Carg13526 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg13526
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionHexosyltransferase
LocationCarg_Chr02: 832815 .. 834158 (+)
RNA-Seq ExpressionCarg13526
SyntenyCarg13526
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTAACGAGGATGTCTCCTTGGGATCCTGGTTTATTGGACTCGATGTCGAACATATCGATGATCGGAGACTCTGTTGTGGCACTCCACCAGGTAATGTTTTCCCACAATTTTTTTTAACGACGTGCGAGAACAACGAACTTGTCCATGGAAGACAACTTTCAGTGAGGTCTAATTTGGTACCCTACTAACCATTTTGCTGAGAATATTGGTTCAGAAGTCAAATCCAGTGTTTGTTGGCCCTCAGCTTCTTTCTATCCTTTCTTTCCCACTTAGAAAGATACTGCATACCATAATCATAATAGAATTTAATAGAATTAGAGCCGCAAATATTGACCAAAAATCAAGGTTACATTAACCAGCTAATAAGAATCTTGTACTGTAAATCTGACATCCTTGGGGAAAACAAATTGCTTCGGGATCGTATTATTGAAAAACCAATTCAAATGGCTGATGAAGTTTGGTATGCAGTTGGCCAATCACTAAGACTGTGCTGATGTAGCATCAAACTCTACCTGCCATCTGTTAATGTGAAGCTATCATCAAACTGTAACCGTTCAAGCCCACCGCTAGCACATATTATATTCTTTAGGCTTTTCTTTCCAGGTTTTCCCTCAAGGTTTTAAAACGCGTTAAATAGGGAGAGGTTTCCATACCTTTATAAAAAATATTACTTTCCCCTCTTCAACCGATGTGTGATCTCACACAAACTTCTTGTGCAGATTGCGAGTGGAAGGCTCAGGCGGGAAACATTTGCGTTGCTTCGTTCGATTGGAGTTGCAGCGGGATTTGCAAGTCTGCGGAGAGGATTAAGGAGGTCCATCGACGGTGTGGAGAAGGCGAGAATGTACTATGGAGTGCCACTTTCTGAAATGCTGCTTGGACCTTCTTCCATACTCGGATCTGTTGTCTGTACTAGAAAGCTTGCTAATCTTGTACGAACCCAGAGACTTAAAATAACAGATCAAGAGAGAGAGAGCGCTGCACGAGCCACCTCCAATTTTTCTGAGGGTTGGCTAAATCAGCAGCTGAAACAGAAGAGTACACAAATTCTTTGTGGCTATGAGGGCCAATCTGTAAGTTAATAATTCCCTATTGTCATGAAGACAGGATAATAAAAACAACCAAACGAGCACGACTTAAAAAGGTAGTCAAGCATCAGTGTCTTCTTCGTTTCGAAAATTTGCTTATTCTAACTAGTATTGAAAGGGGGAGAAGAATTATAAACAGTATCAGTCCAGACTCTTCCACTGTCAATAGATATTATCTATTTTTGTCCGTTATGTATCGTTGTCAGCTTCACAGTTTTGAAACGTGTCTACTCGAAAGAAGTTGATAAGAATG

mRNA sequence

ATGCTAACGAGGATGTCTCCTTGGGATCCTGGTTTATTGGACTCGATGTCGAACATATCGATGATCGGAGACTCTGTTGTGGCACTCCACCAGATTGCGAGTGGAAGGCTCAGGCGGGAAACATTTGCGTTGCTTCGTTCGATTGGAGTTGCAGCGGGATTTGCAAGTCTGCGGAGAGGATTAAGGAGGTCCATCGACGGTGTGGAGAAGGCGAGAATGTACTATGGAGTGCCACTTTCTGAAATGCTGCTTGGACCTTCTTCCATACTCGGATCTGTTGTCTGTACTAGAAAGCTTGCTAATCTTGTACGAACCCAGAGACTTAAAATAACAGATCAAGAGAGAGAGAGCGCTGCACGAGCCACCTCCAATTTTTCTGAGGGTTGGCTAAATCAGCAGCTGAAACAGAAGAGTACACAAATTCTTTGTGGCTATGAGGGCCAATCTGTAAGTTAATAATTCCCTATTGTCATGAAGACAGGATAATAAAAACAACCAAACGAGCACGACTTAAAAAGGTAGTCAAGCATCAGTGTCTTCTTCGTTTCGAAAATTTGCTTATTCTAACTAGTATTGAAAGGGGGAGAAGAATTATAAACAGTATCAGTCCAGACTCTTCCACTGTCAATAGATATTATCTATTTTTGTCCGTTATGTATCGTTGTCAGCTTCACAGTTTTGAAACGTGTCTACTCGAAAGAAGTTGATAAGAATG

