Carg13631 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg13631
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	transcription elongation factor B polypeptide 3 isoform X2
Location	Carg_Chr02: 308007 .. 311634 (-)
RNA-Seq Expression	Carg13631
Synteny	Carg13631

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAATATGATCCTCCTTGCGTTTATTTATATATTTTATTTCCAAGGATTCTTTATCACTGCGCAAAATAGCAACTTGGGGAAGAATATCGCAACATAGAAAAGGGAAATTACCAGATGATCAGATGACGATTGCTGGCCAATTCGTTCGTATCTAGTTCAACGATCGTGCTTCTGTTTCAACGATTCTCGTCGTCTCCGTCTTCTCAGACTGTCGGTAAGGTCCTTGAGATCTCAATTTCTTGATCTATCGCAGTTCGTATTGTATTTGTTATTGAAATTGAATCAATTTCTTCTTTTTGTTTTCTCTTTTCTTTTAATTTCTGCTTTCTTTTTAGGACGATCGAATAGGATTTCTCTGATCATCATTTTCTTTTTATTGAATACGATCTGTTTTTTCTTGCGTTGTAATACCTACCGGATGAATTTAGGATTGGTATAAGGGAATTATTTTGTTCTATTATATTCTGACATGTTGCTTAAAGCTAAGAGATGTATAATGAATATTCAGGTGCTTCTTTTTGAAGTGTATGGAATTTAGTAATTCAGGGCCAGTTTTTGGTGAAAGAAGTGCTGATATATGAGACGCTTGATTTTTCATGTAGAGCAGTTGGTTACCTTGAGCTATATTTACCAACTTGTTTATCGAATCAGTATTTTGTTTATTGTTCAAAGGATTTGCTGTTGTGTAAATTTAGCGGTTTGTTTTCTTCTTTCTTGTTCTTAGCTTGGCAACCTGAGAAAGAAGAGATGTATCCAGTAAGAAAAGTTCCATCGTTGGTTGATCTTTGCGTTTACAAAGCTATAGATAATCTGAGGTTTCTTGGGGATGTTGGCGAAACTGATTTACATCTTCTAGAGCGGATTTTGCCACATTGCACTGTTGATCAGTTGATGCATGTGGAGAAAAGTTCAGAAGTAAGATTGGATGAATTTGCTTCTTATTTAACTATCTGGTTTCTTTGGTATATATGCTAAATTGAGCATGAATTTATTTTAGGGAAGAGATCTGACTCCAGTTACAGATAAATTGTGGAAAAAATTCTATGAAAGACAATTTGGTAGAGAAAATACCAATATTGTATCTGAGAGGATGCAGAAGAAAAAAGTGGCATTTAGATGGATTCAATTGTATGAGGTAACATTCCTTGTACTTCTTCTCTCCCGCTATTTACTTTGAGATCTGAGTAGTGAATGATGGTTGACATGATAATGATCTATCTGAGGAATTACCATTAAAATGAGACTATCTACTTTCAGGCGAAAATGAAGGACATAGAAAAGAATGAGAGCGAAGCTGCAGATCGAATAAAGCAAAGTTACCTAAAGGAAAATGCTCGTATGTTCTATTCTATTCTATTTTCACTCTCTATTGGATTTCCTCACAATTTTAAATTTAGACTAACAAATAGCTAGATCATGTGATGTATCACGCATTATCTGGTCATTGATGCCCACTCCCATCAATTGTCTGATATTAGAGGTATGCTATAGGTTCATTATGAATAGATGTTCTTGATTTTTTACCTATATTTTAGGAATCAATAATTTTATTGTTATATCAAGTAAATATTTGTTACGGACTGCAATAGCGAAGAGAAACTACTATATAACAATAGCCTTTGGAGGGATATCTCTCTGCCAAGTCCCGCACTAGACACTTCACTAAAATGATTACACCTTCAAGATCCTTAACACTTCTATTTATTACCAAGACACCTCCTAACTAATTACCATTATGTCCTTACTGATCCCCCACGTATAACCCATAGCATACCTTACTAGTACACTCACAATATTTTCTTAACATATGATATTTTGAATATTTTCTTGAACATTTTTAGGGAAACAAAGTCGTCAAATACAGATTTGCAGTAAGGTTCCCCCTGCAAGCAATAAGAGAAGTTTTGGAGGTAAAATCTATCGCTCCTTACATTTGGCTTGGCTTCTGGGTAATAGAGATTTTAAATCTGGCAAGGCTTCGGCTGGCACCATGAAAAGAGAAATTATTAACATGTTATTTTTCTCGTGATTTTCTTAGCAGCTGGATATGGCTCCAACGTGACAAATACTAAGAACAAGCTGCTGAAGAAGTCAAAAATAGAAGTGCTTCAGAGGTAAGACTAGTGAATTTGTTCTCTGGAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAGAGAAAAGAAGGCTATTGAATTGATATCTCAGAGTGGCCAGTCTGAGAATATTGTGAATTTGTCTAATGTGCCTCAAAGAAAATTAAACATTAAATTTGATCCTTCTCCGCTTAGAATCTGATCTGCTGGTCAAGGACATTAATGAAATGGCTTTTTCTATCTATTTGAAAGCTTCTTTACTAAAATAATTCTTGAGCGGCTTTCTTTTGCATGCTTCCGAACAGAAGCAAATGGATGTTGTTCTAACTAGCCGATTTGTAATTTAATCATGGAAGCACGTATTTGTAGATCCTTTGTCACGAGCCCAACCTGACAAAATTTCTAGAAACACTAGTTCTCATTTATATACTGTACCTACCCTTCCATGCATGAAACAAAGCCCCTTTTCCATCTATGTTAAGTGAAAGTTCTCCAATACTGATACTTTCCCTTCTTTGGACAGTCAAGAGATGAAAAATATAAAAGCCTGGCGAAGAAATGCAGTGCAGAAGACTTGTGAGTAAGTTGCATTTCTTAGCGCTATAACTCAATGATTTTGAAACCACCTATTCACTAACTCAATGCTGACGTTCACGTTCCCCTCTAATCTGCAGTATTCCTTCCACAAAGAAGCCAATGTTTTCTGGAAGGGATTCCGCTTCAACTTCTAAGAGTACTACCACTCATATGGCCAGAAAGTGGTAGCACCTTCATTAGCTTTGCTTTGTTTCTTTTACCAATTGTAAGGATCTGTTCTTTCACTCAGCTCCAAGGCTGTCTTATCTTTAATTTAGTTATTTCACATCTCCAGACACTTCTGAAAAGTCATGCCCTGTGAATAACTTTACATTTCGTAGTTGTTTTCCATTTTAATGCAATATTGTTTATTTTACACATTTTTTCTCCTTATGAACTTCATGATGTGGTATGTTATTTAATGACGTGATGATCAGATCTTCCAATCAAGAAGAGAATGATAGTTAATCTTGTTTTGATAAATACGCATTGAGTCTTGTAGAATATTATGAACCTTACTTTAGAAGTTCATTCACTTAAAACGTCGAGATTCCTCGTTTGAAGAATATCCAGAGGATGCTTAAGAGGTCTCTGGAATTGATGCATCCTTCTACCGAATTTTGGGGCTTCATCTGAATTTTTGTTTACTCAACCTTTCAATCATGTTGTTTCAATAATTGAGTGGACGTTTATGGTTCCCATTGATTGTAGCCTCCCGAGTTGAACGACAGGCAGTCAATTTTAAGCCAAGATAAGTCGGTCTTCAGAGCTCTATAAGAGGCTGTGACCTTTAAGATCATACAATACAATGGCACATTTTCTTTTTGGTTCATGTTGGAAAGGTGTCCTGCCAAAGCCAGCTTTTTGAATGTGGTTTAGACCTCGACAATGTTCAGAGTTAGCATCATATAGTTGACATGATGACCATGAGAGAGTGAAAACAGAGAAGAATGCTAA

