Carg13495 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg13495
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr08: 3126125 .. 3128200 (-)
RNA-Seq ExpressionCarg13495
SyntenyCarg13495
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGGCCCTAGACCACATCGAAGAGCCGTCATTGAATTCAGATATCTCTCTCTCTCTCTCTATATATATATTATTCCCACGCTTCCTTTTTCCCTCTGACAAGTTTTCCAACTGTGGAGACCGCGTGGACGGCCTTTCGGGCATCTTGCTCCAGCAGCCGAGGCGTGTTGAAACAGGTAAGCACCACAAAAACATCCGTTCAGCTCGTTCTGTTTGGAATTAGCGGCTTTTGATTTTGTAAGTTTCTCTCTCTCTCTCTCTTTCTCTTTGATCTGCTGTTTCCAACTGATGTGTATCGCTTGAAATTTGCTCGGTATGGTTGTTTATTTTTGTTGGATTTTGGTTGAAGTGTTGGTTGTTTTGATTGAATTCGTTGGGGGATTTGGCTGGGTTTAGATCGGAGCTGTGTTCATACAGCCTTCTGTTGAAGGGATTGAGTGCTTGTTGTTGTAGGTTTAACAATGTGCCTCGATCTGATTTTAGTGTAAATTTTGAGAATTCGATCTTCTGAAACCTTGCCATCTCGTGAGTTTTGTTTTGTGATTTAGTTGTGGTTGTTTATTTGTTTGATTCTTTACGCTCTTTTGGGTGGGAGGAATTTTAGCGTAGAGGTTTCGAAATGATAGGGTTTGGGATTAATTTAGGAACATGGAGGAAGAGTTTCATTTTTGAACCTCTGTAACTTTCTGCTGTTTAAAATGTTCGAATTTTGGGGTTCTTGTTCACATTAAATTTTACTGGCTTACTGTTGCATCTGAATTTTTGGGATTCTTTCTGGTTGTTTTCATCTTTGATAATTAATAAGTAATTAAATTTGCATCATCGACTTTAGCCAATGGACTGCAATTTACCTGGATATATCCATTTTTCAAGTTGCATTTCAAGAACTCGGTCTGCCTATCTTAATGCTTGAAATTTCTGAAGTTATCAAGTCACAACAAGAAGAGTTATATGAGTGAGTTGTGTTAATTTCATGTTCTAGCGACCTTCAGACATGTGCTTGTGGGTTATCTATTTGGATAAATTTTGAGGCACCTTTTGAACTTGCTTGCCTTCTTCTGGGTGGACTAATCAGAATATGGTTTTTTTAGATTGCCATTATGATATTGGTGTTTATGTGACAGGATATGTTGTCTTTCTTTACAATACATTGAAAGTAATTGCTTGATGAGCTACTTTTCTTTCGATTAGAATATATCAAACTGAGGTTAGCTCAACGGTTATTGACATGAACTCTTTCCCTTGAGGGTCGTAGGTTCTAACCCCATGTTTGAAAATTGCATTCTTTGGCTTATTTCTGCATCATAGATTGAAATAAACAACGTTTTCCTGCATTGGGAGTGTTGGTTGCCTCGTTCTTACATCTGTTGGTAATGGAAGAGCTGGAGAACAGTGCTGAATGGTTACTTGGTTGCATTTGTCTTGCATCAGTACAAGAGCCAAGAGATAAAGAATTGTGCTCGTATGAGTACCATTTTTTAGAAAGAAAAAAAGTGCCACTGTTTGGATTTCTTACTTATATATGATGTTTGGAATGTCTTGTTCTTGGTGAAGTCATCATCAACAACATTAGAAACTGAGATCAATTACCCTTCCTCGAAATGTTCTGCTAGCATGCTAAATGAACTTCAATCTTGCTGTGAAAAAAGTTAAAAAATCATGTAGTAAGTTATCTAATCCGTGCTTTACATTTCAGGCTGACTGAGGAGGTTGGATCATGCAACATGGTTCTTGACAGTGTCCTGTCTTCTCCTCACAGGAGGTCCCCATCATTCCGAAAGGCCTTTCCTCCAAATGAGTTGGGTAGTTGGTCGACTCTCGTTCAGCGACATCGCTTCCTCCTCACAGCACTTGTCCTCTTGACTTTTCTTTGCACGATTTACCTTTACTTTGCTGTCACCTTAGGCTCTTCCTCTTGCTCTGGACTGACTGGGGCGCAAAAGGCTCAGTGTCAACTGGAGCTTGCAAAGACTTCCATGGCTAAAGGGAAACTGAAAATTCTTTAATACTCGGGTTAGTGCTCTGCAATTTGTGCATTTTGTTTGTAATTCCGAACCATTTGGGTTGAAGATTT

