Carg13622 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg13622
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	zinc finger CCCH domain-containing protein 3-like
Location	Carg_Chr02: 348084 .. 349141 (-)
RNA-Seq Expression	Carg13622
Synteny	Carg13622

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCAATCAGAGCAATGTCAGTCCTGTTCTTCCCAACCTTGGTTATAATTCTGTCAATTTGGAAGACTCGCATTCTAATGGGCAGTTGGCTTTATCAACATCAACTCTAACGCTACCCGATCGACCTGATCAACCAGAATGCCGTTATTTTATGAACAATGGCACATGCAAATATGGATCTGATTGCAAGTTTCATCATCCGAAACAAAGAATTGCACAATCAGCAACGAATGTGCTTGGGCTTCCTTCAAGACCCGTAAGTGTTCTTATTCTTAATCATACAAAAACTTATGAAATTCCTTTATAGTGGAAATTGAATCATGAATCATTCCAATCACAATGAAGTGTGAAAAGACAGATCAAGTACATACTCTAAATCTCTGCTGCTTGTTGAGTTCCTTTTTGAAATCCATTTAGCTGGTAATCAATCAGTTATATATCTTTATTCCTCATCTCCTACACAGTGATTGATTTCTTACTTGGCTGCTTCATACAGGGGCAAGCTGTATGTTCATACTACAGTATGTATGGGCTCTGCAAGTATGGCCCAAGTTGTAAATTTGACCACCCATCTGCAACATATCCTTATAACTATGGCTTCACTCTGCCTGTGCTCAATTCATCTTTCATGAAGTATCCTAGCAACAACTATACGTTGTCATCGCACGATACCTTGCCCCAGACGATATCCAAATCGTCTGAATGGGTTCAGAAAGCTGATCCTCCGAACAACAAACAGCAAACCACCGATACGAAAGTGGATGATGGCACAGCTGAAGAGGTTTCCTCTGTTTCATGCTCATTATCAGGTGGTTCTGAAAGTTTACAAGATCAATCTGGTTGAAAACCATGGCTATTTTGTTTTATTTTGACTCTGTTGTTTAGTATGTTGTCAAGGAATTACAAATTTTCTTTACTTTATACCTCCCCTATGCCCCAATTTCACCTGTGATAATGTGGGAGTGAAAACAAGTTGCTTGGAGATTTGTTTACTTGAGTCATCTGTTGTGGGGCAGGGGAAGGCATTTTTTGTGTTGAATAAAGTGCAGGTGAAAT

mRNA sequence

ATGTTCAATCAGAGCAATGTCAGTCCTGTTCTTCCCAACCTTGGTTATAATTCTGTCAATTTGGAAGACTCGCATTCTAATGGGCAGTTGGCTTTATCAACATCAACTCTAACGCTACCCGATCGACCTGATCAACCAGAATGCCGTTATTTTATGAACAATGGCACATGCAAATATGGATCTGATTGCAAGTTTCATCATCCGAAACAAAGAATTGCACAATCAGCAACGAATGTGCTTGGGCTTCCTTCAAGACCCGGGCAAGCTGTATGTTCATACTACAGTATGTATGGGCTCTGCAAGTATGGCCCAAGTTGTAAATTTGACCACCCATCTGCAACATATCCTTATAACTATGGCTTCACTCTGCCTGTGCTCAATTCATCTTTCATGAAGTATCCTAGCAACAACTATACGTTGTCATCGCACGATACCTTGCCCCAGACGATATCCAAATCGTCTGAATGGGTTCAGAAAGCTGATCCTCCGAACAACAAACAGCAAACCACCGATACGAAAGTGGATGATGGCACAGCTGAAGAGGTTTCCTCTGTTTCATGCTCATTATCAGGTGGTTCTGAAAGTTTACAAGATCAATCTGGTTGAAAACCATGGCTATTTTGTTTTATTTTGACTCTGTTGTTTAGTATGTTGTCAAGGAATTACAAATTTTCTTTACTTTATACCTCCCCTATGCCCCAATTTCACCTGTGATAATGTGGGAGTGAAAACAAGTTGCTTGGAGATTTGTTTACTTGAGTCATCTGTTGTGGGGCAGGGGAAGGCATTTTTTGTGTTGAATAAAGTGCAGGTGAAAT

Coding sequence (CDS)

ATGTTCAATCAGAGCAATGTCAGTCCTGTTCTTCCCAACCTTGGTTATAATTCTGTCAATTTGGAAGACTCGCATTCTAATGGGCAGTTGGCTTTATCAACATCAACTCTAACGCTACCCGATCGACCTGATCAACCAGAATGCCGTTATTTTATGAACAATGGCACATGCAAATATGGATCTGATTGCAAGTTTCATCATCCGAAACAAAGAATTGCACAATCAGCAACGAATGTGCTTGGGCTTCCTTCAAGACCCGGGCAAGCTGTATGTTCATACTACAGTATGTATGGGCTCTGCAAGTATGGCCCAAGTTGTAAATTTGACCACCCATCTGCAACATATCCTTATAACTATGGCTTCACTCTGCCTGTGCTCAATTCATCTTTCATGAAGTATCCTAGCAACAACTATACGTTGTCATCGCACGATACCTTGCCCCAGACGATATCCAAATCGTCTGAATGGGTTCAGAAAGCTGATCCTCCGAACAACAAACAGCAAACCACCGATACGAAAGTGGATGATGGCACAGCTGAAGAGGTTTCCTCTGTTTCATGCTCATTATCAGGTGGTTCTGAAAGTTTACAAGATCAATCTGGTTGA