mRNA sequence

AAAAAATATGATCCTCCTTGCGTTTATTTATATATTTTATTTCCAAGGATTCTTTATCACTGCGCAAAATAGCAACTTGGGGAAGAATATCGCAACATAGAAAAGGGAAATTACCAGATGATCAGATGACGATTGCTGGCCAATTCGTTCGTATCTAGTTCAACGATCGTGCTTCTGTTTCAACGATTCTCGTCGTCTCCGTCTTCTCAGACTGTCGCTTGGCAACCTGAGAAAGAAGAGATGTATCCAGTAAGAAAAGTTCCATCGTTGGTTGATCTTTGCGTTTACAAAGCTATAGATAATCTGAGGTTTCTTGGGGATGTTGGCGAAACTGATTTACATCTTCTAGAGCGGATTTTGCCACATTGCACTGTTGATCAGTTGATGCATGTGGAGAAAAGTTCAGAAGGAAGAGATCTGACTCCAGTTACAGATAAATTGTGGAAAAAATTCTATGAAAGACAATTTGGTAGAGAAAATACCAATATTGTATCTGAGAGGATGCAGAAGAAAAAAGTGGCATTTAGATGGATTCAATTGTATGAGGCGAAAATGAAGGACATAGAAAAGAATGAGAGCGAAGCTGCAGATCGAATAAAGCAAAGTTACCTAAAGGAAAATGCTCGGAAACAAAGTCGTCAAATACAGATTTGCAGTAAGGTTCCCCCTGCAAGCAATAAGAGAAGTTTTGGAGGTAAAATCTATCGCTCCTTACATTTGGCTTGGCTTCTGGCAGCTGGATATGGCTCCAACGTGACAAATACTAAGAACAAGCTGCTGAAGAAGTCAAAAATAGAAGTGCTTCAGAGTCAAGAGATGAAAAATATAAAAGCCTGGCGAAGAAATGCAGTGCAGAAGACTTGTGATATTCCTTCCACAAAGAAGCCAATGTTTTCTGGAAGGGATTCCGCTTCAACTTCTAAGAGTACTACCACTCATATGGCCAGAAAGTGGTAGCACCTTCATTAGCTTTGCTTTGTTTCTTTTACCAATTGTAAGGATCTGTTCTTTCACTCAGCTCCAAGGCTGTCTTATCTTTAATTTAGTTATTTCACATCTCCAGACACTTCTGAAAAGTCATGCCCTGTGAATAACTTTACATTTCGTAGTTGTTTTCCATTTTAATGCAATATTGTTTATTTTACACATTTTTTCTCCTTATGAACTTCATGATGTGGTATGTTATTTAATGACGTGATGATCAGATCTTCCAATCAAGAAGAGAATGATAGTTAATCTTGTTTTGATAAATACGCATTGAGTCTTGTAGAATATTATGAACCTTACTTTAGAAGTTCATTCACTTAAAACGTCGAGATTCCTCGTTTGAAGAATATCCAGAGGATGCTTAAGAGGTCTCTGGAATTGATGCATCCTTCTACCGAATTTTGGGGCTTCATCTGAATTTTTGTTTACTCAACCTTTCAATCATGTTGTTTCAATAATTGAGTGGACGTTTATGGTTCCCATTGATTGTAGCCTCCCGAGTTGAACGACAGGCAGTCAATTTTAAGCCAAGATAAGTCGGTCTTCAGAGCTCTATAAGAGGCTGTGACCTTTAAGATCATACAATACAATGGCACATTTTCTTTTTGGTTCATGTTGGAAAGGTGTCCTGCCAAAGCCAGCTTTTTGAATGTGGTTTAGACCTCGACAATGTTCAGAGTTAGCATCATATAGTTGACATGATGACCATGAGAGAGTGAAAACAGAGAAGAATGCTAA

