Carg13506 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGATAGCCACCAAAATGCTTACAGGCGAGACAGAAAAGTGGCTAAAACACCTCATAAGTTGGGTATCAATCCGAGCGTGTGCGCTCTTGCTCTGCAGGGCTTCAGTAAATCACTTGGAATTCAAGCGCATTCAGTGATTCACAAGCCTTCTTCATATGCACCAATTATTGGTTCCTTTCATCCTTTTGAGCCTGATGTCTGGGACATGCAGCCTCTTTACAAGCAAGTGGCAGCTGGCCAATGGGCATCGCTGGAGAATTATCTGTCGGGGGCCTCACCAGTACTGCCATCAGGCAGGGGAGCAGCAAGGTTTGACGGCGACATGGCGCTGTCACCTAATAGAGACTCGTGGTTCGATCCAAAACATTATTATAATGAACTGCATGAGCTACACTGTTTAGGTTTGTCCCTGAGGCTGTAACTGTAAGAAGATGAAACAAAAGTTTACCTTCTCTGGCCGCTTTACTTTCTATGGGAGAGGTTTCCACACTCTTATAAGAAAGGTTTCGTTCTCCTCTTCAACCAATGTGGGATCTTACAATCCACCCCATCGGGGTCCTAATGTCCTCGCTACCACACTGTTCGGTGTTTGGCTTGGATGCCATTTGTAACAACCCAAGTCCACCGCAGATATTGTCCTCTTTAGACTTTCTCTTTGGTAAAAAAAAAGTGCGAACTCTTGTTTCATGTTTGACATAGACGATAACACTAATACGCATGGAAAAAAAACTGTGAAAGAAGGAAAAGGGAAGACCCAACAGATCATCTCTACTGAAATCAAGTAGGTTTAATGTGGCATAAGATTGTCGACAAGCCATTTTCTTGATTTCATACCTTTTATACTTTACAGTCGATTAATCCACTAG ATGGATAGCCACCAAAATGCTTACAGGCGAGACAGAAAAGTGGCTAAAACACCTCATAAGTTGGGTATCAATCCGAGCGTGTGCGCTCTTGCTCTGCAGGGCTTCAGTAAATCACTTGGAATTCAAGCGCATTCAGTGATTCACAAGCCTTCTTCATATGCACCAATTATTGGTTCCTTTCATCCTTTTGAGCCTGATGTCTGGGACATGCAGCCTCTTTACAAGCAAGTGGCAGCTGGCCAATGGGCATCGCTGGAGAATTATCTGTCGGGGGCCTCACCAGTACTGCCATCAGGCAGGGGAGCAGCAAGGTTTGACGGCGACATGGCGCTGTCACCTAATAGAGACTCGTGTCGATTAATCCACTAG ATGGATAGCCACCAAAATGCTTACAGGCGAGACAGAAAAGTGGCTAAAACACCTCATAAGTTGGGTATCAATCCGAGCGTGTGCGCTCTTGCTCTGCAGGGCTTCAGTAAATCACTTGGAATTCAAGCGCATTCAGTGATTCACAAGCCTTCTTCATATGCACCAATTATTGGTTCCTTTCATCCTTTTGAGCCTGATGTCTGGGACATGCAGCCTCTTTACAAGCAAGTGGCAGCTGGCCAATGGGCATCGCTGGAGAATTATCTGTCGGGGGCCTCACCAGTACTGCCATCAGGCAGGGGAGCAGCAAGGTTTGACGGCGACATGGCGCTGTCACCTAATAGAGACTCGTGTCGATTAATCCACTAG MDSHQNAYRRDRKVAKTPHKLGINPSVCALALQGFSKSLGIQAHSVIHKPSSYAPIIGSFHPFEPDVWDMQPLYKQVAAGQWASLENYLSGASPVLPSGRGAARFDGDMALSPNRDSCRLIH Homology
BLAST of Carg13506 vs. NCBI nr
Match: KAG7025715.1 (hypothetical protein SDJN02_12213, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 257.3 bits (656), Expect = 6.7e-65 Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 0
BLAST of Carg13506 vs. NCBI nr
Match: KAG6593367.1 (hypothetical protein SDJN03_12843, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 241.1 bits (614), Expect = 4.9e-60 Identity = 116/117 (99.15%), Postives = 116/117 (99.15%), Query Frame = 0
BLAST of Carg13506 vs. NCBI nr
Match: KAG6575625.1 (Zinc finger protein 3, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 146.7 bits (369), Expect = 1.3e-31 Identity = 72/123 (58.54%), Postives = 85/123 (69.11%), Query Frame = 0
BLAST of Carg13506 vs. NCBI nr