mRNA sequence

ATGGTGGCCCTAGACCACATCGAAGAGCCGCTGACTGAGGAGGTTGGATCATGCAACATGGTTCTTGACAGTGTCCTGTCTTCTCCTCACAGGAGGTCCCCATCATTCCGAAAGGCCTTTCCTCCAAATGAGTTGGGTAGTTGGTCGACTCTCGTTCAGCGACATCGCTTCCTCCTCACAGCACTTGTCCTCTTGACTTTTCTTTGCACGATTTACCTTTACTTTGCTGTCACCTTAGGCTCTTCCTCTTGCTCTGGACTGACTGGGGCGCAAAAGGCTCAGTGTCAACTGGAGCTTGCAAAGACTTCCATGGCTAAAGGGAAACTGAAAATTCTTTAATACTCGGGTTAGTGCTCTGCAATTTGTGCATTTTGTTTGTAATTCCGAACCATTTGGGTTGAAGATTT

Coding sequence (CDS)

ATGGTGGCCCTAGACCACATCGAAGAGCCGCTGACTGAGGAGGTTGGATCATGCAACATGGTTCTTGACAGTGTCCTGTCTTCTCCTCACAGGAGGTCCCCATCATTCCGAAAGGCCTTTCCTCCAAATGAGTTGGGTAGTTGGTCGACTCTCGTTCAGCGACATCGCTTCCTCCTCACAGCACTTGTCCTCTTGACTTTTCTTTGCACGATTTACCTTTACTTTGCTGTCACCTTAGGCTCTTCCTCTTGCTCTGGACTGACTGGGGCGCAAAAGGCTCAGTGTCAACTGGAGCTTGCAAAGACTTCCATGGCTAAAGGGAAACTGAAAATTCTTTAA

Protein sequence

MVALDHIEEPLTEEVGSCNMVLDSVLSSPHRRSPSFRKAFPPNELGSWSTLVQRHRFLLTALVLLTFLCTIYLYFAVTLGSSSCSGLTGAQKAQCQLELAKTSMAKGKLKIL
Homology
BLAST of Carg13495 vs. NCBI nr
Match: KAG7025704.1 (hypothetical protein SDJN02_12202, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 218.0 bits (554), Expect = 4.1e-53
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0

Query: 1   MVALDHIEEPLTEEVGSCNMVLDSVLSSPHRRSPSFRKAFPPNELGSWSTLVQRHRFLLT 60
           MVALDHIEEPLTEEVGSCNMVLDSVLSSPHRRSPSFRKAFPPNELGSWSTLVQRHRFLLT
Sbjct: 1   MVALDHIEEPLTEEVGSCNMVLDSVLSSPHRRSPSFRKAFPPNELGSWSTLVQRHRFLLT 60

Query: 61  ALVLLTFLCTIYLYFAVTLGSSSCSGLTGAQKAQCQLELAKTSMAKGKLKIL 113
           ALVLLTFLCTIYLYFAVTLGSSSCSGLTGAQKAQCQLELAKTSMAKGKLKIL
Sbjct: 61  ALVLLTFLCTIYLYFAVTLGSSSCSGLTGAQKAQCQLELAKTSMAKGKLKIL 112

BLAST of Carg13495 vs. NCBI nr
Match: KAG6593358.1 (hypothetical protein SDJN03_12834, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 198.4 bits (503), Expect = 3.4e-47
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0

Query: 11  LTEEVGSCNMVLDSVLSSPHRRSPSFRKAFPPNELGSWSTLVQRHRFLLTALVLLTFLCT 70
           LTEEVGSCNMVLDSVLSSPHRRSPSFRKAFPPNELGSWSTLVQRHRFLLTALVLLTFLCT
Sbjct: 16  LTEEVGSCNMVLDSVLSSPHRRSPSFRKAFPPNELGSWSTLVQRHRFLLTALVLLTFLCT 75