Coding sequence (CDS)

ATGTATCCAGTAAGAAAAGTTCCATCGTTGGTTGATCTTTGCGTTTACAAAGCTATAGATAATCTGAGGTTTCTTGGGGATGTTGGCGAAACTGATTTACATCTTCTAGAGCGGATTTTGCCACATTGCACTGTTGATCAGTTGATGCATGTGGAGAAAAGTTCAGAAGGAAGAGATCTGACTCCAGTTACAGATAAATTGTGGAAAAAATTCTATGAAAGACAATTTGGTAGAGAAAATACCAATATTGTATCTGAGAGGATGCAGAAGAAAAAAGTGGCATTTAGATGGATTCAATTGTATGAGGCGAAAATGAAGGACATAGAAAAGAATGAGAGCGAAGCTGCAGATCGAATAAAGCAAAGTTACCTAAAGGAAAATGCTCGGAAACAAAGTCGTCAAATACAGATTTGCAGTAAGGTTCCCCCTGCAAGCAATAAGAGAAGTTTTGGAGGTAAAATCTATCGCTCCTTACATTTGGCTTGGCTTCTGGCAGCTGGATATGGCTCCAACGTGACAAATACTAAGAACAAGCTGCTGAAGAAGTCAAAAATAGAAGTGCTTCAGAGTCAAGAGATGAAAAATATAAAAGCCTGGCGAAGAAATGCAGTGCAGAAGACTTGTGATATTCCTTCCACAAAGAAGCCAATGTTTTCTGGAAGGGATTCCGCTTCAACTTCTAAGAGTACTACCACTCATATGGCCAGAAAGTGGTAG

Protein sequence

MYPVRKVPSLVDLCVYKAIDNLRFLGDVGETDLHLLERILPHCTVDQLMHVEKSSEGRDLTPVTDKLWKKFYERQFGRENTNIVSERMQKKKVAFRWIQLYEAKMKDIEKNESEAADRIKQSYLKENARKQSRQIQICSKVPPASNKRSFGGKIYRSLHLAWLLAAGYGSNVTNTKNKLLKKSKIEVLQSQEMKNIKAWRRNAVQKTCDIPSTKKPMFSGRDSASTSKSTTTHMARKW

Homology

[Close]

BLAST of Carg13631 vs. NCBI nr
Match: KAG7034869.1 (hypothetical protein SDJN02_01662 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 473.0 bits (1216), Expect = 1.5e-129
Identity = 238/238 (100.00%), Postives = 238/238 (100.00%), Query Frame = 0


Query: 1   MYPVRKVPSLVDLCVYKAIDNLRFLGDVGETDLHLLERILPHCTVDQLMHVEKSSEGRDL 60
           MYPVRKVPSLVDLCVYKAIDNLRFLGDVGETDLHLLERILPHCTVDQLMHVEKSSEGRDL
Sbjct: 1   MYPVRKVPSLVDLCVYKAIDNLRFLGDVGETDLHLLERILPHCTVDQLMHVEKSSEGRDL 60

Query: 61  TPVTDKLWKKFYERQFGRENTNIVSERMQKKKVAFRWIQLYEAKMKDIEKNESEAADRIK 120
           TPVTDKLWKKFYERQFGRENTNIVSERMQKKKVAFRWIQLYEAKMKDIEKNESEAADRIK
Sbjct: 61  TPVTDKLWKKFYERQFGRENTNIVSERMQKKKVAFRWIQLYEAKMKDIEKNESEAADRIK 120

Query: 121 QSYLKENARKQSRQIQICSKVPPASNKRSFGGKIYRSLHLAWLLAAGYGSNVTNTKNKLL 180
           QSYLKENARKQSRQIQICSKVPPASNKRSFGGKIYRSLHLAWLLAAGYGSNVTNTKNKLL
Sbjct: 121 QSYLKENARKQSRQIQICSKVPPASNKRSFGGKIYRSLHLAWLLAAGYGSNVTNTKNKLL 180

Query: 181 KKSKIEVLQSQEMKNIKAWRRNAVQKTCDIPSTKKPMFSGRDSASTSKSTTTHMARKW 239
           KKSKIEVLQSQEMKNIKAWRRNAVQKTCDIPSTKKPMFSGRDSASTSKSTTTHMARKW
Sbjct: 181 KKSKIEVLQSQEMKNIKAWRRNAVQKTCDIPSTKKPMFSGRDSASTSKSTTTHMARKW 238

