Carg13502 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg13502
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	photosynthetic NDH subunit of subcomplex B 1, chloroplastic
Location	Carg_Chr08: 3154714 .. 3155878 (+)
RNA-Seq Expression	Carg13502
Synteny	Carg13502

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGCTCACCAATCAGTTCGAGATCTACCAGTGAGTACATTGTTCTCATTAATGCACTTATTTTCCATTAGTTGATTGCTTGTCAAGGAGTGAACTTGTTTTGTAAAGTAAATTTCTCTTTTGTGAATGCCTGACCACTCTCGTTTCTTTACTGCTAATTTTCATCTCGAGGGGATCGTTACCTGTGCTTGCATTTTCCCACGACGTTATGACTCATGTATGGAAAGTTGAAAAAATGAAGAACAAAAGGGCATAAATTGTATTTCTTCTTGAAAAGATTGAATGAACTTGATCTCGACCGATCATTTATCCTAAGCTCGATGGGTAAAGAACTCGTAGTCCTAAATTTTTGGTTGAGTTTGAGTCAAACTTTAAATTTTGTGTCTTTTGAAAATGTTCCATAGTTCTTTTCAATTTTGTGTTTAATTTTGATAGAGATTTCATATATTTACATTTTAGATCTTTTCATATCATGGTGGTGTGGTTCACACGTTCATCCACCTTTTCTCAATTTTGCTAAAAGTTTACTTTTTGTTTTTTTTTTTTTAATGATTATTCAATTAATCTTATTTTTCTTCCCTTTTCAATATTTTTGTTTAATTTAAACTGCAACTTATGATCATACTTAAAAAAAGTTTATACAAAATTTACGTTATATTTAAAAAATGTCCTAACTTGACTTACTCAACCAATGAACATCTTTATATACTAACATGATTAGATTGTTCGAGGTTGGTCACTCTCCTTTGCAGGGATGGATCTTGAAATTTAGAATAAAGTTTAAATATTTCAAACAACGGTTGAACTTGTATCCAGTGGTTATTAGGTCAGTCACGTTAGATAATTTTTGGGTCCATAGATGTTGAGATTGGTGTGAGAACTGGGAAAAATGGGATGATTTGAGTGGTGCTAACTTGTTCAAGGACAGGTACTATGGCATGGTCTTGTCAACCAAGCTAGCAGGGCTTGGACATGCAGTGTTTTTGTTAATGACAGCAGCCAGAGACAGGGTGAGCTACGTTTATCTAGACGTGAATGCAGCTGGAGCAGGGCTTTTTCTTGTCTCAAAACATTTAAACCAAATGCCTCTAATCTTTGATGCCTTCAAGGCTCATTTTCTTGATTTGGGTACCATGAGGCCCTATCGCAGCCTTCTCAGGTAG

mRNA sequence

ATGAAGCTCACCAATCAGTTCGAGATCTACCAGTACTATGGCATGGTCTTGTCAACCAAGCTAGCAGGGCTTGGACATGCAGTGTTTTTGTTAATGACAGCAGCCAGAGACAGGGTGAGCTACGTTTATCTAGACGTGAATGCAGCTGGAGCAGGGCTTTTTCTTGTCTCAAAACATTTAAACCAAATGCCTCTAATCTTTGATGCCTTCAAGGCTCATTTTCTTGATTTGGGTACCATGAGGCCCTATCGCAGCCTTCTCAGGTAG

Coding sequence (CDS)

ATGAAGCTCACCAATCAGTTCGAGATCTACCAGTACTATGGCATGGTCTTGTCAACCAAGCTAGCAGGGCTTGGACATGCAGTGTTTTTGTTAATGACAGCAGCCAGAGACAGGGTGAGCTACGTTTATCTAGACGTGAATGCAGCTGGAGCAGGGCTTTTTCTTGTCTCAAAACATTTAAACCAAATGCCTCTAATCTTTGATGCCTTCAAGGCTCATTTTCTTGATTTGGGTACCATGAGGCCCTATCGCAGCCTTCTCAGGTAG