Query: 71  IYLYFAVTLGSSSCSGLTGAQKAQCQLELAKTSMAKGKLKIL 113
           IYLYFAVTLGSSSCSGLTGAQKAQCQLELAKTSMAKGKLKIL
Sbjct: 76  IYLYFAVTLGSSSCSGLTGAQKAQCQLELAKTSMAKGKLKIL 117

BLAST of Carg13495 vs. NCBI nr
Match: XP_022959742.1 (uncharacterized protein LOC111460722 [Cucurbita moschata] >XP_022959744.1 uncharacterized protein LOC111460722 [Cucurbita moschata] >XP_023515359.1 uncharacterized protein LOC111779417 [Cucurbita pepo subsp. pepo] >XP_023515360.1 uncharacterized protein LOC111779417 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 179.5 bits (454), Expect = 1.6e-41
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0

Query: 20  MVLDSVLSSPHRRSPSFRKAFPPNELGSWSTLVQRHRFLLTALVLLTFLCTIYLYFAVTL 79
           MVLDSVLSSPHRRSPSFRKAFPPNELGSWSTLVQRHRFLLTALVLLTFLCTIYLYFAVTL
Sbjct: 1   MVLDSVLSSPHRRSPSFRKAFPPNELGSWSTLVQRHRFLLTALVLLTFLCTIYLYFAVTL 60

Query: 80  GSSSCSGLTGAQKAQCQLELAKTSMAKGKLKIL 113
           GSSSCSGLTGAQKAQCQLELAKTSMAKGKLKIL
Sbjct: 61  GSSSCSGLTGAQKAQCQLELAKTSMAKGKLKIL 93

BLAST of Carg13495 vs. NCBI nr
Match: XP_023004762.1 (uncharacterized protein LOC111497967 [Cucurbita maxima])

HSP 1 Score: 179.1 bits (453), Expect = 2.1e-41
Identity = 92/93 (98.92%), Postives = 93/93 (100.00%), Query Frame = 0

Query: 20  MVLDSVLSSPHRRSPSFRKAFPPNELGSWSTLVQRHRFLLTALVLLTFLCTIYLYFAVTL 79
           MVLDSVLSSPHRRSPSFRKAFPPNELGSWSTL+QRHRFLLTALVLLTFLCTIYLYFAVTL
Sbjct: 1   MVLDSVLSSPHRRSPSFRKAFPPNELGSWSTLIQRHRFLLTALVLLTFLCTIYLYFAVTL 60

Query: 80  GSSSCSGLTGAQKAQCQLELAKTSMAKGKLKIL 113
           GSSSCSGLTGAQKAQCQLELAKTSMAKGKLKIL
Sbjct: 61  GSSSCSGLTGAQKAQCQLELAKTSMAKGKLKIL 93

BLAST of Carg13495 vs. NCBI nr
Match: KAA0058699.1 (hypothetical protein E6C27_scaffold339G001690 [Cucumis melo var. makuwa] >TYK10505.1 hypothetical protein E5676_scaffold459G001550 [Cucumis melo var. makuwa])

HSP 1 Score: 178.3 bits (451), Expect = 3.6e-41
Identity = 95/103 (92.23%), Postives = 99/103 (96.12%), Query Frame = 0

Query: 11  LTEEVGSCNMVLDSVLSSPHRRSPSFRKAFPPNELGSWSTLVQRHRFLLTALVLLTFLCT 70
           LTEE+GSCNMVLDSVLSSPHRRSPSFRK+F PNELGSWSTL+QRHRFLLTALVLLTFLCT
Sbjct: 18  LTEEIGSCNMVLDSVLSSPHRRSPSFRKSF-PNELGSWSTLMQRHRFLLTALVLLTFLCT 77

Query: 71  IYLYFAVTLG-SSSCSGLTGAQKAQCQLELAKTSMAKGKLKIL 113
           IYLYFAVTLG SSSC GLTG QKAQCQLELAKTS+AKGKLKIL
Sbjct: 78  IYLYFAVTLGSSSSCFGLTGTQKAQCQLELAKTSIAKGKLKIL 119

BLAST of Carg13495 vs. ExPASy TrEMBL
Match: A0A6J1H8Z6 (uncharacterized protein LOC111460722 OS=Cucurbita moschata OX=3662 GN=LOC111460722 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 7.8e-42
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0

