDREARVLRYREKKKARKFEKTIRYETRKAYAEARPRIKGRFAKRSD 370

[Close]

BLAST of Carg13653 vs. ExPASy Swiss-Prot
Match: O50055 (Zinc finger protein CONSTANS-LIKE 1 OS=Arabidopsis thaliana OX=3702 GN=COL1 PE=1 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 3.6e-04
Identity = 22/49 (44.90%), Postives = 35/49 (71.43%), Query Frame = 0


Query: 143 SEEERKERIVRYLKKRNQRNFNKTIKYACRKTLADRRTRVRGRFARNNN 192
           S  +R+ R++RY +K+  R F KTI+YA RK  A++R R++GRFA+  +
Sbjct: 282 SPRDREARVLRYREKKKMRKFEKTIRYASRKAYAEKRPRIKGRFAKKKD 330

[Close]

BLAST of Carg13653 vs. ExPASy Swiss-Prot
Match: Q9FHH8 (Zinc finger protein CONSTANS-LIKE 5 OS=Arabidopsis thaliana OX=3702 GN=COL5 PE=2 SV=2)

HSP 1 Score: 47.0 bits (110), Expect = 3.6e-04
Identity = 23/46 (50.00%), Postives = 33/46 (71.74%), Query Frame = 0


Query: 143 SEEERKERIVRYLKKRNQRNFNKTIKYACRKTLADRRTRVRGRFAR 189
           S  +R+ R++RY +KR  R F KTI+YA RK  A+ R R++GRFA+
Sbjct: 281 SSMDREARVLRYREKRKNRKFEKTIRYASRKAYAESRPRIKGRFAK 326

[Close]

BLAST of Carg13653 vs. ExPASy TrEMBL
Match: A0A6J1G770 (uncharacterized protein LOC111451492 OS=Cucurbita moschata OX=3662 GN=LOC111451492 PE=4 SV=1)

HSP 1 Score: 483.0 bits (1242), Expect = 7.2e-133
Identity = 240/245 (97.96%), Postives = 240/245 (97.96%), Query Frame = 0


Query: 1   MASFPHLYSDHLLPPNTNNTFSDVHTLLMPAGDYGMCSIRPNHQVDLAAGGQPF-IPSPS 60
           MASFPHLYSDHLLPPNTNNTFSDVHTLLMPAGDYGMCSIRPNH VDLAAGGQPF IPSPS
Sbjct: 1   MASFPHLYSDHLLPPNTNNTFSDVHTLLMPAGDYGMCSIRPNHHVDLAAGGQPFIIPSPS 60

Query: 61  HALSPLLTMPCPVSDMTVPSWPESNMGLYGIHSFIGSQAALPGACEYGDEVFGYVPELKP 120
            ALSPLLTMPCPVSDMTVPSWPESNMGLYGIHSFIGSQAALPGACEYGDEVFGYVPELKP
Sbjct: 61  DALSPLLTMPCPVSDMTVPSWPESNMGLYGIHSFIGSQAALPGACEYGDEVFGYVPELKP 120

Query: 121 VYSSSKYEMGGVEESNIKVAIRYSEEERKERIVRYLKKRNQRNFNKTIKYACRKTLADRR 180
           VYSSSKYEMGGVEESNIKVAIRYSEEERKERIVRYLKKRNQRNFNKTIKYACRKTLADRR
Sbjct: 121 VYSSSKYEMGGVEESNIKVAIRYSEEERKERIVRYLKKRNQRNFNKTIKYACRKTLADRR 180

Query: 181 TRVRGRFARNNNELCHTQIPLQTNQLNKQRDQTKKEEEESWLQELAASLMYLPYVTDFSG 240
           TRVRGRFARNNNELCHTQIPLQTNQLNKQRDQT KEEEESWLQELAASLMYLPYVTDFSG
Sbjct: 181 TRVRGRFARNNNELCHTQIPLQTNQLNKQRDQTNKEEEESWLQELAASLMYLPYVTDFSG 240

Query: 241 LDDHL 245
           LD HL
Sbjct: 241 LDHHL 245

[Close]

BLAST of Carg13653 vs. ExPASy TrEMBL
Match: A0A6J1I095 (uncharacterized protein LOC111469690 OS=Cucurbita maxima OX=3661 GN=LOC111469690 PE=4 SV=1)