Protein sequence

MKLTNQFEIYQYYGMVLSTKLAGLGHAVFLLMTAARDRVSYVYLDVNAAGAGLFLVSKHLNQMPLIFDAFKAHFLDLGTMRPYRSLLR

Homology

[Close]

BLAST of Carg13502 vs. NCBI nr
Match: KAG7025711.1 (Photosynthetic NDH subunit of subcomplex B 1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 177.2 bits (448), Expect = 6.3e-41
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1  MKLTNQFEIYQYYGMVLSTKLAGLGHAVFLLMTAARDRVSYVYLDVNAAGAGLFLVSKHL 60
          MKLTNQFEIYQYYGMVLSTKLAGLGHAVFLLMTAARDRVSYVYLDVNAAGAGLFLVSKHL
Sbjct: 1  MKLTNQFEIYQYYGMVLSTKLAGLGHAVFLLMTAARDRVSYVYLDVNAAGAGLFLVSKHL 60

Query: 61 NQMPLIFDAFKAHFLDLGTMRPYRSLLR 89
          NQMPLIFDAFKAHFLDLGTMRPYRSLLR
Sbjct: 61 NQMPLIFDAFKAHFLDLGTMRPYRSLLR 88

[Close]

BLAST of Carg13502 vs. NCBI nr
Match: XP_038896546.1 (photosynthetic NDH subunit of subcomplex B 1, chloroplastic [Benincasa hispida])

HSP 1 Score: 79.7 bits (195), Expect = 1.4e-11
Identity = 39/45 (86.67%), Postives = 41/45 (91.11%), Query Frame = 0


Query: 11  QYYGMVLSTKLAGLGHAVFLLMTAARDRVSYVYLDVNAAGAGLFL 56
           +YY MVLSTKLAGLGHAVFL MT ARDRVSY+Y DVNAAGAGLFL
Sbjct: 202 RYYDMVLSTKLAGLGHAVFLFMTTARDRVSYIYPDVNAAGAGLFL 246

[Close]

BLAST of Carg13502 vs. NCBI nr
Match: XP_004136098.1 (photosynthetic NDH subunit of subcomplex B 1, chloroplastic [Cucumis sativus] >KGN45218.1 hypothetical protein Csa_015823 [Cucumis sativus])

HSP 1 Score: 79.7 bits (195), Expect = 1.4e-11
Identity = 39/45 (86.67%), Postives = 41/45 (91.11%), Query Frame = 0


Query: 11  QYYGMVLSTKLAGLGHAVFLLMTAARDRVSYVYLDVNAAGAGLFL 56
           +YY MVLSTKLAGLGHAVFL MT ARDRVSY+Y DVNAAGAGLFL
Sbjct: 198 RYYDMVLSTKLAGLGHAVFLFMTTARDRVSYIYPDVNAAGAGLFL 242

[Close]

BLAST of Carg13502 vs. NCBI nr
Match: KAA0058709.1 (photosynthetic NDH subunit of subcomplex B 1 [Cucumis melo var. makuwa] >TYK10515.1 photosynthetic NDH subunit of subcomplex B 1 [Cucumis melo var. makuwa])

HSP 1 Score: 79.0 bits (193), Expect = 2.3e-11
Identity = 38/45 (84.44%), Postives = 41/45 (91.11%), Query Frame = 0


Query: 11  QYYGMVLSTKLAGLGHAVFLLMTAARDRVSYVYLDVNAAGAGLFL 56
           +YY MVLSTKLAG+GHAVFL MT ARDRVSY+Y DVNAAGAGLFL
Sbjct: 198 RYYDMVLSTKLAGIGHAVFLFMTTARDRVSYIYPDVNAAGAGLFL 242

[Close]

BLAST of Carg13502 vs. NCBI nr
Match: XP_008461180.1 (PREDICTED: photosynthetic NDH subunit of subcomplex B 1, chloroplastic [Cucumis melo])

HSP 1 Score: 79.0 bits (193), Expect = 2.3e-11
Identity = 38/45 (84.44%), Postives = 41/45 (91.11%), Query Frame = 0


