Carg13602 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg13602
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like
Location	Carg_Chr02: 447977 .. 448540 (+)
RNA-Seq Expression	Carg13602
Synteny	Carg13602

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGAGTGAAAGAGGCAAAGAGTATGGAGAAGGATCGTCGAGCTCGCCACCGACAACAACAACAACCCCGAGTCGCTACGAGTCACAAAAGCGGCGAGATTGGAACACGTTTGGGCAATACTTGAAGAATCAAAGACCACCAGTGGCACTAGCACAGTGCAACTTCAACCATGTGTTGGAGTTCCTAAGATATTTGGATCAATTTGGGAAGACAAAGGTTCATGTCCAAGGTTGTATGTTCTATGGACAGCCAGAGCCACCAGCGCCATGCACCTGCCCACTCAAGCAAGCATGGGGCAGCCTTGATGCGCTGATAGGGCGGTTGAGAGCTGCTTATGAAGAACATGGTGGCTCCCCTGAGACCAACCCTTTTGCAAGTGCTTCAATAAGGGTTTATCTAAGAGAAGTAAGGGAGTGTCAAGCCAAAGCAAGAGGGATTCCTTATAAAAAGAAGAAGAAAAGCAGCAAGGCAAGCAATACCAATACAAATCATGATGATTCAACTACTAATACTTGTTCTTCTTCTTCTTCTTCTGGGATGATGCACTTTTCAACTCCTTAG

mRNA sequence

ATGTCGAGTGAAAGAGGCAAAGAGTATGGAGAAGGATCGTCGAGCTCGCCACCGACAACAACAACAACCCCGAGTCGCTACGAGTCACAAAAGCGGCGAGATTGGAACACGTTTGGGCAATACTTGAAGAATCAAAGACCACCAGTGGCACTAGCACAGTGCAACTTCAACCATGTGTTGGAGTTCCTAAGATATTTGGATCAATTTGGGAAGACAAAGGTTCATGTCCAAGGTTGTATGTTCTATGGACAGCCAGAGCCACCAGCGCCATGCACCTGCCCACTCAAGCAAGCATGGGGCAGCCTTGATGCGCTGATAGGGCGGTTGAGAGCTGCTTATGAAGAACATGGTGGCTCCCCTGAGACCAACCCTTTTGCAAGTGCTTCAATAAGGGTTTATCTAAGAGAAGTAAGGGAGTGTCAAGCCAAAGCAAGAGGGATTCCTTATAAAAAGAAGAAGAAAAGCAGCAAGGCAAGCAATACCAATACAAATCATGATGATTCAACTACTAATACTTGTTCTTCTTCTTCTTCTTCTGGGATGATGCACTTTTCAACTCCTTAG

Coding sequence (CDS)

ATGTCGAGTGAAAGAGGCAAAGAGTATGGAGAAGGATCGTCGAGCTCGCCACCGACAACAACAACAACCCCGAGTCGCTACGAGTCACAAAAGCGGCGAGATTGGAACACGTTTGGGCAATACTTGAAGAATCAAAGACCACCAGTGGCACTAGCACAGTGCAACTTCAACCATGTGTTGGAGTTCCTAAGATATTTGGATCAATTTGGGAAGACAAAGGTTCATGTCCAAGGTTGTATGTTCTATGGACAGCCAGAGCCACCAGCGCCATGCACCTGCCCACTCAAGCAAGCATGGGGCAGCCTTGATGCGCTGATAGGGCGGTTGAGAGCTGCTTATGAAGAACATGGTGGCTCCCCTGAGACCAACCCTTTTGCAAGTGCTTCAATAAGGGTTTATCTAAGAGAAGTAAGGGAGTGTCAAGCCAAAGCAAGAGGGATTCCTTATAAAAAGAAGAAGAAAAGCAGCAAGGCAAGCAATACCAATACAAATCATGATGATTCAACTACTAATACTTGTTCTTCTTCTTCTTCTTCTGGGATGATGCACTTTTCAACTCCTTAG

Protein sequence

MSSERGKEYGEGSSSSPPTTTTTPSRYESQKRRDWNTFGQYLKNQRPPVALAQCNFNHVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLKQAWGSLDALIGRLRAAYEEHGGSPETNPFASASIRVYLREVRECQAKARGIPYKKKKKSSKASNTNTNHDDSTTNTCSSSSSSGMMHFSTP

Homology

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BLAST of Carg13602 vs. NCBI nr
Match: XP_022947237.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita moschata] >XP_022970867.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita maxima] >KAG6604771.1 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10, partial [Cucurbita argyrosperma subsp. sororia] >KAG7034898.1 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 380.2 bits (975), Expect = 1.0e-101
Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 0