Coding sequence (CDS)

ATGCTAACGAGGATGTCTCCTTGGGATCCTGGTTTATTGGACTCGATGTCGAACATATCGATGATCGGAGACTCTGTTGTGGCACTCCACCAGATTGCGAGTGGAAGGCTCAGGCGGGAAACATTTGCGTTGCTTCGTTCGATTGGAGTTGCAGCGGGATTTGCAAGTCTGCGGAGAGGATTAAGGAGGTCCATCGACGGTGTGGAGAAGGCGAGAATGTACTATGGAGTGCCACTTTCTGAAATGCTGCTTGGACCTTCTTCCATACTCGGATCTGTTGTCTGTACTAGAAAGCTTGCTAATCTTGTACGAACCCAGAGACTTAAAATAACAGATCAAGAGAGAGAGAGCGCTGCACGAGCCACCTCCAATTTTTCTGAGGGTTGGCTAAATCAGCAGCTGAAACAGAAGAGTACACAAATTCTTTGTGGCTATGAGGGCCAATCTGTAAGTTAA

Protein sequence

MLTRMSPWDPGLLDSMSNISMIGDSVVALHQIASGRLRRETFALLRSIGVAAGFASLRRGLRRSIDGVEKARMYYGVPLSEMLLGPSSILGSVVCTRKLANLVRTQRLKITDQERESAARATSNFSEGWLNQQLKQKSTQILCGYEGQSVS
Homology
[Close]
BLAST of Carg13526 vs. NCBI nr
Match: KAG7034973.1 (hypothetical protein SDJN02_01766, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 290.4 bits (742), Expect = 8.8e-75
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 0 

Query: 1   MLTRMSPWDPGLLDSMSNISMIGDSVVALHQIASGRLRRETFALLRSIGVAAGFASLRRG 60
           MLTRMSPWDPGLLDSMSNISMIGDSVVALHQIASGRLRRETFALLRSIGVAAGFASLRRG
Sbjct: 1   MLTRMSPWDPGLLDSMSNISMIGDSVVALHQIASGRLRRETFALLRSIGVAAGFASLRRG 60

Query: 61  LRRSIDGVEKARMYYGVPLSEMLLGPSSILGSVVCTRKLANLVRTQRLKITDQERESAAR 120
           LRRSIDGVEKARMYYGVPLSEMLLGPSSILGSVVCTRKLANLVRTQRLKITDQERESAAR
Sbjct: 61  LRRSIDGVEKARMYYGVPLSEMLLGPSSILGSVVCTRKLANLVRTQRLKITDQERESAAR 120

Query: 121 ATSNFSEGWLNQQLKQKSTQILCGYEGQSVS 152
           ATSNFSEGWLNQQLKQKSTQILCGYEGQSVS
Sbjct: 121 ATSNFSEGWLNQQLKQKSTQILCGYEGQSVS 151

[Close]
BLAST of Carg13526 vs. NCBI nr
Match: KAA0059576.1 (putative beta-1,3-galactosyltransferase 2 [Cucumis melo var. makuwa])

HSP 1 Score: 94.4 bits (233), Expect = 9.2e-16
Identity = 48/62 (77.42%), Postives = 56/62 (90.32%), Query Frame = 0 

Query: 31  QIASGRLRRETFALLRSIGVAAGFASLRRGLRRSIDGVEKARMYYGVPLSEMLLGPSSIL 90
           +IASGRLR+ TFALL SIGVA G+ASL +GL++SIDGVEKARMYYGVPLSE+LL  SSIL
Sbjct: 361 KIASGRLRQGTFALLHSIGVAVGYASLLKGLKKSIDGVEKARMYYGVPLSELLLETSSIL 420

Query: 91  GS 93
           G+
Sbjct: 421 GN 422

[Close]
BLAST of Carg13526 vs. NCBI nr
Match: TYK24206.1 (putative beta-1,3-galactosyltransferase 2 [Cucumis melo var. makuwa])

