Carg13506 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg13506
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionZinc finger protein 3
LocationCarg_Chr08: 3177508 .. 3178375 (+)
RNA-Seq ExpressionCarg13506
SyntenyCarg13506
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATAGCCACCAAAATGCTTACAGGCGAGACAGAAAAGTGGCTAAAACACCTCATAAGTTGGGTATCAATCCGAGCGTGTGCGCTCTTGCTCTGCAGGGCTTCAGTAAATCACTTGGAATTCAAGCGCATTCAGTGATTCACAAGCCTTCTTCATATGCACCAATTATTGGTTCCTTTCATCCTTTTGAGCCTGATGTCTGGGACATGCAGCCTCTTTACAAGCAAGTGGCAGCTGGCCAATGGGCATCGCTGGAGAATTATCTGTCGGGGGCCTCACCAGTACTGCCATCAGGCAGGGGAGCAGCAAGGTTTGACGGCGACATGGCGCTGTCACCTAATAGAGACTCGTGGTTCGATCCAAAACATTATTATAATGAACTGCATGAGCTACACTGTTTAGGTTTGTCCCTGAGGCTGTAACTGTAAGAAGATGAAACAAAAGTTTACCTTCTCTGGCCGCTTTACTTTCTATGGGAGAGGTTTCCACACTCTTATAAGAAAGGTTTCGTTCTCCTCTTCAACCAATGTGGGATCTTACAATCCACCCCATCGGGGTCCTAATGTCCTCGCTACCACACTGTTCGGTGTTTGGCTTGGATGCCATTTGTAACAACCCAAGTCCACCGCAGATATTGTCCTCTTTAGACTTTCTCTTTGGTAAAAAAAAAGTGCGAACTCTTGTTTCATGTTTGACATAGACGATAACACTAATACGCATGGAAAAAAAACTGTGAAAGAAGGAAAAGGGAAGACCCAACAGATCATCTCTACTGAAATCAAGTAGGTTTAATGTGGCATAAGATTGTCGACAAGCCATTTTCTTGATTTCATACCTTTTATACTTTACAGTCGATTAATCCACTAG

mRNA sequence

ATGGATAGCCACCAAAATGCTTACAGGCGAGACAGAAAAGTGGCTAAAACACCTCATAAGTTGGGTATCAATCCGAGCGTGTGCGCTCTTGCTCTGCAGGGCTTCAGTAAATCACTTGGAATTCAAGCGCATTCAGTGATTCACAAGCCTTCTTCATATGCACCAATTATTGGTTCCTTTCATCCTTTTGAGCCTGATGTCTGGGACATGCAGCCTCTTTACAAGCAAGTGGCAGCTGGCCAATGGGCATCGCTGGAGAATTATCTGTCGGGGGCCTCACCAGTACTGCCATCAGGCAGGGGAGCAGCAAGGTTTGACGGCGACATGGCGCTGTCACCTAATAGAGACTCGTGTCGATTAATCCACTAG

Coding sequence (CDS)

ATGGATAGCCACCAAAATGCTTACAGGCGAGACAGAAAAGTGGCTAAAACACCTCATAAGTTGGGTATCAATCCGAGCGTGTGCGCTCTTGCTCTGCAGGGCTTCAGTAAATCACTTGGAATTCAAGCGCATTCAGTGATTCACAAGCCTTCTTCATATGCACCAATTATTGGTTCCTTTCATCCTTTTGAGCCTGATGTCTGGGACATGCAGCCTCTTTACAAGCAAGTGGCAGCTGGCCAATGGGCATCGCTGGAGAATTATCTGTCGGGGGCCTCACCAGTACTGCCATCAGGCAGGGGAGCAGCAAGGTTTGACGGCGACATGGCGCTGTCACCTAATAGAGACTCGTGTCGATTAATCCACTAG

Protein sequence

MDSHQNAYRRDRKVAKTPHKLGINPSVCALALQGFSKSLGIQAHSVIHKPSSYAPIIGSFHPFEPDVWDMQPLYKQVAAGQWASLENYLSGASPVLPSGRGAARFDGDMALSPNRDSCRLIH
Homology
BLAST of Carg13506 vs. NCBI nr
Match: KAG7025715.1 (hypothetical protein SDJN02_12213, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 257.3 bits (656), Expect = 6.7e-65
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 0

