Carg13482 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg13482
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Non-specific lipid-transfer protein
Location	Carg_Chr08: 3036163 .. 3036717 (+)
RNA-Seq Expression	Carg13482
Synteny	Carg13482

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATCCCATAAGCTACAAGCCATGGCATCTCTTAAAGTAACCATCGTGTGCATGATGCTATTGCTTCTTCAAGAATCAGAGGCAGCAATCTCATGCAATGACGTGACAAAGGACTTGATGCCATGCGTGAGCTACCTCATGAGCGGCAGTGGGAAGCCGCCAAGCGCATGCTGCGATGGTGCCAAAGCGCTGTCATTGGCAGCCACAAGCAGTGATGACAAGAAGGCTGCATGCGAATGCATCAAATCAGTTGCTGGTAGTGTCAAATACAACGTTAAATTGGCTGAAGATCTTCCTGGAAATTGCGGCATTACACTGCCTTTTAGCATCTCAGCTGGAATTGACTGTTCCAAGTATGAAATTCTATACACTAAAATTGATTTTTTTTTTTTTTTTGAAGAAAGTATTGTTAATTAGCGTTGTTTGTGTTGTTAATTTTCAGGATTAGTTGATTATGAGACAGGAGCTGGCACCATTCTACTATAAACTTGGAGAAATTAGTATATATATATTATGTAATCAAATAAAATAAAAGTAGCTGGAATGGAATCTAATC

mRNA sequence

AATCCCATAAGCTACAAGCCATGGCATCTCTTAAAGTAACCATCGTGTGCATGATGCTATTGCTTCTTCAAGAATCAGAGGCAGCAATCTCATGCAATGACGTGACAAAGGACTTGATGCCATGCGTGAGCTACCTCATGAGCGGCAGTGGGAAGCCGCCAAGCGCATGCTGCGATGGTGCCAAAGCGCTGTCATTGGCAGCCACAAGCAGTGATGACAAGAAGGCTGCATGCGAATGCATCAAATCAGTTGCTGGTAGTGTCAAATACAACGTTAAATTGGCTGAAGATCTTCCTGGAAATTGCGGCATTACACTGCCTTTTAGCATCTCAGCTGGAATTGACTGTTCCAAGATTAGTTGATTATGAGACAGGAGCTGGCACCATTCTACTATAAACTTGGAGAAATTAGTATATATATATTATGTAATCAAATAAAATAAAAGTAGCTGGAATGGAATCTAATC

Coding sequence (CDS)

ATGGCATCTCTTAAAGTAACCATCGTGTGCATGATGCTATTGCTTCTTCAAGAATCAGAGGCAGCAATCTCATGCAATGACGTGACAAAGGACTTGATGCCATGCGTGAGCTACCTCATGAGCGGCAGTGGGAAGCCGCCAAGCGCATGCTGCGATGGTGCCAAAGCGCTGTCATTGGCAGCCACAAGCAGTGATGACAAGAAGGCTGCATGCGAATGCATCAAATCAGTTGCTGGTAGTGTCAAATACAACGTTAAATTGGCTGAAGATCTTCCTGGAAATTGCGGCATTACACTGCCTTTTAGCATCTCAGCTGGAATTGACTGTTCCAAGATTAGTTGA

Protein sequence

MASLKVTIVCMMLLLLQESEAAISCNDVTKDLMPCVSYLMSGSGKPPSACCDGAKALSLAATSSDDKKAACECIKSVAGSVKYNVKLAEDLPGNCGITLPFSISAGIDCSKIS

Homology

[Close]

BLAST of Carg13482 vs. NCBI nr
Match: KAG7025691.1 (Non-specific lipid-transfer protein 8 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 219.9 bits (559), Expect = 1.1e-53
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 1   MASLKVTIVCMMLLLLQESEAAISCNDVTKDLMPCVSYLMSGSGKPPSACCDGAKALSLA 60
           MASLKVTIVCMMLLLLQESEAAISCNDVTKDLMPCVSYLMSGSGKPPSACCDGAKALSLA
Sbjct: 1   MASLKVTIVCMMLLLLQESEAAISCNDVTKDLMPCVSYLMSGSGKPPSACCDGAKALSLA 60