HSP 1 Score: 94.4 bits (233), Expect = 9.2e-16
Identity = 48/62 (77.42%), Postives = 56/62 (90.32%), Query Frame = 0 

Query: 31  QIASGRLRRETFALLRSIGVAAGFASLRRGLRRSIDGVEKARMYYGVPLSEMLLGPSSIL 90
           +IASGRLR+ TFALL SIGVA G+ASL +GL++SIDGVEKARMYYGVPLSE+LL  SSIL
Sbjct: 366 KIASGRLRQGTFALLHSIGVAVGYASLLKGLKKSIDGVEKARMYYGVPLSELLLETSSIL 425

Query: 91  GS 93
           G+
Sbjct: 426 GN 427

[Close]
BLAST of Carg13526 vs. NCBI nr
Match: THU75057.1 (hypothetical protein C4D60_Mb04t39900 [Musa balbisiana])

HSP 1 Score: 70.1 bits (170), Expect = 1.9e-08
Identity = 40/77 (51.95%), Postives = 46/77 (59.74%), Query Frame = 0 

Query: 1   MLTRMSPWDPGLLDSMSNISMIGDSVVALHQIASGRLRRETFALLRSIGVAAGFASLRRG 60
           M TRMS WD G  D MSNI M GDSV  LH  ASG+ ++ T  LL  IG A  FA L +G
Sbjct: 176 MQTRMSHWDHGSSDWMSNILMTGDSVAVLHLTASGKPKQATSVLLHLIGAAVAFAILPKG 235

Query: 61  LRRSIDGVEKARMYYGV 78
           LRR I    KA+   G+
Sbjct: 236 LRRFIGDAGKAKRLSGM 252

[Close]
BLAST of Carg13526 vs. NCBI nr
Match: KAF2284948.1 (hypothetical protein GH714_032960 [Hevea brasiliensis])

HSP 1 Score: 68.2 bits (165), Expect = 7.1e-08
Identity = 42/73 (57.53%), Postives = 47/73 (64.38%), Query Frame = 0 

Query: 13  LDSMSNISMIGDSVVALHQIASGRLRRETFALLRSIGVAAGFASLRRGLRRSIDGVEKAR 72
           LD+ S + MIGD VV  HQIASGR R  T  LL  IG AAG+A L  GL+RSI GV K R
Sbjct: 339 LDAQSTL-MIGDYVVEPHQIASGRRRLATSVLLHLIGPAAGYAGLLIGLKRSIGGVGKVR 398

Query: 73  MYYGVPLSEMLLG 86
             YGV LS+   G
Sbjct: 399 KLYGVQLSKRCHG 410

[Close]
BLAST of Carg13526 vs. ExPASy TrEMBL
Match: A0A5A7UZG6 (Hexosyltransferase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold4837G00040 PE=3 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 4.5e-16
Identity = 48/62 (77.42%), Postives = 56/62 (90.32%), Query Frame = 0 

Query: 31  QIASGRLRRETFALLRSIGVAAGFASLRRGLRRSIDGVEKARMYYGVPLSEMLLGPSSIL 90
           +IASGRLR+ TFALL SIGVA G+ASL +GL++SIDGVEKARMYYGVPLSE+LL  SSIL
Sbjct: 361 KIASGRLRQGTFALLHSIGVAVGYASLLKGLKKSIDGVEKARMYYGVPLSELLLETSSIL 420

Query: 91  GS 93
           G+
Sbjct: 421 GN 422

[Close]
BLAST of Carg13526 vs. ExPASy TrEMBL
Match: A0A5D3DKQ1 (Hexosyltransferase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold27G00060 PE=3 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 4.5e-16
Identity = 48/62 (77.42%), Postives = 56/62 (90.32%), Query Frame = 0 

Query: 31  QIASGRLRRETFALLRSIGVAAGFASLRRGLRRSIDGVEKARMYYGVPLSEMLLGPSSIL 90
           +IASGRLR+ TFALL SIGVA G+ASL +GL++SIDGVEKARMYYGVPLSE+LL  SSIL
Sbjct: 366 KIASGRLRQGTFALLHSIGVAVGYASLLKGLKKSIDGVEKARMYYGVPLSELLLETSSIL 425