[Close]

BLAST of Carg13631 vs. NCBI nr
Match: XP_022948140.1 (transcription elongation factor B polypeptide 3 isoform X1 [Cucurbita moschata] >XP_022948141.1 transcription elongation factor B polypeptide 3 isoform X1 [Cucurbita moschata])

HSP 1 Score: 436.4 bits (1121), Expect = 1.6e-118
Identity = 225/238 (94.54%), Postives = 225/238 (94.54%), Query Frame = 0


Query: 1   MYPVRKVPSLVDLCVYKAIDNLRFLGDVGETDLHLLERILPHCTVDQLMHVEKSSEGRDL 60
           MYPVRKVPSLVDLCVYKAIDNLRFLGDVGETDLHLLERILPHCTVDQLMHVEKSSEGRDL
Sbjct: 1   MYPVRKVPSLVDLCVYKAIDNLRFLGDVGETDLHLLERILPHCTVDQLMHVEKSSEGRDL 60

Query: 61  TPVTDKLWKKFYERQFGRENTNIVSERMQKKKVAFRWIQLYEAKMKDIEKNESEAADRIK 120
           TPVTDKLWKKFYERQFGRENTNIVSERMQKKKVAFRWIQLYEAKMKDIEKNESEAADRIK
Sbjct: 61  TPVTDKLWKKFYERQFGRENTNIVSERMQKKKVAFRWIQLYEAKMKDIEKNESEAADRIK 120

Query: 121 QSYLKENARKQSRQIQICSKVPPASNKRSFGGKIYRSLHLAWLLAAGYGSNVTNTKNKLL 180
           QSYLKENARKQSRQIQICSKVPPASNKRSFG             AAGYGSNVTNTKNKLL
Sbjct: 121 QSYLKENARKQSRQIQICSKVPPASNKRSFG-------------AAGYGSNVTNTKNKLL 180

Query: 181 KKSKIEVLQSQEMKNIKAWRRNAVQKTCDIPSTKKPMFSGRDSASTSKSTTTHMARKW 239
           KKSKIEVLQSQEMKNIKAWRRNAVQKTCDIPSTKKPMFSGRDSASTSKSTTTHMARKW
Sbjct: 181 KKSKIEVLQSQEMKNIKAWRRNAVQKTCDIPSTKKPMFSGRDSASTSKSTTTHMARKW 225

[Close]

BLAST of Carg13631 vs. NCBI nr
Match: KAG6604740.1 (hypothetical protein SDJN03_02057, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 434.5 bits (1116), Expect = 5.9e-118
Identity = 224/238 (94.12%), Postives = 224/238 (94.12%), Query Frame = 0


Query: 1   MYPVRKVPSLVDLCVYKAIDNLRFLGDVGETDLHLLERILPHCTVDQLMHVEKSSEGRDL 60
           MYPVRKVPSLVDLCVYKAIDNLRFLGDVGETDLHLLERILPHCTVDQLMHVEKSSEGRDL
Sbjct: 33  MYPVRKVPSLVDLCVYKAIDNLRFLGDVGETDLHLLERILPHCTVDQLMHVEKSSEGRDL 92

Query: 61  TPVTDKLWKKFYERQFGRENTNIVSERMQKKKVAFRWIQLYEAKMKDIEKNESEAADRIK 120
           TPVTDKLWKKFYERQFGRENTNIVSERMQKKKVAFRWIQLYEAKMKDIEKNESEAADRIK
Sbjct: 93  TPVTDKLWKKFYERQFGRENTNIVSERMQKKKVAFRWIQLYEAKMKDIEKNESEAADRIK 152

Query: 121 QSYLKENARKQSRQIQICSKVPPASNKRSFGGKIYRSLHLAWLLAAGYGSNVTNTKNKLL 180
           QSYLKENARKQSRQIQICSKVPPASNKRSFG              AGYGSNVTNTKNKLL
Sbjct: 153 QSYLKENARKQSRQIQICSKVPPASNKRSFG--------------AGYGSNVTNTKNKLL 212

Query: 181 KKSKIEVLQSQEMKNIKAWRRNAVQKTCDIPSTKKPMFSGRDSASTSKSTTTHMARKW 239
           KKSKIEVLQSQEMKNIKAWRRNAVQKTCDIPSTKKPMFSGRDSASTSKSTTTHMARKW
Sbjct: 213 KKSKIEVLQSQEMKNIKAWRRNAVQKTCDIPSTKKPMFSGRDSASTSKSTTTHMARKW 256

[Close]

BLAST of Carg13631 vs. NCBI nr
Match: XP_022948143.1 (transcription elongation factor B polypeptide 3 isoform X2 [Cucurbita moschata])

HSP 1 Score: 434.5 bits (1116), Expect = 5.9e-118
Identity = 224/238 (94.12%), Postives = 224/238 (94.12%), Query Frame = 0


Query: 1   MYPVRKVPSLVDLCVYKAIDNLRFLGDVGETDLHLLERILPHCTVDQLMHVEKSSEGRDL 60
           MYPVRKVPSLVDLCVYKAIDNLRFLGDVGETDLHLLERILPHCTVDQLMHVEKSSEGRDL
Sbjct: 1   MYPVRKVPSLVDLCVYKAIDNLRFLGDVGETDLHLLERILPHCTVDQLMHVEKSSEGRDL 60