Query: 61  ATSSDDKKAACECIKSVAGSVKYNVKLAEDLPGNCGITLPFSISAGIDCSKIS 114
           ATSSDDKKAACECIKSVAGSVKYNVKLAEDLPGNCGITLPFSISAGIDCSKIS
Sbjct: 61  ATSSDDKKAACECIKSVAGSVKYNVKLAEDLPGNCGITLPFSISAGIDCSKIS 113

[Close]

BLAST of Carg13482 vs. NCBI nr
Match: XP_022959696.1 (non-specific lipid-transfer protein 8-like [Cucurbita moschata] >KAG6593344.1 Non-specific lipid-transfer protein 8, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 218.4 bits (555), Expect = 3.2e-53
Identity = 112/113 (99.12%), Postives = 112/113 (99.12%), Query Frame = 0


Query: 1   MASLKVTIVCMMLLLLQESEAAISCNDVTKDLMPCVSYLMSGSGKPPSACCDGAKALSLA 60
           MASLKVTIVCMMLLLLQESEAAISCNDVTKDLMPCVSYLMSGSGKPPSACCDGAKALSLA
Sbjct: 1   MASLKVTIVCMMLLLLQESEAAISCNDVTKDLMPCVSYLMSGSGKPPSACCDGAKALSLA 60

Query: 61  ATSSDDKKAACECIKSVAGSVKYNVKLAEDLPGNCGITLPFSISAGIDCSKIS 114
           ATSSDDKKAACECIKSVAGSVKYN KLAEDLPGNCGITLPFSISAGIDCSKIS
Sbjct: 61  ATSSDDKKAACECIKSVAGSVKYNAKLAEDLPGNCGITLPFSISAGIDCSKIS 113

[Close]

BLAST of Carg13482 vs. NCBI nr
Match: XP_023004354.1 (non-specific lipid-transfer protein 8-like [Cucurbita maxima])

HSP 1 Score: 208.4 bits (529), Expect = 3.3e-50
Identity = 107/113 (94.69%), Postives = 110/113 (97.35%), Query Frame = 0


Query: 1   MASLKVTIVCMMLLLLQESEAAISCNDVTKDLMPCVSYLMSGSGKPPSACCDGAKALSLA 60
           MASLKVT+  MMLLLLQESEAAISCNDVTK+LMPCVSYLMSGSGKPPSACCDGAKALSLA
Sbjct: 1   MASLKVTMAFMMLLLLQESEAAISCNDVTKNLMPCVSYLMSGSGKPPSACCDGAKALSLA 60

Query: 61  ATSSDDKKAACECIKSVAGSVKYNVKLAEDLPGNCGITLPFSISAGIDCSKIS 114
           ATSSDDKKAACECIKSVAG+VKYN KLAEDLPGNCGITLPFSISAGIDCSKIS
Sbjct: 61  ATSSDDKKAACECIKSVAGNVKYNAKLAEDLPGNCGITLPFSISAGIDCSKIS 113

[Close]

BLAST of Carg13482 vs. NCBI nr
Match: XP_023514955.1 (non-specific lipid-transfer protein 8-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 208.0 bits (528), Expect = 4.3e-50
Identity = 107/113 (94.69%), Postives = 109/113 (96.46%), Query Frame = 0


Query: 1   MASLKVTIVCMMLLLLQESEAAISCNDVTKDLMPCVSYLMSGSGKPPSACCDGAKALSLA 60
           MASLKVTI  MMLLLLQESEAAISCNDVTKDL PCVSYLMSGSGKPPSACCDGAKALSLA
Sbjct: 1   MASLKVTIAFMMLLLLQESEAAISCNDVTKDLTPCVSYLMSGSGKPPSACCDGAKALSLA 60

Query: 61  ATSSDDKKAACECIKSVAGSVKYNVKLAEDLPGNCGITLPFSISAGIDCSKIS 114
           ATSSDDKKAAC+CIKSVAG+VKYN KLAEDLPGNCGITLPFSISAGIDCSKIS
Sbjct: 61  ATSSDDKKAACQCIKSVAGNVKYNAKLAEDLPGNCGITLPFSISAGIDCSKIS 113

[Close]

BLAST of Carg13482 vs. NCBI nr
Match: XP_004135897.1 (non-specific lipid-transfer protein 8 [Cucumis sativus] >KGN45185.1 hypothetical protein Csa_015613 [Cucumis sativus])