Query: 91  GS 93
           G+
Sbjct: 426 GN 427

[Close]
BLAST of Carg13526 vs. ExPASy TrEMBL
Match: A0A4S8KI54 (Hexosyltransferase OS=Musa balbisiana OX=52838 GN=C4D60_Mb04t39900 PE=3 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 9.0e-09
Identity = 40/77 (51.95%), Postives = 46/77 (59.74%), Query Frame = 0 

Query: 1   MLTRMSPWDPGLLDSMSNISMIGDSVVALHQIASGRLRRETFALLRSIGVAAGFASLRRG 60
           M TRMS WD G  D MSNI M GDSV  LH  ASG+ ++ T  LL  IG A  FA L +G
Sbjct: 176 MQTRMSHWDHGSSDWMSNILMTGDSVAVLHLTASGKPKQATSVLLHLIGAAVAFAILPKG 235

Query: 61  LRRSIDGVEKARMYYGV 78
           LRR I    KA+   G+
Sbjct: 236 LRRFIGDAGKAKRLSGM 252

[Close]
BLAST of Carg13526 vs. ExPASy TrEMBL
Match: A0A6A6KAC6 (Hexosyltransferase OS=Hevea brasiliensis OX=3981 GN=GH714_032960 PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 3.4e-08
Identity = 42/73 (57.53%), Postives = 47/73 (64.38%), Query Frame = 0 

Query: 13  LDSMSNISMIGDSVVALHQIASGRLRRETFALLRSIGVAAGFASLRRGLRRSIDGVEKAR 72
           LD+ S + MIGD VV  HQIASGR R  T  LL  IG AAG+A L  GL+RSI GV K R
Sbjct: 339 LDAQSTL-MIGDYVVEPHQIASGRRRLATSVLLHLIGPAAGYAGLLIGLKRSIGGVGKVR 398

Query: 73  MYYGVPLSEMLLG 86
             YGV LS+   G
Sbjct: 399 KLYGVQLSKRCHG 410

[Close]
BLAST of Carg13526 vs. ExPASy TrEMBL
Match: A0A5D2L071 (Hexosyltransferase OS=Gossypium tomentosum OX=34277 GN=ES332_D05G188800v1 PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 5.9e-08
Identity = 39/76 (51.32%), Postives = 48/76 (63.16%), Query Frame = 0 

Query: 1   MLTRMSPWDPGLLDSMSNISMIGDSVVALHQIASGRLRRETFALLRSIGVAAGFASLRRG 60
           ML +M  W+ GLL  M ++ MIGDS V LHQI +G+L+     LL   G A GFA L RG
Sbjct: 248 MLMKMFLWELGLLVWMWSMWMIGDSAVVLHQIVNGKLKLVISVLLHLTGGAVGFAGLWRG 307

Query: 61  LRRSIDGVEKARMYYG 77
           L RS++ V K RM YG
Sbjct: 308 LWRSMNVVVKTRMLYG 323

The following BLAST results are available for this feature:
BLAST of Carg13526 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7034973.18.8e-75100.00hypothetical protein SDJN02_01766, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAA0059576.19.2e-1677.42putative beta-1,3-galactosyltransferase 2 [Cucumis melo var. makuwa][more]
TYK24206.19.2e-1677.42putative beta-1,3-galactosyltransferase 2 [Cucumis melo var. makuwa][more]
THU75057.11.9e-0851.95hypothetical protein C4D60_Mb04t39900 [Musa balbisiana][more]
KAF2284948.17.1e-0857.53hypothetical protein GH714_032960 [Hevea brasiliensis][more]
BLAST of Carg13526 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg13526 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7UZG64.5e-1677.42Hexosyltransferase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold4837G... [more]
A0A5D3DKQ14.5e-1677.42Hexosyltransferase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold27G00... [more]
A0A4S8KI549.0e-0951.95Hexosyltransferase OS=Musa balbisiana OX=52838 GN=C4D60_Mb04t39900 PE=3 SV=1[more]
A0A6A6KAC63.4e-0857.53Hexosyltransferase OS=Hevea brasiliensis OX=3981 GN=GH714_032960 PE=3 SV=1[more]
A0A5D2L0715.9e-0851.32Hexosyltransferase OS=Gossypium tomentosum OX=34277 GN=ES332_D05G188800v1 PE=3 S... [more]
BLAST of Carg13526 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg13526-RACarg13526-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006486 protein glycosylation
cellular_component GO:0000139 Golgi membrane
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0016758 hexosyltransferase activity