HSP 1 Score: 478.0 bits (1229), Expect = 2.3e-131
Identity = 235/244 (96.31%), Postives = 238/244 (97.54%), Query Frame = 0


Query: 1   MASFPHLYSDHLLPPNTNNTFSDVHTLLMPAGDYGMCSIRPNHQVDLAAGGQPFIPSPSH 60
           MASFPHLYSDHLLPPNTNNTFSDV TLLMPAGD GMCSIRPNH VDLAAGGQPFIPSPS 
Sbjct: 1   MASFPHLYSDHLLPPNTNNTFSDVRTLLMPAGDSGMCSIRPNHHVDLAAGGQPFIPSPSD 60

Query: 61  ALSPLLTMPCPVSDMTVPSWPESNMGLYGIHSFIGSQAALPGACEYGDEVFGYVPELKPV 120
           AL PLLTMPCPVSDMTVPSWPESNMGLYGIHSFIGSQAALPGACEYGD++FGYVPELKPV
Sbjct: 61  ALLPLLTMPCPVSDMTVPSWPESNMGLYGIHSFIGSQAALPGACEYGDDLFGYVPELKPV 120

Query: 121 YSSSKYEMGGVEESNIKVAIRYSEEERKERIVRYLKKRNQRNFNKTIKYACRKTLADRRT 180
           YSSS YEMGGVEESNIKVAIRYSEEERKERIVRYLKKRNQRNFNKTIKYACRKTLADRRT
Sbjct: 121 YSSSSYEMGGVEESNIKVAIRYSEEERKERIVRYLKKRNQRNFNKTIKYACRKTLADRRT 180

Query: 181 RVRGRFARNNNELCHTQIPLQTNQLNKQRDQTKKEEEESWLQELAASLMYLPYVTDFSGL 240
           RVRGRFARNNNELCHTQIPLQTNQLNKQRDQTKKEEEE+WLQELAASLMYLPYVTDFSGL
Sbjct: 181 RVRGRFARNNNELCHTQIPLQTNQLNKQRDQTKKEEEENWLQELAASLMYLPYVTDFSGL 240

Query: 241 DDHL 245
           DDHL
Sbjct: 241 DDHL 244

[Close]

BLAST of Carg13653 vs. ExPASy TrEMBL
Match: A0A6J1FX75 (zinc finger protein CONSTANS-LIKE 1-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111448335 PE=4 SV=1)

HSP 1 Score: 290.8 bits (743), Expect = 5.3e-75
Identity = 162/255 (63.53%), Postives = 187/255 (73.33%), Query Frame = 0


Query: 1   MASFPHLYSDHLLPPNTNNTFSDVHTLLMPAGDYGMCSIR----PNHQVDLAAGGQPFIP 60
           MASFPH YSDHL P    N FSD+ +LLM AGD G+  IR     N+ ++L  G + F+ 
Sbjct: 1   MASFPHFYSDHLYP----NNFSDLQSLLMAAGDPGIGGIRNDDDNNNNINLPHGEETFVS 60

Query: 61  S-------PSHALSPLLTMPCPVSDMTVPSWPESNMGLYGIHSFIGSQAALPGACEYGDE 120
           +        S   SPLLTMP P  D+TVPS PE N G+YGIHS IG+Q  +PG+C Y DE
Sbjct: 61  TLDQMASFESDTQSPLLTMPYP--DLTVPSSPEFNKGMYGIHSVIGNQPRVPGSCNYDDE 120

Query: 121 VFGYVPELKPVY-----SSSKYEMGGVEESNIKVAIRYSEEERKERIVRYLKKRNQRNFN 180
           + G+VP+LKP Y     + S YE+ GVEE+NIKVA RYSEEERKERIVRYLKKRNQRNFN
Sbjct: 121 LLGFVPDLKPFYRNIWGTQSSYELHGVEETNIKVASRYSEEERKERIVRYLKKRNQRNFN 180

Query: 181 KTIKYACRKTLADRRTRVRGRFARNNNELCHTQIPLQTNQLN--KQRDQTKKEEEESWLQ 238
           KTIKYACRKTLADRRTRVRGRFARNNNELC T+I L+TN L         K+EEEESWLQ
Sbjct: 181 KTIKYACRKTLADRRTRVRGRFARNNNELCDTEIHLKTNHLTAPSHNQTNKEEEEESWLQ 240