HSP 1 Score: 172.6 bits (436), Expect = 2.0e-39
Identity = 86/106 (81.13%), Postives = 95/106 (89.62%), Query Frame = 0


Query: 8   IVCMMLLLLQESEAAISCNDVTKDLMPCVSYLMSGSGKPPSACCDGAKALSLAATSSDDK 67
           ++  + LLLQ S+A ISC+DVTKDLMPCVSYLMSGSGKPPSACCDGAKALS AATSS DK
Sbjct: 14  VLLFVFLLLQVSKATISCSDVTKDLMPCVSYLMSGSGKPPSACCDGAKALSSAATSSADK 73

Query: 68  KAACECIKSVAGSVKYNVKLAEDLPGNCGITLPFSISAGIDCSKIS 114
           KAACECIKS A +V YNVKLA+DLP NCGI+LPFSISAGIDCSKI+
Sbjct: 74  KAACECIKSAASNVNYNVKLAQDLPSNCGISLPFSISAGIDCSKIN 119

[Close]

BLAST of Carg13482 vs. ExPASy Swiss-Prot
Match: Q9ZPW9 (Non-specific lipid-transfer protein 8 OS=Arabidopsis thaliana OX=3702 GN=LTP8 PE=3 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 2.5e-24
Identity = 57/109 (52.29%), Postives = 74/109 (67.89%), Query Frame = 0


Query: 4   LKVTIVCMMLLLLQESEAAISCNDVTKDLMPCVSYLMSGSGKPPSACCDGAKALSLAATS 63
           L +  V  +  + + SE+AISC+ V +DL PCVSYL SGSG PP  CCDG K+L+ A T+
Sbjct: 7   LAIISVLGIFFIPRYSESAISCSVVLQDLQPCVSYLTSGSGNPPETCCDGVKSLAAATTT 66

Query: 64  SDDKKAACECIKSVAGSVKYNVKLAEDLPGNCGITLPFSISAGIDCSKI 113
           S DKKAAC+CIKSVA SV    +LA+ L  NCG +LP   S  +DC+ +
Sbjct: 67  SADKKAACQCIKSVANSVTVKPELAQALASNCGASLPVDASPTVDCTTV 115

[Close]

BLAST of Carg13482 vs. ExPASy Swiss-Prot
Match: Q43767 (Non-specific lipid-transfer protein 4.1 OS=Hordeum vulgare OX=4513 GN=LTP4.1 PE=1 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.5e-21
Identity = 53/111 (47.75%), Postives = 73/111 (65.77%), Query Frame = 0


Query: 2   ASLKVTIVCMMLLLLQESEAAISCNDVTKDLMPCVSYLMSGSGKPPSACCDGAKALSLAA 61
           AS  V +  +  +LL  ++AAISC  V+  L PC+SY      KPP+ACC G K L+ AA
Sbjct: 6   ASQLVLVALVAAMLLVAADAAISCGQVSSALSPCISYARGNGAKPPAACCSGVKRLAGAA 65

Query: 62  TSSDDKKAACECIKSVAGSVKYNVKLAEDLPGNCGITLPFSISAGIDCSKI 113
            S+ DK+AAC+CIKS AG +  N   A  +P  CG+++P++ISA +DCSKI
Sbjct: 66  QSTADKQAACKCIKSAAGGL--NAGKAAGIPSMCGVSVPYAISASVDCSKI 114

[Close]

BLAST of Carg13482 vs. ExPASy Swiss-Prot
Match: Q42842 (Non-specific lipid-transfer protein 4.3 OS=Hordeum vulgare OX=4513 GN=LTP4.3 PE=2 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 7.4e-21
Identity = 52/111 (46.85%), Postives = 72/111 (64.86%), Query Frame = 0


Query: 2   ASLKVTIVCMMLLLLQESEAAISCNDVTKDLMPCVSYLMSGSGKPPSACCDGAKALSLAA 61
           A+  V +  +  +LL  ++AAISC  V+  L PC+SY      KPP ACC G K L+ AA
Sbjct: 6   ATQLVLVAMVAAMLLVATDAAISCGQVSSALSPCISYARGNGAKPPVACCSGVKRLAGAA 65