Query: 11  QYYGMVLSTKLAGLGHAVFLLMTAARDRVSYVYLDVNAAGAGLFL 56
           +YY MVLSTKLAG+GHAVFL MT ARDRVSY+Y DVNAAGAGLFL
Sbjct: 198 RYYDMVLSTKLAGIGHAVFLFMTTARDRVSYIYPDVNAAGAGLFL 242

[Close]

BLAST of Carg13502 vs. ExPASy Swiss-Prot
Match: Q9S9N6 (Photosynthetic NDH subunit of subcomplex B 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PNSB1 PE=2 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 5.8e-13
Identity = 44/82 (53.66%), Postives = 55/82 (67.07%), Query Frame = 0


Query: 11  QYYGMVLSTKLAGLGHAVFLLMTAARDRVSYVYLDVNAAGAGLFL----VSKHLNQMPLI 70
           +YY MVLSTKLAGLGHA FL MT ARDRVSY+Y +VN+AGAGL L     +++ N   L 
Sbjct: 194 RYYDMVLSTKLAGLGHAAFLFMTTARDRVSYIYPNVNSAGAGLMLSETFTAENTNLSELG 253

Query: 71  FDAFKAHFLDLGTMRPYRSLLR 89
           +  +      LG  RP+RS+ R
Sbjct: 254 YSMYTQMEDWLG--RPFRSVPR 273

[Close]

BLAST of Carg13502 vs. ExPASy TrEMBL
Match: A0A0A0K6S9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G431990 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 6.6e-12
Identity = 39/45 (86.67%), Postives = 41/45 (91.11%), Query Frame = 0


Query: 11  QYYGMVLSTKLAGLGHAVFLLMTAARDRVSYVYLDVNAAGAGLFL 56
           +YY MVLSTKLAGLGHAVFL MT ARDRVSY+Y DVNAAGAGLFL
Sbjct: 198 RYYDMVLSTKLAGLGHAVFLFMTTARDRVSYIYPDVNAAGAGLFL 242

[Close]

BLAST of Carg13502 vs. ExPASy TrEMBL
Match: A0A5A7UYW0 (Photosynthetic NDH subunit of subcomplex B 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G001650 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.1e-11
Identity = 38/45 (84.44%), Postives = 41/45 (91.11%), Query Frame = 0


Query: 11  QYYGMVLSTKLAGLGHAVFLLMTAARDRVSYVYLDVNAAGAGLFL 56
           +YY MVLSTKLAG+GHAVFL MT ARDRVSY+Y DVNAAGAGLFL
Sbjct: 198 RYYDMVLSTKLAGIGHAVFLFMTTARDRVSYIYPDVNAAGAGLFL 242

[Close]

BLAST of Carg13502 vs. ExPASy TrEMBL
Match: A0A1S3CEK1 (photosynthetic NDH subunit of subcomplex B 1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103499839 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.1e-11
Identity = 38/45 (84.44%), Postives = 41/45 (91.11%), Query Frame = 0


Query: 11  QYYGMVLSTKLAGLGHAVFLLMTAARDRVSYVYLDVNAAGAGLFL 56
           +YY MVLSTKLAG+GHAVFL MT ARDRVSY+Y DVNAAGAGLFL
Sbjct: 198 RYYDMVLSTKLAGIGHAVFLFMTTARDRVSYIYPDVNAAGAGLFL 242

[Close]

BLAST of Carg13502 vs. ExPASy TrEMBL
Match: A0A6J1CV27 (photosynthetic NDH subunit of subcomplex B 1, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111014527 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.5e-11
Identity = 38/45 (84.44%), Postives = 41/45 (91.11%), Query Frame = 0


Query: 11  QYYGMVLSTKLAGLGHAVFLLMTAARDRVSYVYLDVNAAGAGLFL 56
           +YY MVLSTKLAG+GHAVFL MT ARDRVSY+Y DVNAAGAGLFL
Sbjct: 204 RYYDMVLSTKLAGVGHAVFLFMTTARDRVSYIYPDVNAAGAGLFL 248

[Close]

BLAST of Carg13502 vs. ExPASy TrEMBL
Match: A0A392NQR7 (Uncharacterized protein (Fragment) OS=Trifolium medium OX=97028 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 2.5e-11
Identity = 42/78 (53.85%), Postives = 52/78 (66.67%), Query Frame = 0