Query: 20  MVLDSVLSSPHRRSPSFRKAFPPNELGSWSTLVQRHRFLLTALVLLTFLCTIYLYFAVTL 79
           MVLDSVLSSPHRRSPSFRKAFPPNELGSWSTLVQRHRFLLTALVLLTFLCTIYLYFAVTL
Sbjct: 1   MVLDSVLSSPHRRSPSFRKAFPPNELGSWSTLVQRHRFLLTALVLLTFLCTIYLYFAVTL 60

Query: 80  GSSSCSGLTGAQKAQCQLELAKTSMAKGKLKIL 113
           GSSSCSGLTGAQKAQCQLELAKTSMAKGKLKIL
Sbjct: 61  GSSSCSGLTGAQKAQCQLELAKTSMAKGKLKIL 93

BLAST of Carg13495 vs. ExPASy TrEMBL
Match: A0A6J1KRB5 (uncharacterized protein LOC111497967 OS=Cucurbita maxima OX=3661 GN=LOC111497967 PE=4 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 1.0e-41
Identity = 92/93 (98.92%), Postives = 93/93 (100.00%), Query Frame = 0

Query: 20  MVLDSVLSSPHRRSPSFRKAFPPNELGSWSTLVQRHRFLLTALVLLTFLCTIYLYFAVTL 79
           MVLDSVLSSPHRRSPSFRKAFPPNELGSWSTL+QRHRFLLTALVLLTFLCTIYLYFAVTL
Sbjct: 1   MVLDSVLSSPHRRSPSFRKAFPPNELGSWSTLIQRHRFLLTALVLLTFLCTIYLYFAVTL 60

Query: 80  GSSSCSGLTGAQKAQCQLELAKTSMAKGKLKIL 113
           GSSSCSGLTGAQKAQCQLELAKTSMAKGKLKIL
Sbjct: 61  GSSSCSGLTGAQKAQCQLELAKTSMAKGKLKIL 93

BLAST of Carg13495 vs. ExPASy TrEMBL
Match: A0A5D3CG60 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G001550 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 1.7e-41
Identity = 95/103 (92.23%), Postives = 99/103 (96.12%), Query Frame = 0

Query: 11  LTEEVGSCNMVLDSVLSSPHRRSPSFRKAFPPNELGSWSTLVQRHRFLLTALVLLTFLCT 70
           LTEE+GSCNMVLDSVLSSPHRRSPSFRK+F PNELGSWSTL+QRHRFLLTALVLLTFLCT
Sbjct: 18  LTEEIGSCNMVLDSVLSSPHRRSPSFRKSF-PNELGSWSTLMQRHRFLLTALVLLTFLCT 77

Query: 71  IYLYFAVTLG-SSSCSGLTGAQKAQCQLELAKTSMAKGKLKIL 113
           IYLYFAVTLG SSSC GLTG QKAQCQLELAKTS+AKGKLKIL
Sbjct: 78  IYLYFAVTLGSSSSCFGLTGTQKAQCQLELAKTSIAKGKLKIL 119

BLAST of Carg13495 vs. ExPASy TrEMBL
Match: A0A0A0K6S1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G431400 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 1.1e-40
Identity = 95/103 (92.23%), Postives = 96/103 (93.20%), Query Frame = 0

Query: 11  LTEEVGSCNMVLDSVLSSPHRRSPSFRKAFPPNELGSWSTLVQRHRFLLTALVLLTFLCT 70
           LTEE GSC MVLDSVLSSPHRRSPSFRK+F PNELGSWSTLVQRHRFLLTALVLLTFLCT
Sbjct: 18  LTEEAGSCTMVLDSVLSSPHRRSPSFRKSF-PNELGSWSTLVQRHRFLLTALVLLTFLCT 77

Query: 71  IYLYFAVTLG-SSSCSGLTGAQKAQCQLELAKTSMAKGKLKIL 113
           IYLYFAVTLG SSSC GLTG QKAQC LELAKTSMAKGKLKIL
Sbjct: 78  IYLYFAVTLGSSSSCFGLTGTQKAQCHLELAKTSMAKGKLKIL 119

BLAST of Carg13495 vs. ExPASy TrEMBL
Match: A0A6J1DQE0 (uncharacterized protein LOC111022141 OS=Momordica charantia OX=3673 GN=LOC111022141 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 2.2e-36
Identity = 85/94 (90.43%), Postives = 87/94 (92.55%), Query Frame = 0