Query: 62  TSSDDKKAACECIKSVAGSVKYNVKLAEDLPGNCGITLPFSISAGIDCSKI 113
            S+ DK+AAC+CIKS AG +  N   A  +P  CG+++P++ISA +DCSKI
Sbjct: 66  QSTADKQAACKCIKSAAGGL--NAGKAAGIPSMCGVSVPYAISASVDCSKI 114

[Close]

BLAST of Carg13482 vs. ExPASy Swiss-Prot
Match: Q43875 (Non-specific lipid-transfer protein 4.2 OS=Hordeum vulgare OX=4513 GN=LTP4.2 PE=2 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.3e-20
Identity = 51/111 (45.95%), Postives = 72/111 (64.86%), Query Frame = 0


Query: 2   ASLKVTIVCMMLLLLQESEAAISCNDVTKDLMPCVSYLMSGSGKPPSACCDGAKALSLAA 61
           A+  V +  +  +L+  ++AAISC  V+  L PC+SY      KPP ACC G K L+ AA
Sbjct: 6   ATQLVLVAMVAAMLIVATDAAISCGQVSSALSPCISYARGNGAKPPVACCSGVKRLAGAA 65

Query: 62  TSSDDKKAACECIKSVAGSVKYNVKLAEDLPGNCGITLPFSISAGIDCSKI 113
            S+ DK+AAC+CIKS AG +  N   A  +P  CG+++P++ISA +DCSKI
Sbjct: 66  QSTADKQAACKCIKSAAGGL--NAGKAAGIPSMCGVSVPYAISASVDCSKI 114

[Close]

BLAST of Carg13482 vs. ExPASy Swiss-Prot
Match: Q43766 (Non-specific lipid-transfer protein 3 OS=Hordeum vulgare OX=4513 GN=LTP3 PE=3 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 2.8e-20
Identity = 50/112 (44.64%), Postives = 71/112 (63.39%), Query Frame = 0


Query: 2   ASLKVTIVCMMLLLLQESEAAISCNDVTKDLMPCVSYLMSGSGKPPSACCDGAKALSLAA 61
           A+  V +  +  +LL  ++AAISC  V+  L PC+SY      KPP ACC G K L+ AA
Sbjct: 6   ATQLVLVAMVAAMLLVATDAAISCGQVSSALSPCISYARGNGAKPPVACCSGVKRLAGAA 65

Query: 62  TSSDDKKAACECIKSVAGSVK-YNVKLAEDLPGNCGITLPFSISAGIDCSKI 113
            S+ DK+AAC C+KS+A S+K  N+     +PG CG+++PF IS   DC+K+
Sbjct: 66  QSTADKQAACRCLKSLATSIKGINMGKVSGVPGKCGVSVPFPISMSTDCNKV 117

[Close]

BLAST of Carg13482 vs. ExPASy TrEMBL
Match: A0A6J1H5K9 (Non-specific lipid-transfer protein OS=Cucurbita moschata OX=3662 GN=LOC111460693 PE=3 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 1.5e-53
Identity = 112/113 (99.12%), Postives = 112/113 (99.12%), Query Frame = 0


Query: 1   MASLKVTIVCMMLLLLQESEAAISCNDVTKDLMPCVSYLMSGSGKPPSACCDGAKALSLA 60
           MASLKVTIVCMMLLLLQESEAAISCNDVTKDLMPCVSYLMSGSGKPPSACCDGAKALSLA
Sbjct: 1   MASLKVTIVCMMLLLLQESEAAISCNDVTKDLMPCVSYLMSGSGKPPSACCDGAKALSLA 60

Query: 61  ATSSDDKKAACECIKSVAGSVKYNVKLAEDLPGNCGITLPFSISAGIDCSKIS 114
           ATSSDDKKAACECIKSVAGSVKYN KLAEDLPGNCGITLPFSISAGIDCSKIS
Sbjct: 61  ATSSDDKKAACECIKSVAGSVKYNAKLAEDLPGNCGITLPFSISAGIDCSKIS 113

[Close]

BLAST of Carg13482 vs. ExPASy TrEMBL
Match: A0A6J1KW15 (Non-specific lipid-transfer protein OS=Cucurbita maxima OX=3661 GN=LOC111497697 PE=3 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 1.6e-50
Identity = 107/113 (94.69%), Postives = 110/113 (97.35%), Query Frame = 0