Protein sequence

MFNQSNVSPVLPNLGYNSVNLEDSHSNGQLALSTSTLTLPDRPDQPECRYFMNNGTCKYGSDCKFHHPKQRIAQSATNVLGLPSRPGQAVCSYYSMYGLCKYGPSCKFDHPSATYPYNYGFTLPVLNSSFMKYPSNNYTLSSHDTLPQTISKSSEWVQKADPPNNKQQTTDTKVDDGTAEEVSSVSCSLSGGSESLQDQSG

Homology

[Close]

BLAST of Carg13622 vs. NCBI nr
Match: KAG7034878.1 (Zinc finger CCCH domain-containing protein 66, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 415.2 bits (1066), Expect = 3.1e-112
Identity = 201/201 (100.00%), Postives = 201/201 (100.00%), Query Frame = 0


Query: 1   MFNQSNVSPVLPNLGYNSVNLEDSHSNGQLALSTSTLTLPDRPDQPECRYFMNNGTCKYG 60
           MFNQSNVSPVLPNLGYNSVNLEDSHSNGQLALSTSTLTLPDRPDQPECRYFMNNGTCKYG
Sbjct: 1   MFNQSNVSPVLPNLGYNSVNLEDSHSNGQLALSTSTLTLPDRPDQPECRYFMNNGTCKYG 60

Query: 61  SDCKFHHPKQRIAQSATNVLGLPSRPGQAVCSYYSMYGLCKYGPSCKFDHPSATYPYNYG 120
           SDCKFHHPKQRIAQSATNVLGLPSRPGQAVCSYYSMYGLCKYGPSCKFDHPSATYPYNYG
Sbjct: 61  SDCKFHHPKQRIAQSATNVLGLPSRPGQAVCSYYSMYGLCKYGPSCKFDHPSATYPYNYG 120

Query: 121 FTLPVLNSSFMKYPSNNYTLSSHDTLPQTISKSSEWVQKADPPNNKQQTTDTKVDDGTAE 180
           FTLPVLNSSFMKYPSNNYTLSSHDTLPQTISKSSEWVQKADPPNNKQQTTDTKVDDGTAE
Sbjct: 121 FTLPVLNSSFMKYPSNNYTLSSHDTLPQTISKSSEWVQKADPPNNKQQTTDTKVDDGTAE 180

Query: 181 EVSSVSCSLSGGSESLQDQSG 202
           EVSSVSCSLSGGSESLQDQSG
Sbjct: 181 EVSSVSCSLSGGSESLQDQSG 201

[Close]

BLAST of Carg13622 vs. NCBI nr
Match: XP_022947607.1 (zinc finger CCCH domain-containing protein 3-like [Cucurbita moschata] >XP_023533439.1 zinc finger CCCH domain-containing protein 3-like [Cucurbita pepo subsp. pepo] >KAG6604750.1 Zinc finger CCCH domain-containing protein 3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 406.8 bits (1044), Expect = 1.1e-109
Identity = 197/197 (100.00%), Postives = 197/197 (100.00%), Query Frame = 0


Query: 5   SNVSPVLPNLGYNSVNLEDSHSNGQLALSTSTLTLPDRPDQPECRYFMNNGTCKYGSDCK 64
           SNVSPVLPNLGYNSVNLEDSHSNGQLALSTSTLTLPDRPDQPECRYFMNNGTCKYGSDCK
Sbjct: 239 SNVSPVLPNLGYNSVNLEDSHSNGQLALSTSTLTLPDRPDQPECRYFMNNGTCKYGSDCK 298

Query: 65  FHHPKQRIAQSATNVLGLPSRPGQAVCSYYSMYGLCKYGPSCKFDHPSATYPYNYGFTLP 124
           FHHPKQRIAQSATNVLGLPSRPGQAVCSYYSMYGLCKYGPSCKFDHPSATYPYNYGFTLP
Sbjct: 299 FHHPKQRIAQSATNVLGLPSRPGQAVCSYYSMYGLCKYGPSCKFDHPSATYPYNYGFTLP 358

Query: 125 VLNSSFMKYPSNNYTLSSHDTLPQTISKSSEWVQKADPPNNKQQTTDTKVDDGTAEEVSS 184
           VLNSSFMKYPSNNYTLSSHDTLPQTISKSSEWVQKADPPNNKQQTTDTKVDDGTAEEVSS
Sbjct: 359 VLNSSFMKYPSNNYTLSSHDTLPQTISKSSEWVQKADPPNNKQQTTDTKVDDGTAEEVSS 418

Query: 185 VSCSLSGGSESLQDQSG 202
           VSCSLSGGSESLQDQSG
Sbjct: 419 VSCSLSGGSESLQDQSG 435

[Close]

BLAST of Carg13622 vs. NCBI nr
Match: XP_022970766.1 (zinc finger CCCH domain-containing protein 3-like [Cucurbita maxima])

HSP 1 Score: 399.4 bits (1025), Expect = 1.8e-107
Identity = 192/197 (97.46%), Postives = 195/197 (98.98%), Query Frame = 0


Query: 5   SNVSPVLPNLGYNSVNLEDSHSNGQLALSTSTLTLPDRPDQPECRYFMNNGTCKYGSDCK 64
           SNVSPVLPNLGYNSVNLEDSHSNGQLALSTSTLTLPDRPDQPECRYFMNNGTCKYGSDCK
Sbjct: 239 SNVSPVLPNLGYNSVNLEDSHSNGQLALSTSTLTLPDRPDQPECRYFMNNGTCKYGSDCK 298