Query: 11  QYYGMVLSTKLAGLGHAVFLLMTAARDRVSYVYLDVNAAGAGLFLVSKHLNQMPLIFDA- 70
           +YY MVLSTKLAG+GHA +L MT ARDRVSYVY +VNAAGAGLFL        P + +  
Sbjct: 33  RYYDMVLSTKLAGIGHAAYLFMTTARDRVSYVYPNVNAAGAGLFLSETFTPDSPNLSEGG 92

Query: 71  -FKAHFLDLGTMRPYRSL 87
               H ++    RP+RS+
Sbjct: 93  YHMYHQMEDWLGRPFRSI 110

[Close]

BLAST of Carg13502 vs. TAIR 10
Match: AT1G15980.1 (NDH-dependent cyclic electron flow 1 )

HSP 1 Score: 74.7 bits (182), Expect = 4.1e-14
Identity = 44/82 (53.66%), Postives = 55/82 (67.07%), Query Frame = 0


Query: 11  QYYGMVLSTKLAGLGHAVFLLMTAARDRVSYVYLDVNAAGAGLFL----VSKHLNQMPLI 70
           +YY MVLSTKLAGLGHA FL MT ARDRVSY+Y +VN+AGAGL L     +++ N   L 
Sbjct: 194 RYYDMVLSTKLAGLGHAAFLFMTTARDRVSYIYPNVNSAGAGLMLSETFTAENTNLSELG 253

Query: 71  FDAFKAHFLDLGTMRPYRSLLR 89
           +  +      LG  RP+RS+ R
Sbjct: 254 YSMYTQMEDWLG--RPFRSVPR 273

The following BLAST results are available for this feature:

BLAST of Carg13502 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7025711.1	6.3e-41	100.00	Photosynthetic NDH subunit of subcomplex B 1, chloroplastic, partial [Cucurbita ...	[more]
XP_038896546.1	1.4e-11	86.67	photosynthetic NDH subunit of subcomplex B 1, chloroplastic [Benincasa hispida]	[more]
XP_004136098.1	1.4e-11	86.67	photosynthetic NDH subunit of subcomplex B 1, chloroplastic [Cucumis sativus] >K...	[more]
KAA0058709.1	2.3e-11	84.44	photosynthetic NDH subunit of subcomplex B 1 [Cucumis melo var. makuwa] >TYK1051...	[more]
XP_008461180.1	2.3e-11	84.44	PREDICTED: photosynthetic NDH subunit of subcomplex B 1, chloroplastic [Cucumis ...	[more]

BLAST of Carg13502 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9S9N6	5.8e-13	53.66	Photosynthetic NDH subunit of subcomplex B 1, chloroplastic OS=Arabidopsis thali...	[more]

BLAST of Carg13502 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K6S9	6.6e-12	86.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G431990 PE=4 SV=1	[more]
A0A5A7UYW0	1.1e-11	84.44	Photosynthetic NDH subunit of subcomplex B 1 OS=Cucumis melo var. makuwa OX=1194...	[more]
A0A1S3CEK1	1.1e-11	84.44	photosynthetic NDH subunit of subcomplex B 1, chloroplastic OS=Cucumis melo OX=3...	[more]
A0A6J1CV27	1.5e-11	84.44	photosynthetic NDH subunit of subcomplex B 1, chloroplastic OS=Momordica charant...	[more]
A0A392NQR7	2.5e-11	53.85	Uncharacterized protein (Fragment) OS=Trifolium medium OX=97028 PE=4 SV=1	[more]

BLAST of Carg13502 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G15980.1	4.1e-14	53.66	NDH-dependent cyclic electron flow 1	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR044983	Photosynthetic NDH subunit of subcomplex B 1, chloroplastic	PANTHER	PTHR37698	PHOTOSYNTHETIC NDH SUBUNIT OF SUBCOMPLEX B 1, CHLOROPLASTIC	coord: 11..57

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg13502-RA	Carg13502-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009773	photosynthetic electron transport in photosystem I
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0010598	NAD(P)H dehydrogenase complex (plastoquinone)
cellular_component	GO:0009507	chloroplast