Carg13635 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TTAGGCTTCACTCCATCGCCCTTGTACGTTTTAGAGAAACTGAACGCCCCCTCGGGATCGATTTGCCGATCAAAACTAATATCGCCGCCGCTCGTCATCCCACCTCTCCCCGCATCGTCTTCTCTCCGTCGCCTCTCGGGTTGGTTGTCTCTAGATTGCTTAAACCCTAGCTCTTTAGGGCGCTTCTCCATCGCTTTTGCGTTGCCACTGTTTCTGCAATTATCGTCTCTAAAATCTTGTAGTTCTGATATTTGATTTGAAGTCGCAGACTTTCAGGTATTTTTCCTGATTTCCTATGAAATTGCTTGAAGATCGATTCTTATATTATTTTATTTACTCTTCATTATGAATATATAAATGATTTACGCGCATATATATCATCTTGTTTTTGGTTTTTCTGATAGTTCCTAGCAACCATTTTCTTAACGTCTCTGCGAGTGGCTTGTTCTGCTAAGTTTACATATGATCGCTTCTCAATTTCTCACTTTTAGGTGCACGCGAAAGAAGAAAAATTGTGATTCTTCATTACCTATACTGCAGACCAAACTCAACGTGGTTTTTTCATGAATTTTTTTGGGATAATTGTTCATGGTGACACATATCATCCAGAACTCACAACAAAAATCTTTATGGATTTGAAATTGTTTTCCTCAAATTCTATAGTCTTTGAAACAGCATGATTATTTATTTATTTTTATTTTTTTTGTGCCTATGAATTGTTGAATATAGTGCTTCTTTGTTATTTGTTCAGTCATCCCATTTCCAAGGCACAGTTGTTCTCTCAGCTCAGCTCAGCTCAGCATCATTTTCAATTTCCTTAATCACATCTCTTACAAATCTTCACGTTTCCACATCATTTTGTTTTTATCAATCTCATTATGCACATATCATTTAATGTTAATAGGAATGAGCAGATCACAAGGGCCTTCATCACTCAAAAGAAAAAGGCCAGAACCAGCTCATGGCCATGGAGGAGCTCTCATTGAGCATGAAAAAGTGCTGTATGACCTGATTTGCAGCAAGCAAAGCATGGGGATTTGGATTGGGGACATGAAAAGAGAAACAAAGTATCCTGACAATGTGGTAACTAAATCACTCAAGGCCCTTCAAGGCAGAGGCCTGATTAAACTAGTTGAACACTATCAAAACAAAGGGAAGAAATTCTACCTGTCAAAAGATTTCGAACCATCGAAAGAACTGACCGGCGGTAATTGGTACAGCGATGGAAAGCTCGACAGAGAATACATCAGTACTCTTAAAGGGTTCTGTGCTAGAATGATACAGAAGATGAAGGTGGCTACAATTGAAGGGATCGTGGACTCATTCAAGAAGAGCGGAGCGTCCAAAGTGGACTTGTCTAGGGAGCAAATTGAAGAGATTGTAAATGCTTTGGTGTTGGACAATGAAGTGATGGAGGTGAAGAGCACTGGCGCAGGGGAGTTTGATTTTATTCCTGTTGGGAAGATTTGTTATAAGAGCTATGCTAAAGGAGTTAAAGGGGAGCCCAAAACAGGGGCTATGGCTTCTACTCCTTGTGGAGTCTGTCCAAGGATTAATCATTGCACCCCAAATGGCATCATTTCGCCTAGGACTTGTGTGTATTACACCAAGTGGTTAGAATTTTAGGTTTGAAGCTTTCTGAGGTTGGTTTTAAGAGAACGAGTGGCCGCGAATTTCCCCTCTAACCATACGAACTATGCTCGACTTGGCAATTCTAGAAAAGTTTTAGCTGTCTATTCTTTATTGTGTTCATAATCT TTAGGCTTCACTCCATCGCCCTTGTACGTTTTAGAGAAACTGAACGCCCCCTCGGGATCGATTTGCCGATCAAAACTAATATCGCCGCCGCTCGTCATCCCACCTCTCCCCGCATCGTCTTCTCTCCGTCGCCTCTCGGGTTGGTTGTCTCTAGATTGCTTAAACCCTAGCTCTTTAGGGCGCTTCTCCATCGCTTTTGCGTTGCCACTGTTTCTGCAATTATCGTCTCTAAAATCTTGTAGTTCTGATATTTGATTTGAAGTCGCAGACTTTCAGATGAGCAGATCACAAGGGCCTTCATCACTCAAAAGAAAAAGGCCAGAACCAGCTCATGGCCATGGAGGAGCTCTCATTGAGCATGAAAAAGTGCTGTATGACCTGATTTGCAGCAAGCAAAGCATGGGGATTTGGATTGGGGACATGAAAAGAGAAACAAAGTATCCTGACAATGTGGTAACTAAATCACTCAAGGCCCTTCAAGGCAGAGGCCTGATTAAACTAGTTGAACACTATCAAAACAAAGGGAAGAAATTCTACCTGTCAAAAGATTTCGAACCATCGAAAGAACTGACCGGCGGTAATTGGTACAGCGATGGAAAGCTCGACAGAGAATACATCAGTACTCTTAAAGGGTTCTGTGCTAGAATGATACAGAAGATGAAGGTGGCTACAATTGAAGGGATCGTGGACTCATTCAAGAAGAGCGGAGCGTCCAAAGTGGACTTGTCTAGGGAGCAAATTGAAGAGATTGTAAATGCTTTGGTGTTGGACAATGAAGTGATGGAGGTGAAGAGCACTGGCGCAGGGGAGTTTGATTTTATTCCTGTTGGGAAGATTTGTTATAAGAGCTATGCTAAAGGAGTTAAAGGGGAGCCCAAAACAGGGGCTATGGCTTCTACTCCTTGTGGAGTCTGTCCAAGGATTAATCATTGCACCCCAAATGGCATCATTTCGCCTAGGACTTGTGTGTATTACACCAAGTGGTTAGAATTTTAGGTTTGAAGCTTTCTGAGGTTGGTTTTAAGAGAACGAGTGGCCGCGAATTTCCCCTCTAACCATACGAACTATGCTCGACTTGGCAATTCTAGAAAAGTTTTAGCTGTCTATTCTTTATTGTGTTCATAATCT ATGAGCAGATCACAAGGGCCTTCATCACTCAAAAGAAAAAGGCCAGAACCAGCTCATGGCCATGGAGGAGCTCTCATTGAGCATGAAAAAGTGCTGTATGACCTGATTTGCAGCAAGCAAAGCATGGGGATTTGGATTGGGGACATGAAAAGAGAAACAAAGTATCCTGACAATGTGGTAACTAAATCACTCAAGGCCCTTCAAGGCAGAGGCCTGATTAAACTAGTTGAACACTATCAAAACAAAGGGAAGAAATTCTACCTGTCAAAAGATTTCGAACCATCGAAAGAACTGACCGGCGGTAATTGGTACAGCGATGGAAAGCTCGACAGAGAATACATCAGTACTCTTAAAGGGTTCTGTGCTAGAATGATACAGAAGATGAAGGTGGCTACAATTGAAGGGATCGTGGACTCATTCAAGAAGAGCGGAGCGTCCAAAGTGGACTTGTCTAGGGAGCAAATTGAAGAGATTGTAAATGCTTTGGTGTTGGACAATGAAGTGATGGAGGTGAAGAGCACTGGCGCAGGGGAGTTTGATTTTATTCCTGTTGGGAAGATTTGTTATAAGAGCTATGCTAAAGGAGTTAAAGGGGAGCCCAAAACAGGGGCTATGGCTTCTACTCCTTGTGGAGTCTGTCCAAGGATTAATCATTGCACCCCAAATGGCATCATTTCGCCTAGGACTTGTGTGTATTACACCAAGTGGTTAGAATTTTAG MSRSQGPSSLKRKRPEPAHGHGGALIEHEKVLYDLICSKQSMGIWIGDMKRETKYPDNVVTKSLKALQGRGLIKLVEHYQNKGKKFYLSKDFEPSKELTGGNWYSDGKLDREYISTLKGFCARMIQKMKVATIEGIVDSFKKSGASKVDLSREQIEEIVNALVLDNEVMEVKSTGAGEFDFIPVGKICYKSYAKGVKGEPKTGAMASTPCGVCPRINHCTPNGIISPRTCVYYTKWLEF Homology
BLAST of Carg13635 vs. NCBI nr
Match: KAG6604735.1 (DNA-directed RNA polymerase III subunit rpc6, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 494.2 bits (1271), Expect = 6.3e-136 Identity = 239/239 (100.00%), Postives = 239/239 (100.00%), Query Frame = 0
BLAST of Carg13635 vs. NCBI nr
Match: XP_022946967.1 (DNA-directed RNA polymerase III subunit rpc6 [Cucurbita moschata] >XP_023532566.1 DNA-directed RNA polymerase III subunit rpc6 [Cucurbita pepo subsp. pepo] >KAG7034865.1 DNA-directed RNA polymerase III subunit rpc6 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 494.2 bits (1271), Expect = 6.3e-136 Identity = 239/239 (100.00%), Postives = 239/239 (100.00%), Query Frame = 0
BLAST of Carg13635 vs. NCBI nr
Match: XP_022970903.1 (DNA-directed RNA polymerase III subunit rpc6 [Cucurbita maxima]) HSP 1 Score: 490.7 bits (1262), Expect = 7.0e-135 Identity = 237/239 (99.16%), Postives = 238/239 (99.58%), Query Frame = 0
BLAST of Carg13635 vs. NCBI nr
Match: XP_022149571.1 (DNA-directed RNA polymerase III subunit rpc6 isoform X1 [Momordica charantia] >XP_022149572.1 DNA-directed RNA polymerase III subunit rpc6 isoform X1 [Momordica charantia]) HSP 1 Score: 444.5 bits (1142), Expect = 5.8e-121 Identity = 215/240 (89.58%), Postives = 230/240 (95.83%), Query Frame = 0
BLAST of Carg13635 vs. NCBI nr
Match: XP_038900531.1 (LOW QUALITY PROTEIN: DNA-directed RNA polymerase III subunit RPC6-like [Benincasa hispida]) HSP 1 Score: 409.5 bits (1051), Expect = 2.1e-110 Identity = 200/238 (84.03%), Postives = 217/238 (91.18%), Query Frame = 0
BLAST of Carg13635 vs. ExPASy Swiss-Prot
Match: Q86JM3 (DNA-directed RNA polymerase III subunit rpc6 OS=Dictyostelium discoideum OX=44689 GN=polr3f PE=3 SV=1) HSP 1 Score: 122.9 bits (307), Expect = 5.0e-27 Identity = 73/240 (30.42%), Postives = 118/240 (49.17%), Query Frame = 0