Query: 1   MASLKVTIVCMMLLLLQESEAAISCNDVTKDLMPCVSYLMSGSGKPPSACCDGAKALSLA 60
           MASLKVT+  MMLLLLQESEAAISCNDVTK+LMPCVSYLMSGSGKPPSACCDGAKALSLA
Sbjct: 1   MASLKVTMAFMMLLLLQESEAAISCNDVTKNLMPCVSYLMSGSGKPPSACCDGAKALSLA 60

Query: 61  ATSSDDKKAACECIKSVAGSVKYNVKLAEDLPGNCGITLPFSISAGIDCSKIS 114
           ATSSDDKKAACECIKSVAG+VKYN KLAEDLPGNCGITLPFSISAGIDCSKIS
Sbjct: 61  ATSSDDKKAACECIKSVAGNVKYNAKLAEDLPGNCGITLPFSISAGIDCSKIS 113

[Close]

BLAST of Carg13482 vs. ExPASy TrEMBL
Match: A0A0A0K657 (Non-specific lipid-transfer protein OS=Cucumis sativus OX=3659 GN=Csa_7G430200 PE=3 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 9.7e-40
Identity = 86/106 (81.13%), Postives = 95/106 (89.62%), Query Frame = 0


Query: 8   IVCMMLLLLQESEAAISCNDVTKDLMPCVSYLMSGSGKPPSACCDGAKALSLAATSSDDK 67
           ++  + LLLQ S+A ISC+DVTKDLMPCVSYLMSGSGKPPSACCDGAKALS AATSS DK
Sbjct: 14  VLLFVFLLLQVSKATISCSDVTKDLMPCVSYLMSGSGKPPSACCDGAKALSSAATSSADK 73

Query: 68  KAACECIKSVAGSVKYNVKLAEDLPGNCGITLPFSISAGIDCSKIS 114
           KAACECIKS A +V YNVKLA+DLP NCGI+LPFSISAGIDCSKI+
Sbjct: 74  KAACECIKSAASNVNYNVKLAQDLPSNCGISLPFSISAGIDCSKIN 119

[Close]

BLAST of Carg13482 vs. ExPASy TrEMBL
Match: A0A1S3CEM4 (Non-specific lipid-transfer protein OS=Cucumis melo OX=3656 GN=LOC103499873 PE=3 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 9.1e-38
Identity = 83/106 (78.30%), Postives = 92/106 (86.79%), Query Frame = 0


Query: 8   IVCMMLLLLQESEAAISCNDVTKDLMPCVSYLMSGSGKPPSACCDGAKALSLAATSSDDK 67
           I+  + LLL  S+A ISC+DVTKDLMPCVSYL+SGSGKPPSACCDGAKALS AATS  DK
Sbjct: 10  ILLFVFLLLGVSKATISCSDVTKDLMPCVSYLVSGSGKPPSACCDGAKALSSAATSGADK 69

Query: 68  KAACECIKSVAGSVKYNVKLAEDLPGNCGITLPFSISAGIDCSKIS 114
           KAAC+CIKS A +V YN KLA+DLP NCGITLPFSISAGIDCSKI+
Sbjct: 70  KAACQCIKSAASNVNYNAKLAQDLPSNCGITLPFSISAGIDCSKIN 115

[Close]

BLAST of Carg13482 vs. ExPASy TrEMBL
Match: A0A5A7UYN6 (Non-specific lipid-transfer protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G001310 PE=3 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 3.4e-37
Identity = 82/104 (78.85%), Postives = 90/104 (86.54%), Query Frame = 0


Query: 8   IVCMMLLLLQESEAAISCNDVTKDLMPCVSYLMSGSGKPPSACCDGAKALSLAATSSDDK 67
           I+  + LLL  S+A ISC+DVTKDLMPCVSYL+SGSGKPPSACCDGAKALS AATS  DK
Sbjct: 10  ILLFVFLLLGVSKATISCSDVTKDLMPCVSYLVSGSGKPPSACCDGAKALSSAATSGADK 69

Query: 68  KAACECIKSVAGSVKYNVKLAEDLPGNCGITLPFSISAGIDCSK 112
           KAAC+CIKS A +V YN KLA+DLP NCGITLPFSISAGIDCSK
Sbjct: 70  KAACQCIKSAASNVNYNAKLAQDLPSNCGITLPFSISAGIDCSK 113