[Close]

BLAST of Carg13653 vs. ExPASy TrEMBL
Match: A0A0A0KGC0 (CCT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G138620 PE=4 SV=1)

HSP 1 Score: 280.4 bits (716), Expect = 7.1e-72
Identity = 166/271 (61.25%), Postives = 184/271 (67.90%), Query Frame = 0


Query: 1   MASFPHLYSDHLLPPNTNNTFSDVHTLLMPAGDYGMCSIRPNH---QVDLAAGGQ----- 60
           MASFPH +   L  P   N FSD+ TLLM AGD GMC IR NH    +DL    +     
Sbjct: 1   MASFPHNFYPDLPYP---NNFSDLQTLLMAAGDTGMCGIRNNHNNDNIDLFVSREETFVS 60

Query: 61  -------PFIPSPSHALSPLLTMP-----CPVSDMTVPSWPESNMGLYGIHSFIGSQAAL 120
                  P   S   +LSP LTM       PVSDMTVPS PE NM  Y IHS I  Q  +
Sbjct: 61  SFDQTVSPDQSSSDTSLSPFLTMQHPDLYGPVSDMTVPSLPEFNMSTYDIHSLINCQPQV 120

Query: 121 PGACEYGDEVFGYVPELKPVY-----SSSKYEMGGVEESNIKVAIRYSEEERKERIVRYL 180
           PG C YGD++ G+VPELKP+Y     + S+YE+  VEE+NIKVA RYSEEERKERIVRYL
Sbjct: 121 PGTCNYGDQLIGFVPELKPLYRDTWGNQSRYEIHAVEETNIKVASRYSEEERKERIVRYL 180

Query: 181 KKRNQRNFNKTIKYACRKTLADRRTRVRGRFARNNNELCHT--QIPLQTNQ-------LN 238
           KKRNQRNFNKTIKYACRKTLADRRTRVRGRFARNNNELC    +IPL+TNQ       L 
Sbjct: 181 KKRNQRNFNKTIKYACRKTLADRRTRVRGRFARNNNELCDNDHEIPLKTNQFSTPNHNLI 240

[Close]

BLAST of Carg13653 vs. ExPASy TrEMBL
Match: A0A6J1JCW3 (uncharacterized protein LOC111483882 OS=Cucurbita maxima OX=3661 GN=LOC111483882 PE=4 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 9.3e-72
Identity = 162/254 (63.78%), Postives = 181/254 (71.26%), Query Frame = 0


Query: 1   MASFPHLYSDHLLPPNTNNTFSDVHTLLMPAGDYGMCSIR---PNHQVDLAAGGQPFIPS 60
           MASFPH YSD L P    N FSD+ +LLM AGD  +  IR    N+ +DL  G + F+PS
Sbjct: 1   MASFPHFYSDLLYP----NNFSDLQSLLMAAGDPRVGGIRNDNNNNNIDLPRGEETFVPS 60

Query: 61  -------PSHALSPLLTMPCPVSDMTVPSWPESNMGLYGIHSFIGSQAALPGACEYGDEV 120
                   S   SPLLTMP P  D+TVPS PE N G+YGIHS   SQ   P +C Y DE+
Sbjct: 61  FDQMASFESDTQSPLLTMPYP--DLTVPSSPEFNKGMYGIHSVSDSQP--PASCNYDDEL 120

Query: 121 FGYVPELKPVY-----SSSKYEMGGVEESNIKVAIRYSEEERKERIVRYLKKRNQRNFNK 180
             +VP LKP Y     + S YEM GVEE+NIKVA RYSEEERKERIVRYLKKRNQRNFNK
Sbjct: 121 LHFVPNLKPFYRNIWGTQSSYEMHGVEETNIKVASRYSEEERKERIVRYLKKRNQRNFNK 180

Query: 181 TIKYACRKTLADRRTRVRGRFARNNNELCHTQIPLQTNQLN--KQRDQTKKEEEESWLQE 238
           TIKYACRKTLADRRTRVRGRFARNNNELC T+IPL+TN L         K+EEEESWLQE
Sbjct: 181 TIKYACRKTLADRRTRVRGRFARNNNELCDTEIPLKTNHLTAPSHNQTNKEEEEESWLQE 240