Match: KAG7014175.1 (Zinc finger protein 3, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 146.0 bits (367), Expect = 2.2e-31 Identity = 73/123 (59.35%), Postives = 85/123 (69.11%), Query Frame = 0
BLAST of Carg13506 vs. NCBI nr
Match: XP_023548450.1 (zinc finger protein 3-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 141.4 bits (355), Expect = 5.3e-30 Identity = 72/123 (58.54%), Postives = 84/123 (68.29%), Query Frame = 0
BLAST of Carg13506 vs. ExPASy Swiss-Prot
Match: Q39262 (Zinc finger protein 3 OS=Arabidopsis thaliana OX=3702 GN=ZFP3 PE=1 SV=1) HSP 1 Score: 52.8 bits (125), Expect = 3.3e-06 Identity = 33/99 (33.33%), Postives = 50/99 (50.51%), Query Frame = 0
BLAST of Carg13506 vs. ExPASy TrEMBL
Match: A0A5D3CH42 (Zinc finger protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G001750 PE=4 SV=1) HSP 1 Score: 115.9 bits (289), Expect = 1.2e-22 Identity = 60/125 (48.00%), Postives = 82/125 (65.60%), Query Frame = 0
BLAST of Carg13506 vs. ExPASy TrEMBL
Match: A0A1S3CEM5 (zinc finger protein 1 OS=Cucumis melo OX=3656 GN=LOC103500023 PE=4 SV=1) HSP 1 Score: 115.5 bits (288), Expect = 1.5e-22 Identity = 60/125 (48.00%), Postives = 82/125 (65.60%), Query Frame = 0
BLAST of Carg13506 vs. ExPASy TrEMBL
Match: A0A6J1DKR7 (zinc finger protein 1-like OS=Momordica charantia OX=3673 GN=LOC111021988 PE=4 SV=1) HSP 1 Score: 114.8 bits (286), Expect = 2.6e-22 Identity = 66/124 (53.23%), Postives = 83/124 (66.94%), Query Frame = 0
BLAST of Carg13506 vs. ExPASy TrEMBL
Match: A0A0A0K8M2 (C2H2-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G432050 PE=4 SV=1) HSP 1 Score: 113.6 bits (283), Expect = 5.8e-22 Identity = 62/127 (48.82%), Postives = 80/127 (62.99%), Query Frame = 0
BLAST of Carg13506 vs. ExPASy TrEMBL
Match: A0A6A4M340 (C2H2-type domain-containing protein (Fragment) OS=Rhododendron williamsianum OX=262921 GN=C3L33_00389 PE=4 SV=1) HSP 1 Score: 77.0 bits (188), Expect = 6.0e-11 Identity = 50/118 (42.37%), Postives = 66/118 (55.93%), Query Frame = 0
BLAST of Carg13506 vs. TAIR 10
Match: AT5G25160.1 (zinc finger protein 3 ) HSP 1 Score: 52.8 bits (125), Expect = 2.3e-07 Identity = 33/99 (33.33%), Postives = 50/99 (50.51%), Query Frame = 0
BLAST of Carg13506 vs. TAIR 10
Match: AT5G10970.1 (C2H2 and C2HC zinc fingers superfamily protein ) HSP 1 Score: 52.4 bits (124), Expect = 3.0e-07 Identity = 39/121 (32.23%), Postives = 55/121 (45.45%), Query Frame = 0
The following BLAST results are available for this feature:
Relationships
The following mRNA feature(s) are a part of this gene:
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