Query: 1   MDSHQNAYRRDRKVAKTPHKLGINPSVCALALQGFSKSLGIQAHSVIHKPSSYAPIIGSF 60
           MDSHQNAYRRDRKVAKTPHKLGINPSVCALALQGFSKSLGIQAHSVIHKPSSYAPIIGSF
Sbjct: 1   MDSHQNAYRRDRKVAKTPHKLGINPSVCALALQGFSKSLGIQAHSVIHKPSSYAPIIGSF 60

Query: 61  HPFEPDVWDMQPLYKQVAAGQWASLENYLSGASPVLPSGRGAARFDGDMALSPNRDSCRL 120
           HPFEPDVWDMQPLYKQVAAGQWASLENYLSGASPVLPSGRGAARFDGDMALSPNRDSCRL
Sbjct: 61  HPFEPDVWDMQPLYKQVAAGQWASLENYLSGASPVLPSGRGAARFDGDMALSPNRDSCRL 120

Query: 121 IH 123
           IH
Sbjct: 121 IH 122

BLAST of Carg13506 vs. NCBI nr
Match: KAG6593367.1 (hypothetical protein SDJN03_12843, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 241.1 bits (614), Expect = 4.9e-60
Identity = 116/117 (99.15%), Postives = 116/117 (99.15%), Query Frame = 0

Query: 1   MDSHQNAYRRDRKVAKTPHKLGINPSVCALALQGFSKSLGIQAHSVIHKPSSYAPIIGSF 60
           MDSHQNAYRRDRKVAKTPHKLGINPSVCALALQGFSKSLGIQAHSVIHKPSSYAPIIGSF
Sbjct: 1   MDSHQNAYRRDRKVAKTPHKLGINPSVCALALQGFSKSLGIQAHSVIHKPSSYAPIIGSF 60

Query: 61  HPFEPDVWDMQPLYKQVAAGQWASLENYLSGASPVLPSGRGAARFDGDMALSPNRDS 118
           HPFE DVWDMQPLYKQVAAGQWASLENYLSGASPVLPSGRGAARFDGDMALSPNRDS
Sbjct: 61  HPFELDVWDMQPLYKQVAAGQWASLENYLSGASPVLPSGRGAARFDGDMALSPNRDS 117

BLAST of Carg13506 vs. NCBI nr
Match: KAG6575625.1 (Zinc finger protein 3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 146.7 bits (369), Expect = 1.3e-31
Identity = 72/123 (58.54%), Postives = 85/123 (69.11%), Query Frame = 0

Query: 1   MDSHQNAYRRDRKVAKTPHKLGIN------PSVCALALQGFSKSLGIQAHSVIHKPSSYA 60
           +  HQNA+ R RK AK  HKL  N       SV +L  QGF++SLGIQ HS+IHKP S+A
Sbjct: 84  LGGHQNAHNRKRKKAKPAHKLVTNSTDCKHSSVSSLPFQGFNRSLGIQMHSMIHKPFSHA 143

Query: 61  PIIGSFHPFEPDVWDMQPLYKQVAAGQWASLENYLSGASPVLPSGRGAARFDGDMALSPN 118
           P+ GSFHPF+P+VWD QPLY QVA G+W   +NY SGASPVLPS  GA  FDG   LS N
Sbjct: 144 PVFGSFHPFKPEVWDRQPLYTQVATGKWPLSKNYRSGASPVLPSSSGATGFDGGWRLSSN 203

BLAST of Carg13506 vs. NCBI nr
Match: KAG7014175.1 (Zinc finger protein 3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 146.0 bits (367), Expect = 2.2e-31
Identity = 73/123 (59.35%), Postives = 85/123 (69.11%), Query Frame = 0

Query: 1   MDSHQNAYRRDRKVAKTPHKLGIN------PSVCALALQGFSKSLGIQAHSVIHKPSSYA 60
           +  HQNA+ R RK AK  HKL  N       SV +L  QGF++SLGIQ HS+IHKP S+A
Sbjct: 112 LGGHQNAHNRKRKKAKPAHKLVTNSTDCKHSSVSSLPFQGFNRSLGIQMHSMIHKPFSHA 171

Query: 61  PIIGSFHPFEPDVWDMQPLYKQVAAGQWASLENYLSGASPVLPSGRGAARFDGDMALSPN 118
           P+ GSFHPFE +VWD QPLY QVA G+W   +NY SGASPVLPS  GAA FDG   LS N
Sbjct: 172 PVFGSFHPFELEVWDRQPLYTQVATGKWPLSKNYQSGASPVLPSSSGAAGFDGGWRLSSN 231

BLAST of Carg13506 vs. NCBI nr
Match: XP_023548450.1 (zinc finger protein 3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 141.4 bits (355), Expect = 5.3e-30
Identity = 72/123 (58.54%), Postives = 84/123 (68.29%), Query Frame = 0

Query: 1   MDSHQNAYRRDRKVAKTPHKLGIN------PSVCALALQGFSKSLGIQAHSVIHKPSSYA 60
           +  HQNA+ R RK+A+T HKL  N       SV +L  QGF++SLGIQ HS+IHKP S+A
Sbjct: 85  LGGHQNAHNRKRKMAQTGHKLVTNSTDCKQSSVSSLPFQGFNRSLGIQMHSMIHKPFSHA 144

Query: 61  PIIGSFHPFEPDVWDMQPLYKQVAAGQWASLENYLSGASPVLPSGRGAARFDGDMALSPN 118
           P+ GSF  FE  VWD QPLY QVA+G W   ENY SGASPVLPS  GAA FDG   LS N
Sbjct: 145 PVFGSFRSFESKVWDRQPLYTQVASGIWPLSENYQSGASPVLPSSSGAAGFDGGWRLSSN 204

BLAST of Carg13506 vs. ExPASy Swiss-Prot
Match: Q39262 (Zinc finger protein 3 OS=Arabidopsis thaliana OX=3702 GN=ZFP3 PE=1 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 3.3e-06
Identity = 33/99 (33.33%), Postives = 50/99 (50.51%), Query Frame = 0

Query: 1   MDSHQNAYRRDRKVAKTPHKLGINPSVCALALQGFS-----------KSLGIQAHSVIHK 60
           +  HQNA++R+R +AK   ++  + S       GFS           +SLGIQAHS+ HK
Sbjct: 76  LGGHQNAHKRERTLAKRGQRMAASASAFGHP-YGFSPLPFHGQYNNHRSLGIQAHSISHK 135

Query: 61  PSSYAPIIGSFHPFEPDVWDMQPLYKQVAAGQWASLENY 89
            SSY    G +       W   P  +Q A G++ S++N+
Sbjct: 136 LSSYNGFGGHYGQIN---WSRLPFDQQPAIGKFPSMDNF 170

BLAST of Carg13506 vs. ExPASy TrEMBL
Match: A0A5D3CH42 (Zinc finger protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G001750 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 1.2e-22
Identity = 60/125 (48.00%), Postives = 82/125 (65.60%), Query Frame = 0

Query: 1   MDSHQNAYRRDRKVAKTPHKLGINPSVCALALQGFSKSLGIQAHSVIHKPSSYAPIIGSF 60
           +  HQNA+ R+RK+AKT  K+  N + C      +SKSLGIQA S+IHKP SY+P+ GSF
Sbjct: 103 LGGHQNAHSRERKMAKTSSKMVTNSTECK-----YSKSLGIQARSMIHKPFSYSPVFGSF 162

Query: 61  HPFEPDVWDMQPLYKQVAAGQWASLENYLSGASPVLPSGRGAARFDG---DMALSPNRDS 120
           HPF+ +  + Q LY+Q+AAGQW S +NYLS  SPV PS  GA    G   + +L  ++ +
Sbjct: 163 HPFQLEAKNRQSLYEQLAAGQWPSKKNYLSRTSPVPPSTSGATSCAGWTLNDSLLDSKRT 222

Query: 121 CRLIH 123
           C  +H
Sbjct: 223 CNELH 222

BLAST of Carg13506 vs. ExPASy TrEMBL
Match: A0A1S3CEM5 (zinc finger protein 1 OS=Cucumis melo OX=3656 GN=LOC103500023 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 1.5e-22
Identity = 60/125 (48.00%), Postives = 82/125 (65.60%), Query Frame = 0

Query: 1   MDSHQNAYRRDRKVAKTPHKLGINPSVCALALQGFSKSLGIQAHSVIHKPSSYAPIIGSF 60
           +  HQNA+ R+RK+AKT  K+  N + C      +SKSLGIQA S+IHKP SY+P+ GSF
Sbjct: 98  LGGHQNAHSRERKMAKTSSKMVTNSTGCK-----YSKSLGIQARSMIHKPFSYSPVFGSF 157

Query: 61  HPFEPDVWDMQPLYKQVAAGQWASLENYLSGASPVLPSGRGAARFDG---DMALSPNRDS 120
           HPF+ +  + Q LY+Q+AAGQW S +NYLS  SPV PS  GA    G   + +L  ++ +
Sbjct: 158 HPFQLEAKNRQSLYEQLAAGQWPSKKNYLSRTSPVPPSTSGATSCAGWTLNDSLLDSKRT 217

Query: 121 CRLIH 123
           C  +H
Sbjct: 218 CNELH 217

BLAST of Carg13506 vs. ExPASy TrEMBL
Match: A0A6J1DKR7 (zinc finger protein 1-like OS=Momordica charantia OX=3673 GN=LOC111021988 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 2.6e-22
Identity = 66/124 (53.23%), Postives = 83/124 (66.94%), Query Frame = 0

Query: 1   MDSHQNAYRRDRKVAKTPHKLG------INPSVCALALQGFSKSLGIQAHSVIHKP-SSY 60
           +  HQNA+ R RK+AK   KL          SV +++L GF++SLGIQAH++I KP +S+
Sbjct: 99  LGGHQNAHSRQRKLAKIGRKLDHVSSEYKFSSVSSISLHGFNRSLGIQAHTMIQKPCASH 158

Query: 61  APIIGSFHPFEPDVWDMQPLYKQVAAGQWASLENYLSGASPVLPSGRGAARFDGDMALSP 118
           API GSFHP E DVWD Q LY ++AAG+  S E++LSG S V  S RGAARFDG   LSP
Sbjct: 159 APIFGSFHPSELDVWDRQHLYTKLAAGR-PSPESFLSGDSSVPSSSRGAARFDGGWMLSP 218

BLAST of Carg13506 vs. ExPASy TrEMBL
Match: A0A0A0K8M2 (C2H2-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G432050 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 5.8e-22
Identity = 62/127 (48.82%), Postives = 80/127 (62.99%), Query Frame = 0

Query: 1   MDSHQNAYRRDRKVAKTPHKLGINPSVCALALQGFSKSLGIQAHSVIHKPSSYAPIIGSF 60
           +  HQNA+ R+RK+AKT +K+  N + C      +SKSLGIQA S+IHKP S++ + GSF
Sbjct: 98  LGGHQNAHSRERKIAKTGNKMVTNSTACK-----YSKSLGIQARSMIHKPFSHSSVFGSF 157

Query: 61  HPFEPDVWDMQPLYKQVAAGQWASLENYLSGASPVLPSGRGAARFDG-----DMALSPNR 120
           HPF+ +    Q LY+QVAAGQW S +NYLS  SPV PS  GA    G     D  L  NR
Sbjct: 158 HPFQLEAKSRQFLYEQVAAGQWPSQKNYLSRTSPVPPSTSGATSCAGWTLNNDSLLDSNR 217

Query: 121 DSCRLIH 123
            +C  +H
Sbjct: 218 -TCNELH 218

BLAST of Carg13506 vs. ExPASy TrEMBL
Match: A0A6A4M340 (C2H2-type domain-containing protein (Fragment) OS=Rhododendron williamsianum OX=262921 GN=C3L33_00389 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 6.0e-11
Identity = 50/118 (42.37%), Postives = 66/118 (55.93%), Query Frame = 0

Query: 1   MDSHQNAYRRDRKVAKTPHKLGI----NPSVCALALQG-FSKSLGIQAHSVIHKPSSYAP 60
           +  HQNA++R+R +AK   K+G      PS+ +L L G  ++SLGIQ HS+I+KP+    
Sbjct: 113 LGGHQNAHKRERTLAKRGPKIGSYPQPYPSLASLPLHGSLNRSLGIQVHSMINKPAFLPT 172

Query: 61  IIGSFHPFEPDVWDMQPLYKQVAAGQWASLENYLSGASPVLPSGRGAARFDGDMALSP 114
            IGS H      W   P+ +Q A G+ A  ENY  G S    S  GAARFDG    SP
Sbjct: 173 TIGSSHVQGRYGWSRNPIDQQPALGRIAP-ENYHVGLSVGSSSSGGAARFDGVRKFSP 229

BLAST of Carg13506 vs. TAIR 10
Match: AT5G25160.1 (zinc finger protein 3 )

HSP 1 Score: 52.8 bits (125), Expect = 2.3e-07
Identity = 33/99 (33.33%), Postives = 50/99 (50.51%), Query Frame = 0

Query: 1   MDSHQNAYRRDRKVAKTPHKLGINPSVCALALQGFS-----------KSLGIQAHSVIHK 60
           +  HQNA++R+R +AK   ++  + S       GFS           +SLGIQAHS+ HK
Sbjct: 76  LGGHQNAHKRERTLAKRGQRMAASASAFGHP-YGFSPLPFHGQYNNHRSLGIQAHSISHK 135

Query: 61  PSSYAPIIGSFHPFEPDVWDMQPLYKQVAAGQWASLENY 89
            SSY    G +       W   P  +Q A G++ S++N+
Sbjct: 136 LSSYNGFGGHYGQIN---WSRLPFDQQPAIGKFPSMDNF 170

BLAST of Carg13506 vs. TAIR 10
Match: AT5G10970.1 (C2H2 and C2HC zinc fingers superfamily protein )

HSP 1 Score: 52.4 bits (124), Expect = 3.0e-07
Identity = 39/121 (32.23%), Postives = 55/121 (45.45%), Query Frame = 0

Query: 1   MDSHQNAYRRDRKVAKT----------PHKLGINPSVCALALQGFSKSLGIQAHSVIHKP 60
           +  HQNA++R+R +AK            H  G  P       Q  +++LGIQAHS+ HKP
Sbjct: 119 LGGHQNAHKRERTLAKRGQRMASAAAFGHPYGFAP--VPFHGQYSNRTLGIQAHSMSHKP 178

Query: 61  SSYAPIIGSFHPFEPDVWDMQPLYKQVAAGQWASLENYLSG-----ASPVLPSGRGAARF 107
           SSY    G +       W   PL +Q A  +  S EN+ +      A P+  +     RF
Sbjct: 179 SSYNVYGGEYGQIN---WSRIPLVQQPAIAKLTSTENHYNHHQMMIAPPLTSTCENIGRF 234

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7025715.16.7e-65100.00hypothetical protein SDJN02_12213, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6593367.14.9e-6099.15hypothetical protein SDJN03_12843, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6575625.11.3e-3158.54Zinc finger protein 3, partial [Cucurbita argyrosperma subsp. sororia][more]
KAG7014175.12.2e-3159.35Zinc finger protein 3, partial [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_023548450.15.3e-3058.54zinc finger protein 3-like [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
Q392623.3e-0633.33Zinc finger protein 3 OS=Arabidopsis thaliana OX=3702 GN=ZFP3 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
A0A5D3CH421.2e-2248.00Zinc finger protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold45... [more]
A0A1S3CEM51.5e-2248.00zinc finger protein 1 OS=Cucumis melo OX=3656 GN=LOC103500023 PE=4 SV=1[more]
A0A6J1DKR72.6e-2253.23zinc finger protein 1-like OS=Momordica charantia OX=3673 GN=LOC111021988 PE=4 S... [more]
A0A0A0K8M25.8e-2248.82C2H2-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G432050 P... [more]
A0A6A4M3406.0e-1142.37C2H2-type domain-containing protein (Fragment) OS=Rhododendron williamsianum OX=... [more]
Match NameE-valueIdentityDescription
AT5G25160.12.3e-0733.33zinc finger protein 3 [more]
AT5G10970.13.0e-0732.23C2H2 and C2HC zinc fingers superfamily protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg13506-RACarg13506-RAmRNA