Query: 1   MSSERGKEYGEGSSSSPPTTTTTPSRYESQKRRDWNTFGQYLKNQRPPVALAQCNFNHVL 60
           MSSERGKEYGEGSSSSPPTTTTTPSRYESQKRRDWNTFGQYLKNQRPPVALAQCNFNHVL
Sbjct: 1   MSSERGKEYGEGSSSSPPTTTTTPSRYESQKRRDWNTFGQYLKNQRPPVALAQCNFNHVL 60

Query: 61  EFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLKQAWGSLDALIGRLRAAYEEHGGSP 120
           EFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLKQAWGSLDALIGRLRAAYEEHGGSP
Sbjct: 61  EFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLKQAWGSLDALIGRLRAAYEEHGGSP 120

Query: 121 ETNPFASASIRVYLREVRECQAKARGIPYKKKKKSSKASNTNTNHDDSTTNTCSSSSSSG 180
           ETNPFASASIRVYLREVRECQAKARGIPYKKKKKSSKASNTNTNHDDSTTNTCSSSSSSG
Sbjct: 121 ETNPFASASIRVYLREVRECQAKARGIPYKKKKKSSKASNTNTNHDDSTTNTCSSSSSSG 180

Query: 181 MMHFSTP 188
           MMHFSTP
Sbjct: 181 MMHFSTP 187

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BLAST of Carg13602 vs. NCBI nr
Match: XP_023534180.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 379.0 bits (972), Expect = 2.3e-101
Identity = 186/187 (99.47%), Postives = 187/187 (100.00%), Query Frame = 0


Query: 1   MSSERGKEYGEGSSSSPPTTTTTPSRYESQKRRDWNTFGQYLKNQRPPVALAQCNFNHVL 60
           MSSERGKEYGEGSSSSPPTTTTTPSRYESQKRRDWNTFGQYLKNQRPPVALAQCNFNHVL
Sbjct: 1   MSSERGKEYGEGSSSSPPTTTTTPSRYESQKRRDWNTFGQYLKNQRPPVALAQCNFNHVL 60

Query: 61  EFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLKQAWGSLDALIGRLRAAYEEHGGSP 120
           EFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLKQAWGSLDALIGRLRAAYEEHGGSP
Sbjct: 61  EFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLKQAWGSLDALIGRLRAAYEEHGGSP 120

Query: 121 ETNPFASASIRVYLREVRECQAKARGIPYKKKKKSSKASNTNTNHDDSTTNTCSSSSSSG 180
           ETNPFASASIRVYLREVRECQAKARGIPYKKKKKS+KASNTNTNHDDSTTNTCSSSSSSG
Sbjct: 121 ETNPFASASIRVYLREVRECQAKARGIPYKKKKKSNKASNTNTNHDDSTTNTCSSSSSSG 180

Query: 181 MMHFSTP 188
           MMHFSTP
Sbjct: 181 MMHFSTP 187

[Close]

BLAST of Carg13602 vs. NCBI nr
Match: XP_038900865.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Benincasa hispida])

HSP 1 Score: 327.8 bits (839), Expect = 6.1e-86
Identity = 165/182 (90.66%), Postives = 171/182 (93.96%), Query Frame = 0


Query: 7   KEYGEGSSSSPPTTTTTPSRYESQKRRDWNTFGQYLKNQRPPVALAQCNFNHVLEFLRYL 66
           KEYGEGSSSSPPTT TTPSRYESQKRRDWNTFGQYLKNQRPPVAL+QCNFNHVLEFLRYL
Sbjct: 4   KEYGEGSSSSPPTTATTPSRYESQKRRDWNTFGQYLKNQRPPVALSQCNFNHVLEFLRYL 63

Query: 67  DQFGKTKVHVQGCMFYGQPEPPAPCTCPLKQAWGSLDALIGRLRAAYEEHGGSPETNPFA 126
           DQFGKTKVHVQGCMFYGQPEPPAPCTCPLKQAWGSLDALIGRLRAAYEE+GGSPE+NPFA
Sbjct: 64  DQFGKTKVHVQGCMFYGQPEPPAPCTCPLKQAWGSLDALIGRLRAAYEENGGSPESNPFA 123

Query: 127 SASIRVYLREVRECQAKARGIPYKKKKKSSKA-SNTNTNHDDSTTNTCSSSSSSGMMHFS 186
           SASIRVYLREVRECQAKARGIPYKKKKKS+KA +NTN   DDST NT    SSS +MHFS
Sbjct: 124 SASIRVYLREVRECQAKARGIPYKKKKKSNKANNNTNLLVDDSTNNT----SSSSIMHFS 181

Query: 187 TP 188
           TP
Sbjct: 184 TP 181

[Close]

BLAST of Carg13602 vs. NCBI nr
Match: XP_008448236.1 (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucumis melo] >XP_016900524.1 PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucumis melo] >TYK04855.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucumis melo var. makuwa])

HSP 1 Score: 323.6 bits (828), Expect = 1.2e-84
Identity = 165/189 (87.30%), Postives = 173/189 (91.53%), Query Frame = 0