Query: 65  FHHPKQRIAQSATNVLGLPSRPGQAVCSYYSMYGLCKYGPSCKFDHPSATYPYNYGFTLP 124
           FHHPKQRIAQS  NVLGLPSRPGQAVCSYYSMYGLCKYGPSCKFDHPSATYPYNYGFTLP
Sbjct: 299 FHHPKQRIAQSVMNVLGLPSRPGQAVCSYYSMYGLCKYGPSCKFDHPSATYPYNYGFTLP 358

Query: 125 VLNSSFMKYPSNNYTLSSHDTLPQTISKSSEWVQKADPPNNKQQTTDTKVDDGTAEEVSS 184
           VLNSSFMKYPSNNYTLSSHDTLPQT+SKSSEWVQKADPPN+KQQTTDTKVDDGTAEEVSS
Sbjct: 359 VLNSSFMKYPSNNYTLSSHDTLPQTVSKSSEWVQKADPPNDKQQTTDTKVDDGTAEEVSS 418

Query: 185 VSCSLSGGSESLQDQSG 202
           VSCSLSGGSE+LQDQSG
Sbjct: 419 VSCSLSGGSETLQDQSG 435

[Close]

BLAST of Carg13622 vs. NCBI nr
Match: XP_038901479.1 (zinc finger CCCH domain-containing protein 3-like [Benincasa hispida])

HSP 1 Score: 369.0 bits (946), Expect = 2.6e-98
Identity = 176/197 (89.34%), Postives = 191/197 (96.95%), Query Frame = 0


Query: 6   NVSPVLPNLGYNSVNLEDSHSNGQLALSTSTLTLPDRPDQPECRYFMNNGTCKYGSDCKF 65
           NVSP+LPNLGYNSVNLE+S+SNGQLALSTST TLPDRPDQPECRYFMNNGTCKYGSDCKF
Sbjct: 240 NVSPILPNLGYNSVNLEESYSNGQLALSTSTPTLPDRPDQPECRYFMNNGTCKYGSDCKF 299

Query: 66  HHPKQRIAQSATNVLGLPSRPGQAVCSYYSMYGLCKYGPSCKFDHPSATYPYNYGFTLPV 125
           HHPKQRIAQSATN LGLPSRPGQA+CSYY+MYGLCKYGPSCKFDHPSATYPYNYGFTLPV
Sbjct: 300 HHPKQRIAQSATNALGLPSRPGQAICSYYNMYGLCKYGPSCKFDHPSATYPYNYGFTLPV 359

Query: 126 LNSSFMKYPSNNYTLSSHDTLPQTISKSSEWVQKADPPNNKQQTTDTK-VDDGTAEEVSS 185
           L+SSFMKYPSNN+T+SSH+TLPQT+SKSSEWVQKADP NNK++TTD+K V DGTAEEV+S
Sbjct: 360 LDSSFMKYPSNNFTMSSHETLPQTLSKSSEWVQKADPSNNKRRTTDSKIVADGTAEEVTS 419

Query: 186 VSCSLSGGSESLQDQSG 202
           VSCSL GGSE+LQDQSG
Sbjct: 420 VSCSLPGGSETLQDQSG 436

[Close]

BLAST of Carg13622 vs. NCBI nr
Match: KAG6570550.1 (Zinc finger CCCH domain-containing protein 3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 354.4 bits (908), Expect = 6.6e-94
Identity = 169/197 (85.79%), Postives = 186/197 (94.42%), Query Frame = 0


Query: 6   NVSPVLPNLGYNSVNLEDSHSNGQLALSTSTLTLPDRPDQPECRYFMNNGTCKYGSDCKF 65
           NVSPVLPNLGYNS+NLE+ +SNGQLA ST+T TLPDRPDQPECRYFMNNGTCKYGSDCKF
Sbjct: 240 NVSPVLPNLGYNSINLEEPYSNGQLASSTATPTLPDRPDQPECRYFMNNGTCKYGSDCKF 299

Query: 66  HHPKQRIAQSATNVLGLPSRPGQAVCSYYSMYGLCKYGPSCKFDHPSATYPYNYGFTLPV 125
           HHPKQRIAQSATN LGLPSRPGQAVCSYY+MYGLCKYGPSCKFDHPSATYPYNYGFTLPV
Sbjct: 300 HHPKQRIAQSATNPLGLPSRPGQAVCSYYNMYGLCKYGPSCKFDHPSATYPYNYGFTLPV 359

Query: 126 LNSSFMKYPSNNYTLSSHDTLPQTISKSSEWVQKADPPNNKQQTTDTK-VDDGTAEEVSS 185
           L+SSFMKYPSNN+T+SSH+ LPQT+SKSSEWVQKADP NNK++TT++K V D TAEE ++
Sbjct: 360 LDSSFMKYPSNNFTMSSHEALPQTVSKSSEWVQKADPSNNKRRTTNSKVVVDSTAEEATT 419

Query: 186 VSCSLSGGSESLQDQSG 202
           VSCSL GGSE+LQDQSG
Sbjct: 420 VSCSLPGGSETLQDQSG 436

[Close]

BLAST of Carg13622 vs. ExPASy Swiss-Prot
Match: Q2R4J4 (Zinc finger CCCH domain-containing protein 63 OS=Oryza sativa subsp. japonica OX=39947 GN=Os11g0472000 PE=2 SV=2)

HSP 1 Score: 120.9 bits (302), Expect = 1.6e-26
Identity = 54/113 (47.79%), Postives = 75/113 (66.37%), Query Frame = 0


Query: 12  PNLGYNSVNLEDSHSNGQLALSTSTL----TLPDRPDQPECRYFMNNGTCKYGSDCKFHH 71
           PN+G     +  S+  G + L   T+      P+RPDQPEC+++M  G CK+G+ CKFHH
Sbjct: 277 PNMG--DQGMFSSYQAGSVPLGLYTVQRESIFPERPDQPECQFYMKTGDCKFGAVCKFHH 336

Query: 72  PKQRIAQS---ATNVLGLPSRPGQAVCSYYSMYGLCKYGPSCKFDHPSATYPY 118
           PK+RI  +   A + LGLP RPG+ +C++YS YG+CK+GP+CKFDHP  T  Y
Sbjct: 337 PKERIIPTPNCALSSLGLPLRPGEPICTFYSRYGICKFGPNCKFDHPMGTVMY 387

[Close]

BLAST of Carg13622 vs. ExPASy Swiss-Prot
Match: Q2QT65 (Zinc finger CCCH domain-containing protein 66 OS=Oryza sativa subsp. japonica OX=39947 GN=Os12g0405100 PE=2 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.4e-25
Identity = 68/177 (38.42%), Postives = 94/177 (53.11%), Query Frame = 0


Query: 15  GYNSVNLEDSHSNGQLALSTSTL----TLPDRPDQPECRYFMNNGTCKYGSDCKFHHPKQ 74
           G     +  S+  G + +   T+      P+RPDQPEC+++M  G CK+G+ CKFHHPK+
Sbjct: 287 GMGDHGMYQSYQGGSVPVGVYTVQGENIFPERPDQPECQFYMKTGDCKFGAVCKFHHPKE 346

Query: 75  RIAQS---ATNVLGLPSRPGQAVCSYYSMYGLCKYGPSCKFDHPSATYPYNYGFTLPVLN 134
           R+  +   A N LGLP RPG+ VC++YS YG+CK+GP+CKFDHP  T  Y    T P  +
Sbjct: 347 RLVPAPNCALNSLGLPLRPGEPVCTFYSRYGICKFGPNCKFDHPMGTLMYG-SATSPRGD 406

Query: 135 SSFMKYPSNNYTLSSHDTLPQTISKSSEWVQKADPPNNKQQTTDTKVDDGTAEEVSS 185
            S M     +Y LS     P  +           P ++ QQ       DG AE  +S
Sbjct: 407 VSSM-----HYQLSPSPGHPGILLDGGSGRSHRVPQSDSQQIPS---GDGNAEREAS 454

[Close]

BLAST of Carg13622 vs. ExPASy Swiss-Prot
Match: Q9SWF9 (Zinc finger CCCH domain-containing protein ZFN-like OS=Pisum sativum OX=3888 PE=2 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 2.0e-24
Identity = 45/82 (54.88%), Postives = 61/82 (74.39%), Query Frame = 0


Query: 40  PDRPDQPECRYFMNNGTCKYGSDCKFHHPKQRIAQSATNVL---GLPSRPGQAVCSYYSM 99
           P+RPDQPEC+++M  G CK+G+ C+FHHP++R   +   VL   GLP RPG+ +C +YS 
Sbjct: 276 PERPDQPECQFYMKTGDCKFGAVCRFHHPRERQIPAPDCVLSPIGLPLRPGEPLCVFYSR 335

Query: 100 YGLCKYGPSCKFDHPSATYPYN 119
           YG+CK+GPSCKFDHP   + YN
Sbjct: 336 YGICKFGPSCKFDHPMGIFTYN 357

[Close]

BLAST of Carg13622 vs. ExPASy Swiss-Prot
Match: Q8L7N8 (Zinc finger CCCH domain-containing protein 57 OS=Arabidopsis thaliana OX=3702 GN=ZFN3 PE=2 SV=2)

HSP 1 Score: 113.6 bits (283), Expect = 2.6e-24
Identity = 52/112 (46.43%), Postives = 67/112 (59.82%), Query Frame = 0


Query: 25  HSNGQLALSTSTL----TLPDRPDQPECRYFMNNGTCKYGSDCKFHHPKQRIAQSATNVL 84
           HS   + L    L      P+RP QPEC+++M  G CK+G+ CKFHHP+ R       VL
Sbjct: 222 HSGNSVPLGFYALPRENVFPERPGQPECQFYMKTGDCKFGTVCKFHHPRDRQTPPPDCVL 281

Query: 85  ---GLPSRPGQAVCSYYSMYGLCKYGPSCKFDHPSATYPYNYGFTLPVLNSS 130
              GLP RPG+ +C +YS YG+CK+GPSCKFDHP   + YN     P  +SS
Sbjct: 282 SSVGLPLRPGEPLCVFYSRYGICKFGPSCKFDHPMRVFTYNNNTASPSPSSS 333

[Close]

BLAST of Carg13622 vs. ExPASy Swiss-Prot
Match: Q94AD9 (Zinc finger CCCH domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=At1g04990 PE=2 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 4.4e-24
Identity = 64/170 (37.65%), Postives = 96/170 (56.47%), Query Frame = 0