[Close]

BLAST of Carg13482 vs. TAIR 10
Match: AT2G18370.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein )

HSP 1 Score: 112.8 bits (281), Expect = 1.7e-25
Identity = 57/109 (52.29%), Postives = 74/109 (67.89%), Query Frame = 0


Query: 4   LKVTIVCMMLLLLQESEAAISCNDVTKDLMPCVSYLMSGSGKPPSACCDGAKALSLAATS 63
           L +  V  +  + + SE+AISC+ V +DL PCVSYL SGSG PP  CCDG K+L+ A T+
Sbjct: 7   LAIISVLGIFFIPRYSESAISCSVVLQDLQPCVSYLTSGSGNPPETCCDGVKSLAAATTT 66

Query: 64  SDDKKAACECIKSVAGSVKYNVKLAEDLPGNCGITLPFSISAGIDCSKI 113
           S DKKAAC+CIKSVA SV    +LA+ L  NCG +LP   S  +DC+ +
Sbjct: 67  SADKKAACQCIKSVANSVTVKPELAQALASNCGASLPVDASPTVDCTTV 115

[Close]

BLAST of Carg13482 vs. TAIR 10
Match: AT5G01870.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein )

HSP 1 Score: 91.3 bits (225), Expect = 5.5e-19
Identity = 50/109 (45.87%), Postives = 68/109 (62.39%), Query Frame = 0


Query: 9   VCMML--LLLQESEAAISCNDVTKDLMPCVSYLMSGSGKPPSACCDGAKALSLAATSSDD 68
           +C++L  +    SEAAISCN V  +L PCV Y++ G G  P +CC+G + LS  ATS+ D
Sbjct: 8   LCLLLASIFAWGSEAAISCNAVQANLYPCVVYVVQG-GAIPYSCCNGIRMLSKQATSASD 67

Query: 69  KKAACECIKSVAGSVKYN---VKLAEDLPGNCGITLPFSISAGIDCSKI 113
           K+  C CIKSV G V Y+   +K A  LPG CG+ LP+ I    +C+ I
Sbjct: 68  KQGVCRCIKSVVGRVSYSSIYLKKAAALPGKCGVKLPYKIDPSTNCNSI 115

[Close]

BLAST of Carg13482 vs. TAIR 10
Match: AT5G59320.1 (lipid transfer protein 3 )

HSP 1 Score: 82.0 bits (201), Expect = 3.3e-16
Identity = 43/107 (40.19%), Postives = 63/107 (58.88%), Query Frame = 0


Query: 7   TIVCMMLLLLQESEAAISCNDVTKDLMPCVSYLMSGSGKPPSACCDGAKALSLAATSSDD 66
           T + + + ++   +AAISC  V   L PC +YL  G   PPS CC G K L+  A ++ D
Sbjct: 9   TCLVLTVCIVASVDAAISCGTVAGSLAPCATYLSKGGLVPPS-CCAGVKTLNSMAKTTPD 68

Query: 67  KKAACECIKSVAGSVK-YNVKLAEDLPGNCGITLPFSISAGIDCSKI 113
           ++ AC CI+S A S+   N  LA  LPG CG+++P+ IS   +C+ I
Sbjct: 69  RQQACRCIQSTAKSISGLNPSLASGLPGKCGVSIPYPISMSTNCNNI 114

[Close]

BLAST of Carg13482 vs. TAIR 10
Match: AT3G08770.1 (lipid transfer protein 6 )

HSP 1 Score: 80.9 bits (198), Expect = 7.4e-16
Identity = 44/107 (41.12%), Postives = 61/107 (57.01%), Query Frame = 0


Query: 9   VCMMLLLLQESEAAISCNDVTKDLMPCVSYLMSGSGKPPSACCDGAKALSLAATSSDDKK 68
           VC ++L L   EAA+SCN V  DL PC+SY+  G G  P+ CC+G   L   A +S D++
Sbjct: 8   VC-LVLALHCGEAAVSCNTVIADLYPCLSYVTQG-GPVPTLCCNGLTTLKSQAQTSVDRQ 67