Query: 7   KEYGEGSSSSPPTTTTTPSRYESQKRRDWNTFGQYLKNQRPPVALAQCNFNHVLEFLRYL 66
           KEYGEGSS+SPP T TTPSRYESQKRRDWNTFGQYLKNQRPPVAL+QCNFNHVLEFLRYL
Sbjct: 13  KEYGEGSSNSPP-TATTPSRYESQKRRDWNTFGQYLKNQRPPVALSQCNFNHVLEFLRYL 72

Query: 67  DQFGKTKVHVQGCMFYGQPEPPAPCTCPLKQAWGSLDALIGRLRAAYEEHGGSPETNPFA 126
           DQFGKTKVHVQGCMFYGQPEPPAPCTCPLKQAWGSLDALIGRLRAAYEE+GGSPETNPFA
Sbjct: 73  DQFGKTKVHVQGCMFYGQPEPPAPCTCPLKQAWGSLDALIGRLRAAYEENGGSPETNPFA 132

Query: 127 SASIRVYLREVRECQAKARGIPYKKKKKSSK----ASNTNTNH----DDSTTNTCSSSSS 186
           SASIRVYLREVRECQAKARGIPYKKKKKS+K     +N NTN+    D +TTN  SSSSS
Sbjct: 133 SASIRVYLREVRECQAKARGIPYKKKKKSNKQQQPTNNNNTNNLLIDDSTTTNNISSSSS 192

Query: 187 SGMMHFSTP 188
           S +MHFSTP
Sbjct: 193 SSIMHFSTP 200

[Close]

BLAST of Carg13602 vs. NCBI nr
Match: KAA0062179.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucumis melo var. makuwa])

HSP 1 Score: 323.2 bits (827), Expect = 1.5e-84
Identity = 163/191 (85.34%), Postives = 170/191 (89.01%), Query Frame = 0


Query: 7   KEYGEGSSSSPPTTTTTPSRYESQKRRDWNTFGQYLKNQRPPVALAQCNFNHVLEFLRYL 66
           KEYGEGSS+SPPT  TTPSRYESQKRRDWNTFGQYLKNQRPPVAL+QCNFNHVLEFLRYL
Sbjct: 13  KEYGEGSSNSPPTAATTPSRYESQKRRDWNTFGQYLKNQRPPVALSQCNFNHVLEFLRYL 72

Query: 67  DQFGKTKVHVQGCMFYGQPEPPAPCTCPLKQAWGSLDALIGRLRAAYEEHGGSPETNPFA 126
           DQFGKTKVHVQGCMFYGQPEPPAPCTCPLKQAWGSLDALIGRLRAAYEE+GGSPETNPFA
Sbjct: 73  DQFGKTKVHVQGCMFYGQPEPPAPCTCPLKQAWGSLDALIGRLRAAYEENGGSPETNPFA 132

Query: 127 SASIRVYLREVRECQAKARGIPYKKKKKSSK------ASNTNTNH----DDSTTNTCSSS 186
           SASIRVYLREVRECQAKARGIPYKKKKK          +N NTN+    D +TTN  SSS
Sbjct: 133 SASIRVYLREVRECQAKARGIPYKKKKKKKSNKQQQPTNNNNTNNLLIDDSTTTNNISSS 192

Query: 187 SSSGMMHFSTP 188
           SSS +MHFSTP
Sbjct: 193 SSSSIMHFSTP 203

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BLAST of Carg13602 vs. ExPASy Swiss-Prot
Match: Q9S7R3 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 OS=Arabidopsis thaliana OX=3702 GN=LSH10 PE=1 SV=1)

HSP 1 Score: 268.1 bits (684), Expect = 7.6e-71
Identity = 133/175 (76.00%), Postives = 145/175 (82.86%), Query Frame = 0


Query: 4   ERGKEYGEGSSSSPPTTTTTPSRYESQKRRDWNTFGQYLKNQRPPVALAQCNFNHVLEFL 63
           ERGK   E S S PP    TPSRYESQKRRDWNTFGQYLKNQRPPV ++ C+ NHVL+FL
Sbjct: 6   ERGKSLMESSGSEPP---VTPSRYESQKRRDWNTFGQYLKNQRPPVPMSHCSCNHVLDFL 65

Query: 64  RYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLKQAWGSLDALIGRLRAAYEEHGGSPETN 123
           RYLDQFGKTKVHV GCMFYGQPEPPAPCTCPL+QAWGSLDALIGRLRAAYEE+GG PETN
Sbjct: 66  RYLDQFGKTKVHVPGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGPPETN 125

Query: 124 PFASASIRVYLREVRECQAKARGIPYKKKKKSSKASNTNTNHDDSTTNTCSSSSS 179
           PFAS +IRVYLREVRECQAKARGIPYKKKKK           +DS++++ S S S
Sbjct: 126 PFASGAIRVYLREVRECQAKARGIPYKKKKKKKPTPEMGGGREDSSSSSSSFSFS 177

[Close]