Query: 24  SHSNGQLALSTS-TLTLPDRPDQPECRYFMNNGTCKYGSDCKFHHPKQRIAQ---SATNV 83
           S S+  +A++ +    L +  DQPECR+FMN GTCKYG DCK+ HP  RI+Q   S  N 
Sbjct: 242 SGSSASMAMAVALNRGLSESSDQPECRFFMNTGTCKYGDDCKYSHPGVRISQPPPSLINP 301

Query: 84  LGLPSRPGQAVCSYYSMYGLCKYGPSCKFDHPSATYPYNYGFTLPVLNSSFMKYPSNNYT 143
             LP+RPGQ  C  +  YG CK+GP+CKFDHP   YP   G T+     +    P     
Sbjct: 302 FVLPARPGQPACGNFRSYGFCKFGPNCKFDHPMLPYP---GLTMATSLPTPFASP----- 361

Query: 144 LSSHDTLPQTISKSSEWVQKADPPNNKQQTTDT-KVDDGTAEEVSSVSCS 189
           +++H  +  T ++S         P+ K+++++T K D+G  +++S  + S
Sbjct: 362 VTTHQRISPTPNRSDSKSLSNGKPDVKKESSETEKPDNGEVQDLSEDASS 403

[Close]

BLAST of Carg13622 vs. ExPASy TrEMBL
Match: A0A6J1G6X5 (zinc finger CCCH domain-containing protein 3-like OS=Cucurbita moschata OX=3662 GN=LOC111451423 PE=4 SV=1)

HSP 1 Score: 406.8 bits (1044), Expect = 5.4e-110
Identity = 197/197 (100.00%), Postives = 197/197 (100.00%), Query Frame = 0


Query: 5   SNVSPVLPNLGYNSVNLEDSHSNGQLALSTSTLTLPDRPDQPECRYFMNNGTCKYGSDCK 64
           SNVSPVLPNLGYNSVNLEDSHSNGQLALSTSTLTLPDRPDQPECRYFMNNGTCKYGSDCK
Sbjct: 239 SNVSPVLPNLGYNSVNLEDSHSNGQLALSTSTLTLPDRPDQPECRYFMNNGTCKYGSDCK 298

Query: 65  FHHPKQRIAQSATNVLGLPSRPGQAVCSYYSMYGLCKYGPSCKFDHPSATYPYNYGFTLP 124
           FHHPKQRIAQSATNVLGLPSRPGQAVCSYYSMYGLCKYGPSCKFDHPSATYPYNYGFTLP
Sbjct: 299 FHHPKQRIAQSATNVLGLPSRPGQAVCSYYSMYGLCKYGPSCKFDHPSATYPYNYGFTLP 358

Query: 125 VLNSSFMKYPSNNYTLSSHDTLPQTISKSSEWVQKADPPNNKQQTTDTKVDDGTAEEVSS 184
           VLNSSFMKYPSNNYTLSSHDTLPQTISKSSEWVQKADPPNNKQQTTDTKVDDGTAEEVSS
Sbjct: 359 VLNSSFMKYPSNNYTLSSHDTLPQTISKSSEWVQKADPPNNKQQTTDTKVDDGTAEEVSS 418

Query: 185 VSCSLSGGSESLQDQSG 202
           VSCSLSGGSESLQDQSG
Sbjct: 419 VSCSLSGGSESLQDQSG 435

[Close]

BLAST of Carg13622 vs. ExPASy TrEMBL
Match: A0A6J1I1H3 (zinc finger CCCH domain-containing protein 3-like OS=Cucurbita maxima OX=3661 GN=LOC111469657 PE=4 SV=1)

HSP 1 Score: 399.4 bits (1025), Expect = 8.7e-108
Identity = 192/197 (97.46%), Postives = 195/197 (98.98%), Query Frame = 0


Query: 5   SNVSPVLPNLGYNSVNLEDSHSNGQLALSTSTLTLPDRPDQPECRYFMNNGTCKYGSDCK 64
           SNVSPVLPNLGYNSVNLEDSHSNGQLALSTSTLTLPDRPDQPECRYFMNNGTCKYGSDCK
Sbjct: 239 SNVSPVLPNLGYNSVNLEDSHSNGQLALSTSTLTLPDRPDQPECRYFMNNGTCKYGSDCK 298

Query: 65  FHHPKQRIAQSATNVLGLPSRPGQAVCSYYSMYGLCKYGPSCKFDHPSATYPYNYGFTLP 124
           FHHPKQRIAQS  NVLGLPSRPGQAVCSYYSMYGLCKYGPSCKFDHPSATYPYNYGFTLP
Sbjct: 299 FHHPKQRIAQSVMNVLGLPSRPGQAVCSYYSMYGLCKYGPSCKFDHPSATYPYNYGFTLP 358

Query: 125 VLNSSFMKYPSNNYTLSSHDTLPQTISKSSEWVQKADPPNNKQQTTDTKVDDGTAEEVSS 184
           VLNSSFMKYPSNNYTLSSHDTLPQT+SKSSEWVQKADPPN+KQQTTDTKVDDGTAEEVSS
Sbjct: 359 VLNSSFMKYPSNNYTLSSHDTLPQTVSKSSEWVQKADPPNDKQQTTDTKVDDGTAEEVSS 418

Query: 185 VSCSLSGGSESLQDQSG 202
           VSCSLSGGSE+LQDQSG
Sbjct: 419 VSCSLSGGSETLQDQSG 435

[Close]

BLAST of Carg13622 vs. ExPASy TrEMBL
Match: A0A0A0KF53 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G166210 PE=4 SV=1)

HSP 1 Score: 352.4 bits (903), Expect = 1.2e-93
Identity = 166/196 (84.69%), Postives = 184/196 (93.88%), Query Frame = 0


Query: 5   SNVSPVLPNLGYNSVNLEDSHSNGQLALSTSTLTLPDRPDQPECRYFMNNGTCKYGSDCK 64
           SNV+P+LPNLGYN++NLEDS+SNGQLALSTST TLPDRPDQPECRYFMNNGTCKYGSDCK
Sbjct: 235 SNVNPILPNLGYNNINLEDSYSNGQLALSTSTPTLPDRPDQPECRYFMNNGTCKYGSDCK 294

Query: 65  FHHPKQRIAQSATNVLGLPSRPGQAVCSYYSMYGLCKYGPSCKFDHPSATYPYNYGFTLP 124
           FHHPKQRIAQSATN LGLPSRPGQA+CSYY+MYGLCKYGPSCKFDHPS TYPYNYGFTLP
Sbjct: 295 FHHPKQRIAQSATNALGLPSRPGQAICSYYNMYGLCKYGPSCKFDHPSPTYPYNYGFTLP 354

Query: 125 VLNSSFMKYPSNNYTLSSHDTLPQTISKSSEWVQKADPPNNKQQTTDTKV-DDGTAEEVS 184
           +L+SS +KYPSNN+T+SSH+TLP T+SKSSEWVQKADP NNK++TTD+KV  D T EE +
Sbjct: 355 LLDSSIIKYPSNNFTMSSHETLPGTVSKSSEWVQKADPSNNKRRTTDSKVIIDSTGEEAT 414

Query: 185 SVSCSLSGGSESLQDQ 200
           SVSCSL GGSESLQDQ
Sbjct: 415 SVSCSLPGGSESLQDQ 430

[Close]

BLAST of Carg13622 vs. ExPASy TrEMBL
Match: A0A6J1FY55 (zinc finger CCCH domain-containing protein ZFN-like OS=Cucurbita moschata OX=3662 GN=LOC111448361 PE=4 SV=1)

HSP 1 Score: 351.7 bits (901), Expect = 2.1e-93
Identity = 168/197 (85.28%), Postives = 185/197 (93.91%), Query Frame = 0


Query: 6   NVSPVLPNLGYNSVNLEDSHSNGQLALSTSTLTLPDRPDQPECRYFMNNGTCKYGSDCKF 65
           NVSPVLPNLGYNS+NLE+ +SNGQLA ST+T TLPDRPDQPECRYFMNNGTCKYGSDCKF
Sbjct: 240 NVSPVLPNLGYNSINLEEPYSNGQLASSTATPTLPDRPDQPECRYFMNNGTCKYGSDCKF 299

Query: 66  HHPKQRIAQSATNVLGLPSRPGQAVCSYYSMYGLCKYGPSCKFDHPSATYPYNYGFTLPV 125
           HHPKQRIAQSATN LGLPSRPGQAVCSYY+MYGLCKYGPSCKFDHPSATYPYNYGFTLPV
Sbjct: 300 HHPKQRIAQSATNPLGLPSRPGQAVCSYYNMYGLCKYGPSCKFDHPSATYPYNYGFTLPV 359

Query: 126 LNSSFMKYPSNNYTLSSHDTLPQTISKSSEWVQKADPPNNKQQTTDT-KVDDGTAEEVSS 185
           L+SSFMKYPSNN+T+SSH+ LPQT+SKSSEWVQKADP NNK++TT++  V D TAEE ++
Sbjct: 360 LDSSFMKYPSNNFTMSSHEALPQTVSKSSEWVQKADPSNNKRRTTNSIVVVDSTAEEATT 419

Query: 186 VSCSLSGGSESLQDQSG 202
           VSCSL GGSE+LQDQSG
Sbjct: 420 VSCSLPGGSETLQDQSG 436

[Close]

BLAST of Carg13622 vs. ExPASy TrEMBL
Match: A0A6J1J6B5 (zinc finger CCCH domain-containing protein ZFN-like OS=Cucurbita maxima OX=3661 GN=LOC111483850 PE=4 SV=1)

HSP 1 Score: 350.5 bits (898), Expect = 4.6e-93
Identity = 167/197 (84.77%), Postives = 184/197 (93.40%), Query Frame = 0


Query: 6   NVSPVLPNLGYNSVNLEDSHSNGQLALSTSTLTLPDRPDQPECRYFMNNGTCKYGSDCKF 65
           NVSPVLPNLGYNS+N E+ +SNGQLA ST+  TLPDRPDQPECRYFMNNGTCKYGSDCKF
Sbjct: 240 NVSPVLPNLGYNSINFEEPYSNGQLASSTAIPTLPDRPDQPECRYFMNNGTCKYGSDCKF 299

Query: 66  HHPKQRIAQSATNVLGLPSRPGQAVCSYYSMYGLCKYGPSCKFDHPSATYPYNYGFTLPV 125
           HHPKQRIAQSATN LGLPSRPGQAVCSYY+MYGLCKYGPSCKFDHPSATYPYNYGFTLPV
Sbjct: 300 HHPKQRIAQSATNPLGLPSRPGQAVCSYYNMYGLCKYGPSCKFDHPSATYPYNYGFTLPV 359

Query: 126 LNSSFMKYPSNNYTLSSHDTLPQTISKSSEWVQKADPPNNKQQTTDTK-VDDGTAEEVSS 185
           L+SSFMKYPSNN+T+SSH+ LPQT+SKSSEWVQKADP NNK++TT++K V D TAEE ++
Sbjct: 360 LDSSFMKYPSNNFTMSSHEALPQTVSKSSEWVQKADPSNNKRRTTNSKVVVDSTAEEATT 419

Query: 186 VSCSLSGGSESLQDQSG 202
           VSCSL GGSE+LQDQSG
Sbjct: 420 VSCSLPGGSETLQDQSG 436

[Close]

BLAST of Carg13622 vs. TAIR 10
Match: AT5G16540.3 (zinc finger nuclease 3 )

HSP 1 Score: 113.6 bits (283), Expect = 1.8e-25
Identity = 52/112 (46.43%), Postives = 67/112 (59.82%), Query Frame = 0


Query: 25  HSNGQLALSTSTL----TLPDRPDQPECRYFMNNGTCKYGSDCKFHHPKQRIAQSATNVL 84
           HS   + L    L      P+RP QPEC+++M  G CK+G+ CKFHHP+ R       VL
Sbjct: 201 HSGNSVPLGFYALPRENVFPERPGQPECQFYMKTGDCKFGTVCKFHHPRDRQTPPPDCVL 260

Query: 85  ---GLPSRPGQAVCSYYSMYGLCKYGPSCKFDHPSATYPYNYGFTLPVLNSS 130
              GLP RPG+ +C +YS YG+CK+GPSCKFDHP   + YN     P  +SS
Sbjct: 261 SSVGLPLRPGEPLCVFYSRYGICKFGPSCKFDHPMRVFTYNNNTASPSPSSS 312

[Close]

BLAST of Carg13622 vs. TAIR 10
Match: AT5G16540.1 (zinc finger nuclease 3 )

HSP 1 Score: 113.6 bits (283), Expect = 1.8e-25
Identity = 52/112 (46.43%), Postives = 67/112 (59.82%), Query Frame = 0


Query: 25  HSNGQLALSTSTL----TLPDRPDQPECRYFMNNGTCKYGSDCKFHHPKQRIAQSATNVL 84
           HS   + L    L      P+RP QPEC+++M  G CK+G+ CKFHHP+ R       VL
Sbjct: 222 HSGNSVPLGFYALPRENVFPERPGQPECQFYMKTGDCKFGTVCKFHHPRDRQTPPPDCVL 281

Query: 85  ---GLPSRPGQAVCSYYSMYGLCKYGPSCKFDHPSATYPYNYGFTLPVLNSS 130
              GLP RPG+ +C +YS YG+CK+GPSCKFDHP   + YN     P  +SS
Sbjct: 282 SSVGLPLRPGEPLCVFYSRYGICKFGPSCKFDHPMRVFTYNNNTASPSPSSS 333

[Close]

BLAST of Carg13622 vs. TAIR 10
Match: AT1G04990.2 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 112.8 bits (281), Expect = 3.1e-25
Identity = 64/170 (37.65%), Postives = 96/170 (56.47%), Query Frame = 0


Query: 24  SHSNGQLALSTS-TLTLPDRPDQPECRYFMNNGTCKYGSDCKFHHPKQRIAQ---SATNV 83
           S S+  +A++ +    L +  DQPECR+FMN GTCKYG DCK+ HP  RI+Q   S  N 
Sbjct: 242 SGSSASMAMAVALNRGLSESSDQPECRFFMNTGTCKYGDDCKYSHPGVRISQPPPSLINP 301

Query: 84  LGLPSRPGQAVCSYYSMYGLCKYGPSCKFDHPSATYPYNYGFTLPVLNSSFMKYPSNNYT 143
             LP+RPGQ  C  +  YG CK+GP+CKFDHP   YP   G T+     +    P     
Sbjct: 302 FVLPARPGQPACGNFRSYGFCKFGPNCKFDHPMLPYP---GLTMATSLPTPFASP----- 361

Query: 144 LSSHDTLPQTISKSSEWVQKADPPNNKQQTTDT-KVDDGTAEEVSSVSCS 189
           +++H  +  T ++S         P+ K+++++T K D+G  +++S  + S
Sbjct: 362 VTTHQRISPTPNRSDSKSLSNGKPDVKKESSETEKPDNGEVQDLSEDASS 403

[Close]

BLAST of Carg13622 vs. TAIR 10
Match: AT1G04990.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 112.8 bits (281), Expect = 3.1e-25
Identity = 64/170 (37.65%), Postives = 96/170 (56.47%), Query Frame = 0


Query: 24  SHSNGQLALSTS-TLTLPDRPDQPECRYFMNNGTCKYGSDCKFHHPKQRIAQ---SATNV 83
           S S+  +A++ +    L +  DQPECR+FMN GTCKYG DCK+ HP  RI+Q   S  N 
Sbjct: 242 SGSSASMAMAVALNRGLSESSDQPECRFFMNTGTCKYGDDCKYSHPGVRISQPPPSLINP 301

Query: 84  LGLPSRPGQAVCSYYSMYGLCKYGPSCKFDHPSATYPYNYGFTLPVLNSSFMKYPSNNYT 143
             LP+RPGQ  C  +  YG CK+GP+CKFDHP   YP   G T+     +    P     
Sbjct: 302 FVLPARPGQPACGNFRSYGFCKFGPNCKFDHPMLPYP---GLTMATSLPTPFASP----- 361

Query: 144 LSSHDTLPQTISKSSEWVQKADPPNNKQQTTDT-KVDDGTAEEVSSVSCS 189
           +++H  +  T ++S         P+ K+++++T K D+G  +++S  + S
Sbjct: 362 VTTHQRISPTPNRSDSKSLSNGKPDVKKESSETEKPDNGEVQDLSEDASS 403

[Close]

BLAST of Carg13622 vs. TAIR 10
Match: AT5G63260.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 109.0 bits (271), Expect = 4.5e-24
Identity = 47/106 (44.34%), Postives = 68/106 (64.15%), Query Frame = 0


Query: 8   SPVLPNLGYNSVNLEDSHSNGQLALSTSTLTLPDRPDQPECRYFMNNGTCKYGSDCKFHH 67
           SP+ P+    + +L ++ S  Q     S    P+RPDQPEC Y++  G CK+   CK+HH
Sbjct: 300 SPLAPSSYQVNNSLAETSSFSQYQHQMSVEEFPERPDQPECTYYLKTGDCKFKYKCKYHH 359

Query: 68  PKQRIAQSAT---NVLGLPSRPGQAVCSYYSMYGLCKYGPSCKFDH 111
           PK R+ + A    N  GLP RP Q++C++YS YG+CK+GP+C+FDH
Sbjct: 360 PKNRLPKQAAFSFNDKGLPLRPDQSMCTHYSRYGICKFGPACRFDH 405

The following BLAST results are available for this feature:

BLAST of Carg13622 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7034878.1	3.1e-112	100.00	Zinc finger CCCH domain-containing protein 66, partial [Cucurbita argyrosperma s...	[more]
XP_022947607.1	1.1e-109	100.00	zinc finger CCCH domain-containing protein 3-like [Cucurbita moschata] >XP_02353...	[more]
XP_022970766.1	1.8e-107	97.46	zinc finger CCCH domain-containing protein 3-like [Cucurbita maxima]	[more]
XP_038901479.1	2.6e-98	89.34	zinc finger CCCH domain-containing protein 3-like [Benincasa hispida]	[more]
KAG6570550.1	6.6e-94	85.79	Zinc finger CCCH domain-containing protein 3, partial [Cucurbita argyrosperma su...	[more]

BLAST of Carg13622 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q2R4J4	1.6e-26	47.79	Zinc finger CCCH domain-containing protein 63 OS=Oryza sativa subsp. japonica OX...	[more]
Q2QT65	1.4e-25	38.42	Zinc finger CCCH domain-containing protein 66 OS=Oryza sativa subsp. japonica OX...	[more]
Q9SWF9	2.0e-24	54.88	Zinc finger CCCH domain-containing protein ZFN-like OS=Pisum sativum OX=3888 PE=...	[more]
Q8L7N8	2.6e-24	46.43	Zinc finger CCCH domain-containing protein 57 OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q94AD9	4.4e-24	37.65	Zinc finger CCCH domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=...	[more]

BLAST of Carg13622 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G6X5	5.4e-110	100.00	zinc finger CCCH domain-containing protein 3-like OS=Cucurbita moschata OX=3662 ...	[more]
A0A6J1I1H3	8.7e-108	97.46	zinc finger CCCH domain-containing protein 3-like OS=Cucurbita maxima OX=3661 GN...	[more]
A0A0A0KF53	1.2e-93	84.69	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G166210 PE=4 SV=1	[more]
A0A6J1FY55	2.1e-93	85.28	zinc finger CCCH domain-containing protein ZFN-like OS=Cucurbita moschata OX=366...	[more]
A0A6J1J6B5	4.6e-93	84.77	zinc finger CCCH domain-containing protein ZFN-like OS=Cucurbita maxima OX=3661 ...	[more]

BLAST of Carg13622 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G16540.3	1.8e-25	46.43	zinc finger nuclease 3	[more]
AT5G16540.1	1.8e-25	46.43	zinc finger nuclease 3	[more]
AT1G04990.2	3.1e-25	37.65	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT1G04990.1	3.1e-25	37.65	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT5G63260.1	4.5e-24	44.34	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000571	Zinc finger, CCCH-type	SMART	SM00356	c3hfinal6	coord: 42..69 e-value: 4.8E-6 score: 36.1 coord: 85..112 e-value: 8.5E-7 score: 38.6
IPR000571	Zinc finger, CCCH-type	PFAM	PF00642	zf-CCCH	coord: 44..69 e-value: 1.6E-10 score: 40.6 coord: 87..111 e-value: 1.4E-8 score: 34.5
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 85..113 score: 14.276691
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 42..70 score: 16.558243
None	No IPR available	GENE3D	4.10.1000.10		coord: 24..79 e-value: 4.3E-8 score: 34.9
None	No IPR available	GENE3D	4.10.1000.10		coord: 82..164 e-value: 1.8E-5 score: 26.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 179..201
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 153..172
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 153..201
None	No IPR available	PANTHER	PTHR12506	PROTEIN PHOSPHATASE RELATED	coord: 33..170
None	No IPR available	PANTHER	PTHR12506:SF50	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 26	coord: 33..170
IPR036855	Zinc finger, CCCH-type superfamily	SUPERFAMILY	90229	CCCH zinc finger	coord: 85..110
IPR036855	Zinc finger, CCCH-type superfamily	SUPERFAMILY	90229	CCCH zinc finger	coord: 45..70

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg13622-RA	Carg13622-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003729	mRNA binding