BLAST of Carg13635 vs. ExPASy Swiss-Prot
Match: Q2T9S3 (DNA-directed RNA polymerase III subunit RPC6 OS=Bos taurus OX=9913 GN=POLR3F PE=2 SV=1) HSP 1 Score: 120.6 bits (301), Expect = 2.5e-26 Identity = 73/229 (31.88%), Postives = 112/229 (48.91%), Query Frame = 0
BLAST of Carg13635 vs. ExPASy Swiss-Prot
Match: Q9H1D9 (DNA-directed RNA polymerase III subunit RPC6 OS=Homo sapiens OX=9606 GN=POLR3F PE=1 SV=1) HSP 1 Score: 119.4 bits (298), Expect = 5.6e-26 Identity = 73/229 (31.88%), Postives = 111/229 (48.47%), Query Frame = 0
BLAST of Carg13635 vs. ExPASy Swiss-Prot
Match: Q921X6 (DNA-directed RNA polymerase III subunit RPC6 OS=Mus musculus OX=10090 GN=Polr3f PE=1 SV=1) HSP 1 Score: 118.2 bits (295), Expect = 1.2e-25 Identity = 73/229 (31.88%), Postives = 111/229 (48.47%), Query Frame = 0
BLAST of Carg13635 vs. ExPASy Swiss-Prot
Match: Q9VD25 (Probable DNA-directed RNA polymerase III subunit RPC6 OS=Drosophila melanogaster OX=7227 GN=CG5380 PE=2 SV=1) HSP 1 Score: 102.1 bits (253), Expect = 9.2e-21 Identity = 63/227 (27.75%), Postives = 101/227 (44.49%), Query Frame = 0
BLAST of Carg13635 vs. ExPASy TrEMBL
Match: A0A6J1G553 (DNA-directed RNA polymerase III subunit rpc6 OS=Cucurbita moschata OX=3662 GN=LOC111450988 PE=3 SV=1) HSP 1 Score: 494.2 bits (1271), Expect = 3.1e-136 Identity = 239/239 (100.00%), Postives = 239/239 (100.00%), Query Frame = 0
BLAST of Carg13635 vs. ExPASy TrEMBL
Match: A0A6J1I599 (DNA-directed RNA polymerase III subunit rpc6 OS=Cucurbita maxima OX=3661 GN=LOC111469737 PE=3 SV=1) HSP 1 Score: 490.7 bits (1262), Expect = 3.4e-135 Identity = 237/239 (99.16%), Postives = 238/239 (99.58%), Query Frame = 0
BLAST of Carg13635 vs. ExPASy TrEMBL
Match: A0A6J1D8D1 (DNA-directed RNA polymerase III subunit rpc6 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111017972 PE=3 SV=1) HSP 1 Score: 444.5 bits (1142), Expect = 2.8e-121 Identity = 215/240 (89.58%), Postives = 230/240 (95.83%), Query Frame = 0
BLAST of Carg13635 vs. ExPASy TrEMBL
Match: A0A6J1D758 (DNA-directed RNA polymerase III subunit rpc6 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111017972 PE=3 SV=1) HSP 1 Score: 380.6 bits (976), Expect = 4.9e-102 Identity = 180/199 (90.45%), Postives = 193/199 (96.98%), Query Frame = 0
BLAST of Carg13635 vs. ExPASy TrEMBL
Match: A0A1S3BL06 (DNA-directed RNA polymerase III subunit rpc6-like OS=Cucumis melo OX=3656 GN=LOC103490992 PE=3 SV=1) HSP 1 Score: 378.3 bits (970), Expect = 2.5e-101 Identity = 185/243 (76.13%), Postives = 213/243 (87.65%), Query Frame = 0
BLAST of Carg13635 vs. TAIR 10
Match: AT5G23710.1 (DNA binding;DNA-directed RNA polymerases ) HSP 1 Score: 201.8 bits (512), Expect = 6.1e-52 Identity = 105/232 (45.26%), Postives = 142/232 (61.21%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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