BLAST of Carg13602 vs. ExPASy Swiss-Prot
Match: Q9SN52 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 9 OS=Arabidopsis thaliana OX=3702 GN=LSH9 PE=1 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 3.9e-59
Identity = 107/139 (76.98%), Postives = 121/139 (87.05%), Query Frame = 0


Query: 17  PPTTTTTPSRYESQKRRDWNTFGQYLKNQRPPVALAQCNFNHVLEFLRYLDQFGKTKVHV 76
           PP      SRYESQKRRDWNTF QYLK+Q PP+ ++Q ++ HVL FLRYLDQFGKTKVH 
Sbjct: 28  PPQPQQPLSRYESQKRRDWNTFVQYLKSQNPPLMMSQFDYTHVLSFLRYLDQFGKTKVHH 87

Query: 77  QGCMFYGQPEPPAPCTCPLKQAWGSLDALIGRLRAAYEEH-GGSPETNPFASASIRVYLR 136
           Q C+F+GQP+PP PCTCPLKQAWGSLDALIGRLRAAYEEH GGSP+TNPFA+ SIRV+LR
Sbjct: 88  QACVFFGQPDPPGPCTCPLKQAWGSLDALIGRLRAAYEEHGGGSPDTNPFANGSIRVHLR 147

Query: 137 EVRECQAKARGIPYKKKKK 155
           EVRE QAKARGIPY+KKK+
Sbjct: 148 EVRESQAKARGIPYRKKKR 166

[Close]

BLAST of Carg13602 vs. ExPASy Swiss-Prot
Match: Q6ATW6 (Protein G1-like8 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L8 PE=1 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 9.6e-58
Identity = 100/130 (76.92%), Postives = 116/130 (89.23%), Query Frame = 0


Query: 25  SRYESQKRRDWNTFGQYLKNQRPPVALAQCNFNHVLEFLRYLDQFGKTKVHVQGCMFYGQ 84
           SRYESQKRRDWNTF QYLKN RPP+ LA+C+  HV+EFL+YLDQFGKTKVH  GC +YGQ
Sbjct: 29  SRYESQKRRDWNTFLQYLKNHRPPLTLARCSGAHVIEFLKYLDQFGKTKVHASGCAYYGQ 88

Query: 85  PEPPAPCTCPLKQAWGSLDALIGRLRAAYEEHGGSPETNPFASASIRVYLREVRECQAKA 144
           P PPAPC CPL+QAWGSLDALIGRLRAAYEE G +PE+NPFA+ ++R+YLREVR+ QAKA
Sbjct: 89  PSPPAPCPCPLRQAWGSLDALIGRLRAAYEESGHAPESNPFAARAVRIYLREVRDAQAKA 148

Query: 145 RGIPYKKKKK 155
           RGIPY+KKK+
Sbjct: 149 RGIPYEKKKR 158

[Close]

BLAST of Carg13602 vs. ExPASy Swiss-Prot
Match: Q9ZVA0 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 7 OS=Arabidopsis thaliana OX=3702 GN=LSH7 PE=1 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 1.6e-57
Identity = 119/190 (62.63%), Postives = 138/190 (72.63%), Query Frame = 0


Query: 3   SERGKEYGEGSS-------------SSPPTTTTTPSRYESQKRRDWNTFGQYLKNQRPPV 62
           S +GK   EGSS              SPP      SRYESQKRRDWNTF QYL+NQ+PPV
Sbjct: 5   SNKGKGIAEGSSQPQSQPQPQPHQPQSPPNPPAL-SRYESQKRRDWNTFCQYLRNQQPPV 64

Query: 63  ALAQCNFNHVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLKQAWGSLDALIGRL 122
            ++QC  NH+L+FL+YLDQFGKTKVH+ GC+F+GQ EP   C CPLKQAWGSLDALIGRL
Sbjct: 65  HISQCGSNHILDFLQYLDQFGKTKVHIHGCVFFGQVEPAGQCNCPLKQAWGSLDALIGRL 124

Query: 123 RAAYEEHGGSPETNPFASASIRVYLREVRECQAKARGIPYKKKKKSSKASNTNTNHD--D 178
           RAA+EE+GG PE NPFA   IRV+LREVR+ QAKARG+PYKK+KK  K  N   +HD  D
Sbjct: 125 RAAFEENGGLPERNPFAGGGIRVFLREVRDSQAKARGVPYKKRKKRKK-RNPMKSHDGED 184

[Close]

BLAST of Carg13602 vs. ExPASy Swiss-Prot
Match: A2Y5N0 (Protein G1-like8 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_20303 PE=3 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 2.1e-57
Identity = 99/130 (76.15%), Postives = 116/130 (89.23%), Query Frame = 0