Query: 61  TPVTDKLWKKFYERQFGRENTNIVSERMQKKKVAFRWIQLYEAKMKDIEKNESEAADRIK 120
           TPVTDKLWKKFYERQFGRENTNIVSERMQKKKVAFRWIQLYEAKMKDIEKNESEAADRIK
Sbjct: 61  TPVTDKLWKKFYERQFGRENTNIVSERMQKKKVAFRWIQLYEAKMKDIEKNESEAADRIK 120

Query: 121 QSYLKENARKQSRQIQICSKVPPASNKRSFGGKIYRSLHLAWLLAAGYGSNVTNTKNKLL 180
           QSYLKENARKQSRQIQICSKVPPASNKRSFG              AGYGSNVTNTKNKLL
Sbjct: 121 QSYLKENARKQSRQIQICSKVPPASNKRSFG--------------AGYGSNVTNTKNKLL 180

Query: 181 KKSKIEVLQSQEMKNIKAWRRNAVQKTCDIPSTKKPMFSGRDSASTSKSTTTHMARKW 239
           KKSKIEVLQSQEMKNIKAWRRNAVQKTCDIPSTKKPMFSGRDSASTSKSTTTHMARKW
Sbjct: 181 KKSKIEVLQSQEMKNIKAWRRNAVQKTCDIPSTKKPMFSGRDSASTSKSTTTHMARKW 224

[Close]

BLAST of Carg13631 vs. NCBI nr
Match: XP_022970776.1 (transcription elongation factor B polypeptide 3 isoform X1 [Cucurbita maxima] >XP_022970777.1 transcription elongation factor B polypeptide 3 isoform X1 [Cucurbita maxima])

HSP 1 Score: 434.5 bits (1116), Expect = 5.9e-118
Identity = 224/238 (94.12%), Postives = 225/238 (94.54%), Query Frame = 0


Query: 1   MYPVRKVPSLVDLCVYKAIDNLRFLGDVGETDLHLLERILPHCTVDQLMHVEKSSEGRDL 60
           MYPVRKVPSLVDLCVYKAIDNLRFLGDVGETDLHLLERILPHCTVDQLMHVEKSSEGRDL
Sbjct: 1   MYPVRKVPSLVDLCVYKAIDNLRFLGDVGETDLHLLERILPHCTVDQLMHVEKSSEGRDL 60

Query: 61  TPVTDKLWKKFYERQFGRENTNIVSERMQKKKVAFRWIQLYEAKMKDIEKNESEAADRIK 120
           TPVTDKLWKKFYERQFGRE+TNIVSERMQKKKVAFRWIQLYEAKMKDIEKNESEAADRIK
Sbjct: 61  TPVTDKLWKKFYERQFGRESTNIVSERMQKKKVAFRWIQLYEAKMKDIEKNESEAADRIK 120

Query: 121 QSYLKENARKQSRQIQICSKVPPASNKRSFGGKIYRSLHLAWLLAAGYGSNVTNTKNKLL 180
           QSYLKENARKQSRQIQICSKVPPASNKRSFG             AAGYGSNVTNTKNKLL
Sbjct: 121 QSYLKENARKQSRQIQICSKVPPASNKRSFG-------------AAGYGSNVTNTKNKLL 180

Query: 181 KKSKIEVLQSQEMKNIKAWRRNAVQKTCDIPSTKKPMFSGRDSASTSKSTTTHMARKW 239
           KKSKIEVLQSQEMKNIKAWRRNAVQKTCDIPSTKKPMFSGRDSASTSKSTTTHMARKW
Sbjct: 181 KKSKIEVLQSQEMKNIKAWRRNAVQKTCDIPSTKKPMFSGRDSASTSKSTTTHMARKW 225

[Close]

BLAST of Carg13631 vs. ExPASy TrEMBL
Match: A0A6J1G8W9 (transcription elongation factor B polypeptide 3 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111451808 PE=4 SV=1)

HSP 1 Score: 436.4 bits (1121), Expect = 7.6e-119
Identity = 225/238 (94.54%), Postives = 225/238 (94.54%), Query Frame = 0


Query: 1   MYPVRKVPSLVDLCVYKAIDNLRFLGDVGETDLHLLERILPHCTVDQLMHVEKSSEGRDL 60
           MYPVRKVPSLVDLCVYKAIDNLRFLGDVGETDLHLLERILPHCTVDQLMHVEKSSEGRDL
Sbjct: 1   MYPVRKVPSLVDLCVYKAIDNLRFLGDVGETDLHLLERILPHCTVDQLMHVEKSSEGRDL 60

Query: 61  TPVTDKLWKKFYERQFGRENTNIVSERMQKKKVAFRWIQLYEAKMKDIEKNESEAADRIK 120
           TPVTDKLWKKFYERQFGRENTNIVSERMQKKKVAFRWIQLYEAKMKDIEKNESEAADRIK
Sbjct: 61  TPVTDKLWKKFYERQFGRENTNIVSERMQKKKVAFRWIQLYEAKMKDIEKNESEAADRIK 120

Query: 121 QSYLKENARKQSRQIQICSKVPPASNKRSFGGKIYRSLHLAWLLAAGYGSNVTNTKNKLL 180
           QSYLKENARKQSRQIQICSKVPPASNKRSFG             AAGYGSNVTNTKNKLL
Sbjct: 121 QSYLKENARKQSRQIQICSKVPPASNKRSFG-------------AAGYGSNVTNTKNKLL 180