[Close]

BLAST of Carg13653 vs. TAIR 10
Match: AT3G12890.1 (activator of spomin::LUC2 )

HSP 1 Score: 110.5 bits (275), Expect = 1.9e-24
Identity = 72/153 (47.06%), Postives = 92/153 (60.13%), Query Frame = 0


Query: 109 EVFGYVPELKPVYSSSKYEM------GGVE-ESNIKVAIRYSEEERKERIVRYLKKRNQR 168
           E +G+ PE+KP++  +  E       GG++ E N KV  RYS EERK+RI+RYLKK+NQR
Sbjct: 95  EYYGFSPEIKPLFRPATGEQSWGNSEGGIQAEPNTKVG-RYSVEERKDRIMRYLKKKNQR 154

Query: 169 NFNKTIKYACRKTLADRRTRVRGRFARNNNELCHTQIPLQTNQLN---KQRDQ------- 228
           NFNKTIKY CRKTLADRR RVRGRFAR NN+ C  Q  +  N  N   K+ D        
Sbjct: 155 NFNKTIKYVCRKTLADRRVRVRGRFAR-NNDTCEEQPHMSKNHNNHSEKEEDMFSGSDDY 214

Query: 229 -TKKEEEESWLQELAASLMYLPYVTDFSGLDDH 244
             + E ++ WL E  ++L+  P   D  G   H
Sbjct: 215 LIQMEHDDGWLHEAMSNLIPFPCEFDAPGDAHH 245

[Close]

BLAST of Carg13653 vs. TAIR 10
Match: AT2G33350.1 (CCT motif family protein )

HSP 1 Score: 81.3 bits (199), Expect = 1.2e-15
Identity = 47/94 (50.00%), Postives = 62/94 (65.96%), Query Frame = 0


Query: 97  QAALPGACEYGDEVFGYVPELKPVYSSSKYEMGGVEESNIKVAIRYSEEERKERIVRYLK 156
           Q AL G  E    +    P+  P  +    ++ G+E+S +    + S E+RKE+I RY+K
Sbjct: 265 QKALGGGAENQSHL--VTPQAHP--ALGPVDINGLEDSTLNKVGKLSPEQRKEKIRRYMK 324

Query: 157 KRNQRNFNKTIKYACRKTLADRRTRVRGRFARNN 191
           KRN+RNFNK IKYACRKTLAD R RVRGRFA+N+
Sbjct: 325 KRNERNFNKKIKYACRKTLADSRPRVRGRFAKND 354

[Close]

BLAST of Carg13653 vs. TAIR 10
Match: AT2G33350.2 (CCT motif family protein )

HSP 1 Score: 80.9 bits (198), Expect = 1.6e-15
Identity = 44/76 (57.89%), Postives = 56/76 (73.68%), Query Frame = 0


Query: 115 PELKPVYSSSKYEMGGVEESNIKVAIRYSEEERKERIVRYLKKRNQRNFNKTIKYACRKT 174
           P L PV      ++ G+E+S +    + S E+RKE+I RY+KKRN+RNFNK IKYACRKT
Sbjct: 284 PALGPV------DINGLEDSTLNKVGKLSPEQRKEKIRRYMKKRNERNFNKKIKYACRKT 343

Query: 175 LADRRTRVRGRFARNN 191
           LAD R RVRGRFA+N+
Sbjct: 344 LADSRPRVRGRFAKND 353

[Close]

BLAST of Carg13653 vs. TAIR 10
Match: AT5G41380.1 (CCT motif family protein )

HSP 1 Score: 80.9 bits (198), Expect = 1.6e-15
Identity = 53/95 (55.79%), Postives = 61/95 (64.21%), Query Frame = 0


Query: 122 SSSKYEMGGVEESNIKVAIRYSEEERKERIVRYLKKRNQRNFNKTIKYACRKTLADRRTR 181
           SS    M   EE N KV  RYS EERKE+I +Y  KRNQRNF KTIKYACRKTLAD R R
Sbjct: 191 SSENSTMPFSEEQNFKVG-RYSAEERKEKISKYRAKRNQRNFTKTIKYACRKTLADSRPR 250