Query: 25  SRYESQKRRDWNTFGQYLKNQRPPVALAQCNFNHVLEFLRYLDQFGKTKVHVQGCMFYGQ 84
           SRYESQKRRDWNTF QYL+N RPP+ LA+C+  HV+EFL+YLDQFGKTKVH  GC +YGQ
Sbjct: 31  SRYESQKRRDWNTFLQYLRNHRPPLTLARCSGAHVIEFLKYLDQFGKTKVHASGCAYYGQ 90

Query: 85  PEPPAPCTCPLKQAWGSLDALIGRLRAAYEEHGGSPETNPFASASIRVYLREVRECQAKA 144
           P PPAPC CPL+QAWGSLDALIGRLRAAYEE G +PE+NPFA+ ++R+YLREVR+ QAKA
Sbjct: 91  PSPPAPCPCPLRQAWGSLDALIGRLRAAYEESGHAPESNPFAARAVRIYLREVRDAQAKA 150

Query: 145 RGIPYKKKKK 155
           RGIPY+KKK+
Sbjct: 151 RGIPYEKKKR 160

[Close]

BLAST of Carg13602 vs. ExPASy TrEMBL
Match: A0A6J1I0C7 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucurbita maxima OX=3661 GN=LOC111469714 PE=3 SV=1)

HSP 1 Score: 380.2 bits (975), Expect = 5.1e-102
Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 0


Query: 1   MSSERGKEYGEGSSSSPPTTTTTPSRYESQKRRDWNTFGQYLKNQRPPVALAQCNFNHVL 60
           MSSERGKEYGEGSSSSPPTTTTTPSRYESQKRRDWNTFGQYLKNQRPPVALAQCNFNHVL
Sbjct: 1   MSSERGKEYGEGSSSSPPTTTTTPSRYESQKRRDWNTFGQYLKNQRPPVALAQCNFNHVL 60

Query: 61  EFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLKQAWGSLDALIGRLRAAYEEHGGSP 120
           EFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLKQAWGSLDALIGRLRAAYEEHGGSP
Sbjct: 61  EFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLKQAWGSLDALIGRLRAAYEEHGGSP 120

Query: 121 ETNPFASASIRVYLREVRECQAKARGIPYKKKKKSSKASNTNTNHDDSTTNTCSSSSSSG 180
           ETNPFASASIRVYLREVRECQAKARGIPYKKKKKSSKASNTNTNHDDSTTNTCSSSSSSG
Sbjct: 121 ETNPFASASIRVYLREVRECQAKARGIPYKKKKKSSKASNTNTNHDDSTTNTCSSSSSSG 180

Query: 181 MMHFSTP 188
           MMHFSTP
Sbjct: 181 MMHFSTP 187

[Close]

BLAST of Carg13602 vs. ExPASy TrEMBL
Match: A0A6J1G5W8 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucurbita moschata OX=3662 GN=LOC111451160 PE=3 SV=1)

HSP 1 Score: 380.2 bits (975), Expect = 5.1e-102
Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 0


Query: 1   MSSERGKEYGEGSSSSPPTTTTTPSRYESQKRRDWNTFGQYLKNQRPPVALAQCNFNHVL 60
           MSSERGKEYGEGSSSSPPTTTTTPSRYESQKRRDWNTFGQYLKNQRPPVALAQCNFNHVL
Sbjct: 1   MSSERGKEYGEGSSSSPPTTTTTPSRYESQKRRDWNTFGQYLKNQRPPVALAQCNFNHVL 60

Query: 61  EFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLKQAWGSLDALIGRLRAAYEEHGGSP 120
           EFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLKQAWGSLDALIGRLRAAYEEHGGSP
Sbjct: 61  EFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLKQAWGSLDALIGRLRAAYEEHGGSP 120

Query: 121 ETNPFASASIRVYLREVRECQAKARGIPYKKKKKSSKASNTNTNHDDSTTNTCSSSSSSG 180
           ETNPFASASIRVYLREVRECQAKARGIPYKKKKKSSKASNTNTNHDDSTTNTCSSSSSSG
Sbjct: 121 ETNPFASASIRVYLREVRECQAKARGIPYKKKKKSSKASNTNTNHDDSTTNTCSSSSSSG 180

Query: 181 MMHFSTP 188
           MMHFSTP
Sbjct: 181 MMHFSTP 187

[Close]

BLAST of Carg13602 vs. ExPASy TrEMBL
Match: A0A1S4DX19 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucumis melo OX=3656 GN=LOC103490491 PE=3 SV=1)

HSP 1 Score: 323.6 bits (828), Expect = 5.6e-85
Identity = 165/189 (87.30%), Postives = 173/189 (91.53%), Query Frame = 0


Query: 7   KEYGEGSSSSPPTTTTTPSRYESQKRRDWNTFGQYLKNQRPPVALAQCNFNHVLEFLRYL 66
           KEYGEGSS+SPP T TTPSRYESQKRRDWNTFGQYLKNQRPPVAL+QCNFNHVLEFLRYL
Sbjct: 13  KEYGEGSSNSPP-TATTPSRYESQKRRDWNTFGQYLKNQRPPVALSQCNFNHVLEFLRYL 72

Query: 67  DQFGKTKVHVQGCMFYGQPEPPAPCTCPLKQAWGSLDALIGRLRAAYEEHGGSPETNPFA 126
           DQFGKTKVHVQGCMFYGQPEPPAPCTCPLKQAWGSLDALIGRLRAAYEE+GGSPETNPFA
Sbjct: 73  DQFGKTKVHVQGCMFYGQPEPPAPCTCPLKQAWGSLDALIGRLRAAYEENGGSPETNPFA 132

Query: 127 SASIRVYLREVRECQAKARGIPYKKKKKSSK----ASNTNTNH----DDSTTNTCSSSSS 186
           SASIRVYLREVRECQAKARGIPYKKKKKS+K     +N NTN+    D +TTN  SSSSS
Sbjct: 133 SASIRVYLREVRECQAKARGIPYKKKKKSNKQQQPTNNNNTNNLLIDDSTTTNNISSSSS 192

Query: 187 SGMMHFSTP 188
           S +MHFSTP
Sbjct: 193 SSIMHFSTP 200

[Close]

BLAST of Carg13602 vs. ExPASy TrEMBL
Match: A0A5D3C0I4 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold143G00410 PE=3 SV=1)

HSP 1 Score: 323.6 bits (828), Expect = 5.6e-85
Identity = 165/189 (87.30%), Postives = 173/189 (91.53%), Query Frame = 0


Query: 7   KEYGEGSSSSPPTTTTTPSRYESQKRRDWNTFGQYLKNQRPPVALAQCNFNHVLEFLRYL 66
           KEYGEGSS+SPP T TTPSRYESQKRRDWNTFGQYLKNQRPPVAL+QCNFNHVLEFLRYL
Sbjct: 13  KEYGEGSSNSPP-TATTPSRYESQKRRDWNTFGQYLKNQRPPVALSQCNFNHVLEFLRYL 72

Query: 67  DQFGKTKVHVQGCMFYGQPEPPAPCTCPLKQAWGSLDALIGRLRAAYEEHGGSPETNPFA 126
           DQFGKTKVHVQGCMFYGQPEPPAPCTCPLKQAWGSLDALIGRLRAAYEE+GGSPETNPFA
Sbjct: 73  DQFGKTKVHVQGCMFYGQPEPPAPCTCPLKQAWGSLDALIGRLRAAYEENGGSPETNPFA 132

Query: 127 SASIRVYLREVRECQAKARGIPYKKKKKSSK----ASNTNTNH----DDSTTNTCSSSSS 186
           SASIRVYLREVRECQAKARGIPYKKKKKS+K     +N NTN+    D +TTN  SSSSS
Sbjct: 133 SASIRVYLREVRECQAKARGIPYKKKKKSNKQQQPTNNNNTNNLLIDDSTTTNNISSSSS 192

Query: 187 SGMMHFSTP 188
           S +MHFSTP
Sbjct: 193 SSIMHFSTP 200

[Close]

BLAST of Carg13602 vs. ExPASy TrEMBL
Match: A0A5A7V919 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G005640 PE=3 SV=1)

HSP 1 Score: 323.2 bits (827), Expect = 7.3e-85
Identity = 163/191 (85.34%), Postives = 170/191 (89.01%), Query Frame = 0


Query: 7   KEYGEGSSSSPPTTTTTPSRYESQKRRDWNTFGQYLKNQRPPVALAQCNFNHVLEFLRYL 66
           KEYGEGSS+SPPT  TTPSRYESQKRRDWNTFGQYLKNQRPPVAL+QCNFNHVLEFLRYL
Sbjct: 13  KEYGEGSSNSPPTAATTPSRYESQKRRDWNTFGQYLKNQRPPVALSQCNFNHVLEFLRYL 72

Query: 67  DQFGKTKVHVQGCMFYGQPEPPAPCTCPLKQAWGSLDALIGRLRAAYEEHGGSPETNPFA 126
           DQFGKTKVHVQGCMFYGQPEPPAPCTCPLKQAWGSLDALIGRLRAAYEE+GGSPETNPFA
Sbjct: 73  DQFGKTKVHVQGCMFYGQPEPPAPCTCPLKQAWGSLDALIGRLRAAYEENGGSPETNPFA 132

Query: 127 SASIRVYLREVRECQAKARGIPYKKKKKSSK------ASNTNTNH----DDSTTNTCSSS 186
           SASIRVYLREVRECQAKARGIPYKKKKK          +N NTN+    D +TTN  SSS
Sbjct: 133 SASIRVYLREVRECQAKARGIPYKKKKKKKSNKQQQPTNNNNTNNLLIDDSTTTNNISSS 192

Query: 187 SSSGMMHFSTP 188
           SSS +MHFSTP
Sbjct: 193 SSSSIMHFSTP 203

[Close]