Query: 20  MVLDSVLSSPHRRSPSFRKAFPPNELGSWSTLVQRHRFLLTALVLLTFLCTIYLYFAVTL 79
           MVLDSVLSSPHRRSPSFRK FPPNE GSWSTLVQRHRFLLTALVLLTFLCTIYLYFAVTL
Sbjct: 1   MVLDSVLSSPHRRSPSFRKPFPPNEFGSWSTLVQRHRFLLTALVLLTFLCTIYLYFAVTL 60

Query: 80  G-SSSCSGLTGAQKAQCQLELAKTSMAKGKLKIL 113
           G SSSC G+TG QK QC+LELAK SMAKGKLKIL
Sbjct: 61  GSSSSCFGMTGVQKEQCRLELAKASMAKGKLKIL 94

BLAST of Carg13495 vs. TAIR 10
Match: AT1G16170.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G79660.1); Has 55 Blast hits to 55 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 55; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 107.5 bits (267), Expect = 7.3e-24
Identity = 59/93 (63.44%), Postives = 74/93 (79.57%), Query Frame = 0

Query: 20  MVLDSVLSSPHRRSPSFRKAFPPNELGSWSTLVQRHRFLLTALVLLTFLCTIYLYFAVTL 79
           MVLD ++SSP RR    +K +  +ELGSWSTL+QRH++LLTAL LL FLCT+YLYFAVTL
Sbjct: 1   MVLDGLVSSPSRRQQCLKKQW--DELGSWSTLIQRHQYLLTALALLAFLCTVYLYFAVTL 60

Query: 80  GS--SSCSGLTGAQKAQCQLELAKTSMAKGKLK 111
           G+  SSC GLTG  KA CQL+L + +++KGKLK
Sbjct: 61  GARHSSCYGLTGKDKAMCQLQLVQ-ALSKGKLK 90

BLAST of Carg13495 vs. TAIR 10
Match: AT1G79660.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G16170.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 100.5 bits (249), Expect = 8.9e-22
Identity = 55/93 (59.14%), Postives = 71/93 (76.34%), Query Frame = 0

Query: 20  MVLDSVLSSPHRRSPSFRKAFPPNELGSWSTLVQRHRFLLTALVLLTFLCTIYLYFAVTL 79
           MVLD ++SSP RR  + +K +  ++LGS ST+VQRHRFLLTA++LL FLCTIY+YFAVTL
Sbjct: 1   MVLDGIVSSPLRRPHALKKQW--DDLGSCSTVVQRHRFLLTAMLLLAFLCTIYIYFAVTL 60

Query: 80  GSSS--CSGLTGAQKAQCQLELAKTSMAKGKLK 111
           G+    CSG+TG  KA CQ+E  + S + GKLK
Sbjct: 61  GARHLLCSGMTGKDKAMCQMEHIQASFSNGKLK 91

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7025704.14.1e-53100.00hypothetical protein SDJN02_12202, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6593358.13.4e-47100.00hypothetical protein SDJN03_12834, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022959742.11.6e-41100.00uncharacterized protein LOC111460722 [Cucurbita moschata] >XP_022959744.1 unchar... [more]
XP_023004762.12.1e-4198.92uncharacterized protein LOC111497967 [Cucurbita maxima][more]
KAA0058699.13.6e-4192.23hypothetical protein E6C27_scaffold339G001690 [Cucumis melo var. makuwa] >TYK105... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1H8Z67.8e-42100.00uncharacterized protein LOC111460722 OS=Cucurbita moschata OX=3662 GN=LOC1114607... [more]
A0A6J1KRB51.0e-4198.92uncharacterized protein LOC111497967 OS=Cucurbita maxima OX=3661 GN=LOC111497967... [more]
A0A5D3CG601.7e-4192.23Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0K6S11.1e-4092.23Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G431400 PE=4 SV=1[more]
A0A6J1DQE02.2e-3690.43uncharacterized protein LOC111022141 OS=Momordica charantia OX=3673 GN=LOC111022... [more]
Match NameE-valueIdentityDescription
AT1G16170.17.3e-2463.44unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT1G79660.18.9e-2259.14unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34774:SF1EPHRIN-A3 PROTEINcoord: 11..112
NoneNo IPR availablePANTHERPTHR34774EPHRIN-A3 PROTEINcoord: 11..112

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg13495-RACarg13495-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane