Carg13495 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGGTGGCCCTAGACCACATCGAAGAGCCGTCATTGAATTCAGATATCTCTCTCTCTCTCTCTATATATATATTATTCCCACGCTTCCTTTTTCCCTCTGACAAGTTTTCCAACTGTGGAGACCGCGTGGACGGCCTTTCGGGCATCTTGCTCCAGCAGCCGAGGCGTGTTGAAACAGGTAAGCACCACAAAAACATCCGTTCAGCTCGTTCTGTTTGGAATTAGCGGCTTTTGATTTTGTAAGTTTCTCTCTCTCTCTCTCTTTCTCTTTGATCTGCTGTTTCCAACTGATGTGTATCGCTTGAAATTTGCTCGGTATGGTTGTTTATTTTTGTTGGATTTTGGTTGAAGTGTTGGTTGTTTTGATTGAATTCGTTGGGGGATTTGGCTGGGTTTAGATCGGAGCTGTGTTCATACAGCCTTCTGTTGAAGGGATTGAGTGCTTGTTGTTGTAGGTTTAACAATGTGCCTCGATCTGATTTTAGTGTAAATTTTGAGAATTCGATCTTCTGAAACCTTGCCATCTCGTGAGTTTTGTTTTGTGATTTAGTTGTGGTTGTTTATTTGTTTGATTCTTTACGCTCTTTTGGGTGGGAGGAATTTTAGCGTAGAGGTTTCGAAATGATAGGGTTTGGGATTAATTTAGGAACATGGAGGAAGAGTTTCATTTTTGAACCTCTGTAACTTTCTGCTGTTTAAAATGTTCGAATTTTGGGGTTCTTGTTCACATTAAATTTTACTGGCTTACTGTTGCATCTGAATTTTTGGGATTCTTTCTGGTTGTTTTCATCTTTGATAATTAATAAGTAATTAAATTTGCATCATCGACTTTAGCCAATGGACTGCAATTTACCTGGATATATCCATTTTTCAAGTTGCATTTCAAGAACTCGGTCTGCCTATCTTAATGCTTGAAATTTCTGAAGTTATCAAGTCACAACAAGAAGAGTTATATGAGTGAGTTGTGTTAATTTCATGTTCTAGCGACCTTCAGACATGTGCTTGTGGGTTATCTATTTGGATAAATTTTGAGGCACCTTTTGAACTTGCTTGCCTTCTTCTGGGTGGACTAATCAGAATATGGTTTTTTTAGATTGCCATTATGATATTGGTGTTTATGTGACAGGATATGTTGTCTTTCTTTACAATACATTGAAAGTAATTGCTTGATGAGCTACTTTTCTTTCGATTAGAATATATCAAACTGAGGTTAGCTCAACGGTTATTGACATGAACTCTTTCCCTTGAGGGTCGTAGGTTCTAACCCCATGTTTGAAAATTGCATTCTTTGGCTTATTTCTGCATCATAGATTGAAATAAACAACGTTTTCCTGCATTGGGAGTGTTGGTTGCCTCGTTCTTACATCTGTTGGTAATGGAAGAGCTGGAGAACAGTGCTGAATGGTTACTTGGTTGCATTTGTCTTGCATCAGTACAAGAGCCAAGAGATAAAGAATTGTGCTCGTATGAGTACCATTTTTTAGAAAGAAAAAAAGTGCCACTGTTTGGATTTCTTACTTATATATGATGTTTGGAATGTCTTGTTCTTGGTGAAGTCATCATCAACAACATTAGAAACTGAGATCAATTACCCTTCCTCGAAATGTTCTGCTAGCATGCTAAATGAACTTCAATCTTGCTGTGAAAAAAGTTAAAAAATCATGTAGTAAGTTATCTAATCCGTGCTTTACATTTCAGGCTGACTGAGGAGGTTGGATCATGCAACATGGTTCTTGACAGTGTCCTGTCTTCTCCTCACAGGAGGTCCCCATCATTCCGAAAGGCCTTTCCTCCAAATGAGTTGGGTAGTTGGTCGACTCTCGTTCAGCGACATCGCTTCCTCCTCACAGCACTTGTCCTCTTGACTTTTCTTTGCACGATTTACCTTTACTTTGCTGTCACCTTAGGCTCTTCCTCTTGCTCTGGACTGACTGGGGCGCAAAAGGCTCAGTGTCAACTGGAGCTTGCAAAGACTTCCATGGCTAAAGGGAAACTGAAAATTCTTTAATACTCGGGTTAGTGCTCTGCAATTTGTGCATTTTGTTTGTAATTCCGAACCATTTGGGTTGAAGATTT ATGGTGGCCCTAGACCACATCGAAGAGCCGCTGACTGAGGAGGTTGGATCATGCAACATGGTTCTTGACAGTGTCCTGTCTTCTCCTCACAGGAGGTCCCCATCATTCCGAAAGGCCTTTCCTCCAAATGAGTTGGGTAGTTGGTCGACTCTCGTTCAGCGACATCGCTTCCTCCTCACAGCACTTGTCCTCTTGACTTTTCTTTGCACGATTTACCTTTACTTTGCTGTCACCTTAGGCTCTTCCTCTTGCTCTGGACTGACTGGGGCGCAAAAGGCTCAGTGTCAACTGGAGCTTGCAAAGACTTCCATGGCTAAAGGGAAACTGAAAATTCTTTAATACTCGGGTTAGTGCTCTGCAATTTGTGCATTTTGTTTGTAATTCCGAACCATTTGGGTTGAAGATTT ATGGTGGCCCTAGACCACATCGAAGAGCCGCTGACTGAGGAGGTTGGATCATGCAACATGGTTCTTGACAGTGTCCTGTCTTCTCCTCACAGGAGGTCCCCATCATTCCGAAAGGCCTTTCCTCCAAATGAGTTGGGTAGTTGGTCGACTCTCGTTCAGCGACATCGCTTCCTCCTCACAGCACTTGTCCTCTTGACTTTTCTTTGCACGATTTACCTTTACTTTGCTGTCACCTTAGGCTCTTCCTCTTGCTCTGGACTGACTGGGGCGCAAAAGGCTCAGTGTCAACTGGAGCTTGCAAAGACTTCCATGGCTAAAGGGAAACTGAAAATTCTTTAA MVALDHIEEPLTEEVGSCNMVLDSVLSSPHRRSPSFRKAFPPNELGSWSTLVQRHRFLLTALVLLTFLCTIYLYFAVTLGSSSCSGLTGAQKAQCQLELAKTSMAKGKLKIL Homology
BLAST of Carg13495 vs. NCBI nr
Match: KAG7025704.1 (hypothetical protein SDJN02_12202, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 218.0 bits (554), Expect = 4.1e-53 Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0
BLAST of Carg13495 vs. NCBI nr
Match: KAG6593358.1 (hypothetical protein SDJN03_12834, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 198.4 bits (503), Expect = 3.4e-47 Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0
BLAST of Carg13495 vs. NCBI nr
Match: XP_022959742.1 (uncharacterized protein LOC111460722 [Cucurbita moschata] >XP_022959744.1 uncharacterized protein LOC111460722 [Cucurbita moschata] >XP_023515359.1 uncharacterized protein LOC111779417 [Cucurbita pepo subsp. pepo] >XP_023515360.1 uncharacterized protein LOC111779417 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 179.5 bits (454), Expect = 1.6e-41 Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0
BLAST of Carg13495 vs. NCBI nr
Match: XP_023004762.1 (uncharacterized protein LOC111497967 [Cucurbita maxima]) HSP 1 Score: 179.1 bits (453), Expect = 2.1e-41 Identity = 92/93 (98.92%), Postives = 93/93 (100.00%), Query Frame = 0
BLAST of Carg13495 vs. NCBI nr
Match: KAA0058699.1 (hypothetical protein E6C27_scaffold339G001690 [Cucumis melo var. makuwa] >TYK10505.1 hypothetical protein E5676_scaffold459G001550 [Cucumis melo var. makuwa]) HSP 1 Score: 178.3 bits (451), Expect = 3.6e-41 Identity = 95/103 (92.23%), Postives = 99/103 (96.12%), Query Frame = 0
BLAST of Carg13495 vs. ExPASy TrEMBL
Match: A0A6J1H8Z6 (uncharacterized protein LOC111460722 OS=Cucurbita moschata OX=3662 GN=LOC111460722 PE=4 SV=1) HSP 1 Score: 179.5 bits (454), Expect = 7.8e-42 Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0
BLAST of Carg13495 vs. ExPASy TrEMBL
Match: A0A6J1KRB5 (uncharacterized protein LOC111497967 OS=Cucurbita maxima OX=3661 GN=LOC111497967 PE=4 SV=1) HSP 1 Score: 179.1 bits (453), Expect = 1.0e-41 Identity = 92/93 (98.92%), Postives = 93/93 (100.00%), Query Frame = 0
BLAST of Carg13495 vs. ExPASy TrEMBL
Match: A0A5D3CG60 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G001550 PE=4 SV=1) HSP 1 Score: 178.3 bits (451), Expect = 1.7e-41 Identity = 95/103 (92.23%), Postives = 99/103 (96.12%), Query Frame = 0
BLAST of Carg13495 vs. ExPASy TrEMBL
Match: A0A0A0K6S1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G431400 PE=4 SV=1) HSP 1 Score: 175.6 bits (444), Expect = 1.1e-40 Identity = 95/103 (92.23%), Postives = 96/103 (93.20%), Query Frame = 0
BLAST of Carg13495 vs. ExPASy TrEMBL
Match: A0A6J1DQE0 (uncharacterized protein LOC111022141 OS=Momordica charantia OX=3673 GN=LOC111022141 PE=4 SV=1) HSP 1 Score: 161.4 bits (407), Expect = 2.2e-36 Identity = 85/94 (90.43%), Postives = 87/94 (92.55%), Query Frame = 0
BLAST of Carg13495 vs. TAIR 10
Match: AT1G16170.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G79660.1); Has 55 Blast hits to 55 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 55; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 107.5 bits (267), Expect = 7.3e-24 Identity = 59/93 (63.44%), Postives = 74/93 (79.57%), Query Frame = 0
BLAST of Carg13495 vs. TAIR 10
Match: AT1G79660.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G16170.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 100.5 bits (249), Expect = 8.9e-22 Identity = 55/93 (59.14%), Postives = 71/93 (76.34%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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