BLAST of Carg13602 vs. TAIR 10
Match: AT2G42610.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 268.1 bits (684), Expect = 5.4e-72
Identity = 133/175 (76.00%), Postives = 145/175 (82.86%), Query Frame = 0


Query: 4   ERGKEYGEGSSSSPPTTTTTPSRYESQKRRDWNTFGQYLKNQRPPVALAQCNFNHVLEFL 63
           ERGK   E S S PP    TPSRYESQKRRDWNTFGQYLKNQRPPV ++ C+ NHVL+FL
Sbjct: 6   ERGKSLMESSGSEPP---VTPSRYESQKRRDWNTFGQYLKNQRPPVPMSHCSCNHVLDFL 65

Query: 64  RYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLKQAWGSLDALIGRLRAAYEEHGGSPETN 123
           RYLDQFGKTKVHV GCMFYGQPEPPAPCTCPL+QAWGSLDALIGRLRAAYEE+GG PETN
Sbjct: 66  RYLDQFGKTKVHVPGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGPPETN 125

Query: 124 PFASASIRVYLREVRECQAKARGIPYKKKKKSSKASNTNTNHDDSTTNTCSSSSS 179
           PFAS +IRVYLREVRECQAKARGIPYKKKKK           +DS++++ S S S
Sbjct: 126 PFASGAIRVYLREVRECQAKARGIPYKKKKKKKPTPEMGGGREDSSSSSSSFSFS 177

[Close]

BLAST of Carg13602 vs. TAIR 10
Match: AT2G42610.2 (Protein of unknown function (DUF640) )

HSP 1 Score: 268.1 bits (684), Expect = 5.4e-72
Identity = 133/175 (76.00%), Postives = 145/175 (82.86%), Query Frame = 0


Query: 4   ERGKEYGEGSSSSPPTTTTTPSRYESQKRRDWNTFGQYLKNQRPPVALAQCNFNHVLEFL 63
           ERGK   E S S PP    TPSRYESQKRRDWNTFGQYLKNQRPPV ++ C+ NHVL+FL
Sbjct: 6   ERGKSLMESSGSEPP---VTPSRYESQKRRDWNTFGQYLKNQRPPVPMSHCSCNHVLDFL 65

Query: 64  RYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLKQAWGSLDALIGRLRAAYEEHGGSPETN 123
           RYLDQFGKTKVHV GCMFYGQPEPPAPCTCPL+QAWGSLDALIGRLRAAYEE+GG PETN
Sbjct: 66  RYLDQFGKTKVHVPGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGPPETN 125

Query: 124 PFASASIRVYLREVRECQAKARGIPYKKKKKSSKASNTNTNHDDSTTNTCSSSSS 179
           PFAS +IRVYLREVRECQAKARGIPYKKKKK           +DS++++ S S S
Sbjct: 126 PFASGAIRVYLREVRECQAKARGIPYKKKKKKKPTPEMGGGREDSSSSSSSFSFS 177

[Close]

BLAST of Carg13602 vs. TAIR 10
Match: AT4G18610.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 229.2 bits (583), Expect = 2.8e-60
Identity = 107/139 (76.98%), Postives = 121/139 (87.05%), Query Frame = 0


Query: 17  PPTTTTTPSRYESQKRRDWNTFGQYLKNQRPPVALAQCNFNHVLEFLRYLDQFGKTKVHV 76
           PP      SRYESQKRRDWNTF QYLK+Q PP+ ++Q ++ HVL FLRYLDQFGKTKVH 
Sbjct: 28  PPQPQQPLSRYESQKRRDWNTFVQYLKSQNPPLMMSQFDYTHVLSFLRYLDQFGKTKVHH 87

Query: 77  QGCMFYGQPEPPAPCTCPLKQAWGSLDALIGRLRAAYEEH-GGSPETNPFASASIRVYLR 136
           Q C+F+GQP+PP PCTCPLKQAWGSLDALIGRLRAAYEEH GGSP+TNPFA+ SIRV+LR
Sbjct: 88  QACVFFGQPDPPGPCTCPLKQAWGSLDALIGRLRAAYEEHGGGSPDTNPFANGSIRVHLR 147

Query: 137 EVRECQAKARGIPYKKKKK 155
           EVRE QAKARGIPY+KKK+
Sbjct: 148 EVRESQAKARGIPYRKKKR 166

[Close]

BLAST of Carg13602 vs. TAIR 10
Match: AT1G78815.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 223.8 bits (569), Expect = 1.2e-58
Identity = 119/190 (62.63%), Postives = 138/190 (72.63%), Query Frame = 0


Query: 3   SERGKEYGEGSS-------------SSPPTTTTTPSRYESQKRRDWNTFGQYLKNQRPPV 62
           S +GK   EGSS              SPP      SRYESQKRRDWNTF QYL+NQ+PPV
Sbjct: 5   SNKGKGIAEGSSQPQSQPQPQPHQPQSPPNPPAL-SRYESQKRRDWNTFCQYLRNQQPPV 64