Query: 182 VRGRFARNNNELCHTQIPLQTNQLNKQRDQTKKEE 217
           +RGRFARN+  +    I    ++L K     +KEE
Sbjct: 251 IRGRFARNDEVVEIPNIEDDDSELWKLDGLHEKEE 284

[Close]

BLAST of Carg13653 vs. TAIR 10
Match: AT1G63820.1 (CCT motif family protein )

HSP 1 Score: 76.3 bits (186), Expect = 3.9e-14
Identity = 41/59 (69.49%), Postives = 48/59 (81.36%), Query Frame = 0


Query: 132 EESNIKVAIRYSEEERKERIVRYLKKRNQRNFNKTIKYACRKTLADRRTRVRGRFARNN 191
           +E +++V  RYS EERKE+I +Y  KR QRNF KTIKYACRKTLAD R RVRGRFARN+
Sbjct: 178 DEQSLRVG-RYSSEERKEKISKYRAKRTQRNFTKTIKYACRKTLADNRPRVRGRFARND 235

The following BLAST results are available for this feature:

BLAST of Carg13653 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7034847.1	5.9e-137	100.00	Zinc finger protein CONSTANS-LIKE 3, partial [Cucurbita argyrosperma subsp. argy...	[more]
XP_022947706.1	1.5e-132	97.96	uncharacterized protein LOC111451492 [Cucurbita moschata]	[more]
XP_022970832.1	4.8e-131	96.31	uncharacterized protein LOC111469690 [Cucurbita maxima]	[more]
XP_023533070.1	6.9e-130	95.51	uncharacterized protein LOC111795062 isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_023533071.1	6.5e-128	95.10	uncharacterized protein LOC111795062 isoform X2 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg13653 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SK53	1.1e-05	45.59	Zinc finger protein CONSTANS-LIKE 3 OS=Arabidopsis thaliana OX=3702 GN=COL3 PE=1...	[more]
Q940T9	9.4e-05	39.29	Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis thaliana OX=3702 GN=COL4 PE=2...	[more]
Q9FDX8	2.1e-04	36.84	Zinc finger protein HD1 OS=Oryza sativa subsp. japonica OX=39947 GN=HD1 PE=1 SV=...	[more]
O50055	3.6e-04	44.90	Zinc finger protein CONSTANS-LIKE 1 OS=Arabidopsis thaliana OX=3702 GN=COL1 PE=1...	[more]
Q9FHH8	3.6e-04	50.00	Zinc finger protein CONSTANS-LIKE 5 OS=Arabidopsis thaliana OX=3702 GN=COL5 PE=2...	[more]

BLAST of Carg13653 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G770	7.2e-133	97.96	uncharacterized protein LOC111451492 OS=Cucurbita moschata OX=3662 GN=LOC1114514...	[more]
A0A6J1I095	2.3e-131	96.31	uncharacterized protein LOC111469690 OS=Cucurbita maxima OX=3661 GN=LOC111469690...	[more]
A0A6J1FX75	5.3e-75	63.53	zinc finger protein CONSTANS-LIKE 1-like isoform X1 OS=Cucurbita moschata OX=366...	[more]
A0A0A0KGC0	7.1e-72	61.25	CCT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G138620 PE=4 SV...	[more]
A0A6J1JCW3	9.3e-72	63.78	uncharacterized protein LOC111483882 OS=Cucurbita maxima OX=3661 GN=LOC111483882...	[more]

BLAST of Carg13653 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G12890.1	1.9e-24	47.06	activator of spomin::LUC2	[more]
AT2G33350.1	1.2e-15	50.00	CCT motif family protein	[more]
AT2G33350.2	1.6e-15	57.89	CCT motif family protein	[more]
AT5G41380.1	1.6e-15	55.79	CCT motif family protein	[more]
AT1G63820.1	3.9e-14	69.49	CCT motif family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010402	CCT domain	PFAM	PF06203	CCT	coord: 147..189 e-value: 1.6E-16 score: 60.1
IPR010402	CCT domain	PROSITE	PS51017	CCT	coord: 147..189 score: 14.882043
None	No IPR available	PANTHER	PTHR31717	ZINC FINGER PROTEIN CONSTANS-LIKE 10	coord: 1..235
None	No IPR available	PANTHER	PTHR31717:SF56	ACTIVATOR OF SPOMIN::LUC2	coord: 1..235

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg13653-RA	Carg13653-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005515	protein binding