Query: 181 KKSKIEVLQSQEMKNIKAWRRNAVQKTCDIPSTKKPMFSGRDSASTSKSTTTHMARKW 239
           KKSKIEVLQSQEMKNIKAWRRNAVQKTCDIPSTKKPMFSGRDSASTSKSTTTHMARKW
Sbjct: 181 KKSKIEVLQSQEMKNIKAWRRNAVQKTCDIPSTKKPMFSGRDSASTSKSTTTHMARKW 225

[Close]

BLAST of Carg13631 vs. ExPASy TrEMBL
Match: A0A6J1I1I3 (transcription elongation factor B polypeptide 3 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111469662 PE=4 SV=1)

HSP 1 Score: 434.5 bits (1116), Expect = 2.9e-118
Identity = 224/238 (94.12%), Postives = 225/238 (94.54%), Query Frame = 0


Query: 1   MYPVRKVPSLVDLCVYKAIDNLRFLGDVGETDLHLLERILPHCTVDQLMHVEKSSEGRDL 60
           MYPVRKVPSLVDLCVYKAIDNLRFLGDVGETDLHLLERILPHCTVDQLMHVEKSSEGRDL
Sbjct: 1   MYPVRKVPSLVDLCVYKAIDNLRFLGDVGETDLHLLERILPHCTVDQLMHVEKSSEGRDL 60

Query: 61  TPVTDKLWKKFYERQFGRENTNIVSERMQKKKVAFRWIQLYEAKMKDIEKNESEAADRIK 120
           TPVTDKLWKKFYERQFGRE+TNIVSERMQKKKVAFRWIQLYEAKMKDIEKNESEAADRIK
Sbjct: 61  TPVTDKLWKKFYERQFGRESTNIVSERMQKKKVAFRWIQLYEAKMKDIEKNESEAADRIK 120

Query: 121 QSYLKENARKQSRQIQICSKVPPASNKRSFGGKIYRSLHLAWLLAAGYGSNVTNTKNKLL 180
           QSYLKENARKQSRQIQICSKVPPASNKRSFG             AAGYGSNVTNTKNKLL
Sbjct: 121 QSYLKENARKQSRQIQICSKVPPASNKRSFG-------------AAGYGSNVTNTKNKLL 180

Query: 181 KKSKIEVLQSQEMKNIKAWRRNAVQKTCDIPSTKKPMFSGRDSASTSKSTTTHMARKW 239
           KKSKIEVLQSQEMKNIKAWRRNAVQKTCDIPSTKKPMFSGRDSASTSKSTTTHMARKW
Sbjct: 181 KKSKIEVLQSQEMKNIKAWRRNAVQKTCDIPSTKKPMFSGRDSASTSKSTTTHMARKW 225

[Close]

BLAST of Carg13631 vs. ExPASy TrEMBL
Match: A0A6J1G8K1 (transcription elongation factor B polypeptide 3 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111451808 PE=4 SV=1)

HSP 1 Score: 434.5 bits (1116), Expect = 2.9e-118
Identity = 224/238 (94.12%), Postives = 224/238 (94.12%), Query Frame = 0


Query: 1   MYPVRKVPSLVDLCVYKAIDNLRFLGDVGETDLHLLERILPHCTVDQLMHVEKSSEGRDL 60
           MYPVRKVPSLVDLCVYKAIDNLRFLGDVGETDLHLLERILPHCTVDQLMHVEKSSEGRDL
Sbjct: 1   MYPVRKVPSLVDLCVYKAIDNLRFLGDVGETDLHLLERILPHCTVDQLMHVEKSSEGRDL 60

Query: 61  TPVTDKLWKKFYERQFGRENTNIVSERMQKKKVAFRWIQLYEAKMKDIEKNESEAADRIK 120
           TPVTDKLWKKFYERQFGRENTNIVSERMQKKKVAFRWIQLYEAKMKDIEKNESEAADRIK
Sbjct: 61  TPVTDKLWKKFYERQFGRENTNIVSERMQKKKVAFRWIQLYEAKMKDIEKNESEAADRIK 120

Query: 121 QSYLKENARKQSRQIQICSKVPPASNKRSFGGKIYRSLHLAWLLAAGYGSNVTNTKNKLL 180
           QSYLKENARKQSRQIQICSKVPPASNKRSFG              AGYGSNVTNTKNKLL
Sbjct: 121 QSYLKENARKQSRQIQICSKVPPASNKRSFG--------------AGYGSNVTNTKNKLL 180

Query: 181 KKSKIEVLQSQEMKNIKAWRRNAVQKTCDIPSTKKPMFSGRDSASTSKSTTTHMARKW 239
           KKSKIEVLQSQEMKNIKAWRRNAVQKTCDIPSTKKPMFSGRDSASTSKSTTTHMARKW
Sbjct: 181 KKSKIEVLQSQEMKNIKAWRRNAVQKTCDIPSTKKPMFSGRDSASTSKSTTTHMARKW 224

[Close]

BLAST of Carg13631 vs. ExPASy TrEMBL
Match: A0A6J1I4W9 (transcription elongation factor B polypeptide 3 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111469662 PE=4 SV=1)

HSP 1 Score: 432.6 bits (1111), Expect = 1.1e-117
Identity = 223/238 (93.70%), Postives = 224/238 (94.12%), Query Frame = 0