Query: 63  ALAQCNFNHVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLKQAWGSLDALIGRL 122
            ++QC  NH+L+FL+YLDQFGKTKVH+ GC+F+GQ EP   C CPLKQAWGSLDALIGRL
Sbjct: 65  HISQCGSNHILDFLQYLDQFGKTKVHIHGCVFFGQVEPAGQCNCPLKQAWGSLDALIGRL 124

Query: 123 RAAYEEHGGSPETNPFASASIRVYLREVRECQAKARGIPYKKKKKSSKASNTNTNHD--D 178
           RAA+EE+GG PE NPFA   IRV+LREVR+ QAKARG+PYKK+KK  K  N   +HD  D
Sbjct: 125 RAAFEENGGLPERNPFAGGGIRVFLREVRDSQAKARGVPYKKRKKRKK-RNPMKSHDGED 184

[Close]

BLAST of Carg13602 vs. TAIR 10
Match: AT3G23290.2 (Protein of unknown function (DUF640) )

HSP 1 Score: 223.0 bits (567), Expect = 2.0e-58
Identity = 103/142 (72.54%), Postives = 122/142 (85.92%), Query Frame = 0


Query: 13  SSSSPPTTTTTPSRYESQKRRDWNTFGQYLKNQRPPVALAQCNFNHVLEFLRYLDQFGKT 72
           SSSS  + T   SRYE+QKRRDWNTFGQYL+N RPP++L++C+  HVLEFLRYLDQFGKT
Sbjct: 35  SSSSGGSGTNQLSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKT 94

Query: 73  KVHVQGCMFYGQPEPPAPCTCPLKQAWGSLDALIGRLRAAYEEHGGSPETNPFASASIRV 132
           KVH   C F+G P PPAPC CPL+QAWGSLDALIGRLRAA+EE+GGSPETNPF + ++R+
Sbjct: 95  KVHTHLCPFFGHPNPPAPCACPLRQAWGSLDALIGRLRAAFEENGGSPETNPFGARAVRL 154

Query: 133 YLREVRECQAKARGIPYKKKKK 155
           YLREVR+ QAKARGI Y+KKK+
Sbjct: 155 YLREVRDSQAKARGISYEKKKR 176

The following BLAST results are available for this feature:

BLAST of Carg13602 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022947237.1	1.0e-101	100.00	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita moschata] >XP_022970...	[more]
XP_023534180.1	2.3e-101	99.47	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita pepo subsp. pepo]	[more]
XP_038900865.1	6.1e-86	90.66	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Benincasa hispida]	[more]
XP_008448236.1	1.2e-84	87.30	PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucumis melo] >XP_0...	[more]
KAA0062179.1	1.5e-84	85.34	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucumis melo var. makuwa]	[more]

BLAST of Carg13602 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9S7R3	7.6e-71	76.00	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 OS=Arabidopsis thaliana OX=3702 GN=L...	[more]
Q9SN52	3.9e-59	76.98	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 9 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]
Q6ATW6	9.6e-58	76.92	Protein G1-like8 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L8 PE=1 SV=1	[more]
Q9ZVA0	1.6e-57	62.63	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 7 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]
A2Y5N0	2.1e-57	76.15	Protein G1-like8 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_20303 PE=3 SV=1	[more]

BLAST of Carg13602 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I0C7	5.1e-102	100.00	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A6J1G5W8	5.1e-102	100.00	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucurbita moschata OX=3662 G...	[more]
A0A1S4DX19	5.6e-85	87.30	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucumis melo OX=3656 GN=LOC1...	[more]
A0A5D3C0I4	5.6e-85	87.30	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucumis melo var. makuwa OX=...	[more]
A0A5A7V919	7.3e-85	85.34	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucumis melo var. makuwa OX=...	[more]

BLAST of Carg13602 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G42610.1	5.4e-72	76.00	Protein of unknown function (DUF640)	[more]
AT2G42610.2	5.4e-72	76.00	Protein of unknown function (DUF640)	[more]
AT4G18610.1	2.8e-60	76.98	Protein of unknown function (DUF640)	[more]
AT1G78815.1	1.2e-58	62.63	Protein of unknown function (DUF640)	[more]
AT3G23290.2	2.0e-58	72.54	Protein of unknown function (DUF640)	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006936	ALOG domain	PFAM	PF04852	DUF640	coord: 21..139 e-value: 7.1E-65 score: 216.9
IPR006936	ALOG domain	PROSITE	PS51697	ALOG	coord: 26..153 score: 79.152626
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..30
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 161..187
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 146..187
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26
None	No IPR available	PANTHER	PTHR31165:SF10	PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 10	coord: 1..169
IPR040222	ALOG family	PANTHER	PTHR31165	PROTEIN G1-LIKE2	coord: 1..169

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg13602-RA	Carg13602-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009299	mRNA transcription
biological_process	GO:0009416	response to light stimulus
cellular_component	GO:0005634	nucleus