Query: 1   MYPVRKVPSLVDLCVYKAIDNLRFLGDVGETDLHLLERILPHCTVDQLMHVEKSSEGRDL 60
           MYPVRKVPSLVDLCVYKAIDNLRFLGDVGETDLHLLERILPHCTVDQLMHVEKSSEGRDL
Sbjct: 1   MYPVRKVPSLVDLCVYKAIDNLRFLGDVGETDLHLLERILPHCTVDQLMHVEKSSEGRDL 60

Query: 61  TPVTDKLWKKFYERQFGRENTNIVSERMQKKKVAFRWIQLYEAKMKDIEKNESEAADRIK 120
           TPVTDKLWKKFYERQFGRE+TNIVSERMQKKKVAFRWIQLYEAKMKDIEKNESEAADRIK
Sbjct: 61  TPVTDKLWKKFYERQFGRESTNIVSERMQKKKVAFRWIQLYEAKMKDIEKNESEAADRIK 120

Query: 121 QSYLKENARKQSRQIQICSKVPPASNKRSFGGKIYRSLHLAWLLAAGYGSNVTNTKNKLL 180
           QSYLKENARKQSRQIQICSKVPPASNKRSFG              AGYGSNVTNTKNKLL
Sbjct: 121 QSYLKENARKQSRQIQICSKVPPASNKRSFG--------------AGYGSNVTNTKNKLL 180

Query: 181 KKSKIEVLQSQEMKNIKAWRRNAVQKTCDIPSTKKPMFSGRDSASTSKSTTTHMARKW 239
           KKSKIEVLQSQEMKNIKAWRRNAVQKTCDIPSTKKPMFSGRDSASTSKSTTTHMARKW
Sbjct: 181 KKSKIEVLQSQEMKNIKAWRRNAVQKTCDIPSTKKPMFSGRDSASTSKSTTTHMARKW 224

[Close]

BLAST of Carg13631 vs. ExPASy TrEMBL
Match: A0A5D3BGR1 (Transcription elongation factor B polypeptide 3 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold203G00180 PE=4 SV=1)

HSP 1 Score: 389.0 bits (998), Expect = 1.4e-104
Identity = 196/238 (82.35%), Postives = 216/238 (90.76%), Query Frame = 0


Query: 1   MYPVRKVPSLVDLCVYKAIDNLRFLGDVGETDLHLLERILPHCTVDQLMHVEKSSEGRDL 60
           MY VRK+PSLVDLCV KAIDN+RFLGDVGETD+HLLERILPHCTVDQLMHVEKSSEGRDL
Sbjct: 1   MYRVRKIPSLVDLCVNKAIDNIRFLGDVGETDIHLLERILPHCTVDQLMHVEKSSEGRDL 60

Query: 61  TPVTDKLWKKFYERQFGRENTNIVSERMQKKKVAFRWIQLYEAKMKDIEKNESEAADRIK 120
           TPVTDKLWKKFYERQFG+E+T  V ERM++K+VAFRWIQLYEAKM+DIEKNES+AADRIK
Sbjct: 61  TPVTDKLWKKFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKMQDIEKNESKAADRIK 120

Query: 121 QSYLKENARKQSRQIQICSKVPPASNKRSFGGKIYRSLHLAWLLAAGYGSNVTNTKNKLL 180
           QSYLKENARKQSRQIQICSKVPP+SNKRSFGG             +GYG NV NTKNK+L
Sbjct: 121 QSYLKENARKQSRQIQICSKVPPSSNKRSFGG-------------SGYGYNVANTKNKIL 180

Query: 181 KKSKIEVLQSQEMKNIKAWRRNAVQKTCDIPSTKKPMFSGRDSASTSKSTTTHMARKW 239
           KK+KIEVLQSQEMKNIKAWRRNAVQK+ DIPSTKKPMF GR+SASTSK+T+THMA++W
Sbjct: 181 KKAKIEVLQSQEMKNIKAWRRNAVQKSSDIPSTKKPMFPGRESASTSKNTSTHMAKRW 225

[Close]

BLAST of Carg13631 vs. TAIR 10
Match: AT2G42780.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription; LOCATED IN: integral to membrane, nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase II transcription factor SIII, subunit A (InterPro:IPR010684); Has 187 Blast hits to 186 proteins in 77 species: Archae - 0; Bacteria - 0; Metazoa - 104; Fungi - 29; Plants - 38; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink). )

HSP 1 Score: 185.3 bits (469), Expect = 5.8e-47
Identity = 102/226 (45.13%), Postives = 151/226 (66.81%), Query Frame = 0


Query: 5   RKVPSLVDLCVYKAIDNLRFLGDVGETDLHLLERILPHCTVDQLMHVEKSSEGRDLTPVT 64
           +K PSLVDLCV KAIDN++++G VG  D  LLE+IL HCT++QL H+E +++  DL+P+T
Sbjct: 8   KKPPSLVDLCVRKAIDNVKYIGYVGGVDFQLLEQILQHCTLEQLKHIEDATDDTDLSPIT 67

Query: 65  DKLWKKFYERQFGRENTNIVSERMQKKKV-AFRWIQLYEAKMKDIEKNESEAADRIKQSY 124
           DK WK FY++ +G E+   + E ++  KV  F+W  LYE K+  +++ E E   R+K+ Y
Sbjct: 68  DKFWKGFYKKHYGEEDMKDLIEDLEWNKVNDFKWRNLYELKVIAVQQKEKELGGRLKERY 127

Query: 125 LKENARKQSRQIQICSKVPPASNKRSFGGKIYRSLHLAWLLAAGYGSNVTNTKNKLLKKS 184
             EN RKQSRQ ++CSK PP  +KR F G            A+GY  N+ + K+ ++KK+
Sbjct: 128 KDENERKQSRQTKVCSKAPP--SKRPFWGN----------SASGY--NLGHVKSNIMKKA 187

Query: 185 KIEVLQSQEMKNIKAWRRNAVQKTCDIPSTKKPMFSGRDSASTSKS 230
           KI++L+SQE+KN+ A +RN +QK+  I + KK   S  +S STS+S
Sbjct: 188 KIDLLKSQEVKNLTAIKRNTIQKSFSISTPKKTGLSA-NSPSTSRS 218

[Close]

BLAST of Carg13631 vs. TAIR 10
Match: AT2G42780.2 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription; LOCATED IN: integral to membrane, nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase II transcription factor SIII, subunit A (InterPro:IPR010684). )

HSP 1 Score: 183.0 bits (463), Expect = 2.9e-46
Identity = 100/226 (44.25%), Postives = 151/226 (66.81%), Query Frame = 0


Query: 5   RKVPSLVDLCVYKAIDNLRFLGDVGETDLHLLERILPHCTVDQLMHVEKSSEGRDLTPVT 64
           +K PSLVDLCV KAIDN++++G VG  D  LLE+IL HCT++QL H+E +++  DL+P+T
Sbjct: 8   KKPPSLVDLCVRKAIDNVKYIGYVGGVDFQLLEQILQHCTLEQLKHIEDATDDTDLSPIT 67

Query: 65  DKLWKKFYERQFGRENTNIVSERMQKKKV-AFRWIQLYEAKMKDIEKNESEAADRIKQSY 124
           DK WK FY++ +G E+   + E ++  KV  F+W  LYE K+  +++ E E   R+K+ Y
Sbjct: 68  DKFWKGFYKKHYGEEDMKDLIEDLEWNKVNDFKWRNLYELKVIAVQQKEKELGGRLKERY 127

Query: 125 LKENARKQSRQIQICSKVPPASNKRSFGGKIYRSLHLAWLLAAGYGSNVTNTKNKLLKKS 184
             EN RKQSRQ ++CSK PP  +KR F G            A+GY  N+ + K+ ++KK+
Sbjct: 128 KDENERKQSRQTKVCSKAPP--SKRPFWGN----------SASGY--NLGHVKSNIMKKA 187

Query: 185 KIEVLQSQEMKNIKAWRRNAVQKTCDIPSTKKPMFSGRDSASTSKS 230
           KI++L+SQE+KN+ A +RN +QK+  I + K+   S  ++ STS+S
Sbjct: 188 KIDLLKSQEVKNLTAIKRNTIQKSFSISAPKRTGLSA-NAPSTSRS 218

The following BLAST results are available for this feature:

BLAST of Carg13631 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7034869.1	1.5e-129	100.00	hypothetical protein SDJN02_01662 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022948140.1	1.6e-118	94.54	transcription elongation factor B polypeptide 3 isoform X1 [Cucurbita moschata] ...	[more]
KAG6604740.1	5.9e-118	94.12	hypothetical protein SDJN03_02057, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022948143.1	5.9e-118	94.12	transcription elongation factor B polypeptide 3 isoform X2 [Cucurbita moschata]	[more]
XP_022970776.1	5.9e-118	94.12	transcription elongation factor B polypeptide 3 isoform X1 [Cucurbita maxima] >X...	[more]

BLAST of Carg13631 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg13631 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G8W9	7.6e-119	94.54	transcription elongation factor B polypeptide 3 isoform X1 OS=Cucurbita moschata...	[more]
A0A6J1I1I3	2.9e-118	94.12	transcription elongation factor B polypeptide 3 isoform X1 OS=Cucurbita maxima O...	[more]
A0A6J1G8K1	2.9e-118	94.12	transcription elongation factor B polypeptide 3 isoform X2 OS=Cucurbita moschata...	[more]
A0A6J1I4W9	1.1e-117	93.70	transcription elongation factor B polypeptide 3 isoform X2 OS=Cucurbita maxima O...	[more]
A0A5D3BGR1	1.4e-104	82.35	Transcription elongation factor B polypeptide 3 isoform X2 OS=Cucumis melo var. ...	[more]

BLAST of Carg13631 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G42780.1	5.8e-47	45.13	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcripti...	[more]
AT2G42780.2	2.9e-46	44.25	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcripti...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 98..118
None	No IPR available	GENE3D	6.10.250.3180		coord: 21..127 e-value: 8.2E-22 score: 79.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 218..232
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 210..238
None	No IPR available	PANTHER	PTHR47543	OS08G0169600 PROTEIN	coord: 3..233
IPR010684	RNA polymerase II transcription factor SIII, subunit A	PFAM	PF06881	Elongin_A	coord: 26..135 e-value: 2.8E-26 score: 92.1

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg13631-RA	Carg13631-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006368	transcription elongation from RNA polymerase II promoter
biological_process	GO:0006414	translational elongation
cellular_component	GO:0070449	elongin complex
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003746	translation elongation factor activity