Query: 69  AACECIKSVAGSVKYN---VKLAEDLPGNCGITLPFSISAGIDCSKI 113
             C CIKS  G +  +   ++ A +LP  CG+ LP+  S   DC  I
Sbjct: 68  GVCRCIKSAIGGLTLSPRTIQNALELPSKCGVDLPYKFSPSTDCDSI 112

[Close]

BLAST of Carg13482 vs. TAIR 10
Match: AT3G08770.2 (lipid transfer protein 6 )

HSP 1 Score: 79.0 bits (193), Expect = 2.8e-15
Identity = 43/104 (41.35%), Postives = 60/104 (57.69%), Query Frame = 0


Query: 9   VCMMLLLLQESEAAISCNDVTKDLMPCVSYLMSGSGKPPSACCDGAKALSLAATSSDDKK 68
           VC ++L L   EAA+SCN V  DL PC+SY+  G G  P+ CC+G   L   A +S D++
Sbjct: 8   VC-LVLALHCGEAAVSCNTVIADLYPCLSYVTQG-GPVPTLCCNGLTTLKSQAQTSVDRQ 67

Query: 69  AACECIKSVAGSVKYN---VKLAEDLPGNCGITLPFSISAGIDC 110
             C CIKS  G +  +   ++ A +LP  CG+ LP+  S   DC
Sbjct: 68  GVCRCIKSAIGGLTLSPRTIQNALELPSKCGVDLPYKFSPSTDC 109

The following BLAST results are available for this feature:

BLAST of Carg13482 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7025691.1	1.1e-53	100.00	Non-specific lipid-transfer protein 8 [Cucurbita argyrosperma subsp. argyrosperm...	[more]
XP_022959696.1	3.2e-53	99.12	non-specific lipid-transfer protein 8-like [Cucurbita moschata] >KAG6593344.1 No...	[more]
XP_023004354.1	3.3e-50	94.69	non-specific lipid-transfer protein 8-like [Cucurbita maxima]	[more]
XP_023514955.1	4.3e-50	94.69	non-specific lipid-transfer protein 8-like [Cucurbita pepo subsp. pepo]	[more]
XP_004135897.1	2.0e-39	81.13	non-specific lipid-transfer protein 8 [Cucumis sativus] >KGN45185.1 hypothetical...	[more]

BLAST of Carg13482 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZPW9	2.5e-24	52.29	Non-specific lipid-transfer protein 8 OS=Arabidopsis thaliana OX=3702 GN=LTP8 PE...	[more]
Q43767	1.5e-21	47.75	Non-specific lipid-transfer protein 4.1 OS=Hordeum vulgare OX=4513 GN=LTP4.1 PE=...	[more]
Q42842	7.4e-21	46.85	Non-specific lipid-transfer protein 4.3 OS=Hordeum vulgare OX=4513 GN=LTP4.3 PE=...	[more]
Q43875	1.3e-20	45.95	Non-specific lipid-transfer protein 4.2 OS=Hordeum vulgare OX=4513 GN=LTP4.2 PE=...	[more]
Q43766	2.8e-20	44.64	Non-specific lipid-transfer protein 3 OS=Hordeum vulgare OX=4513 GN=LTP3 PE=3 SV...	[more]

BLAST of Carg13482 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H5K9	1.5e-53	99.12	Non-specific lipid-transfer protein OS=Cucurbita moschata OX=3662 GN=LOC11146069...	[more]
A0A6J1KW15	1.6e-50	94.69	Non-specific lipid-transfer protein OS=Cucurbita maxima OX=3661 GN=LOC111497697 ...	[more]
A0A0A0K657	9.7e-40	81.13	Non-specific lipid-transfer protein OS=Cucumis sativus OX=3659 GN=Csa_7G430200 P...	[more]
A0A1S3CEM4	9.1e-38	78.30	Non-specific lipid-transfer protein OS=Cucumis melo OX=3656 GN=LOC103499873 PE=3...	[more]
A0A5A7UYN6	3.4e-37	78.85	Non-specific lipid-transfer protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]

BLAST of Carg13482 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G18370.1	1.7e-25	52.29	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil...	[more]
AT5G01870.1	5.5e-19	45.87	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil...	[more]
AT5G59320.1	3.3e-16	40.19	lipid transfer protein 3	[more]
AT3G08770.1	7.4e-16	41.12	lipid transfer protein 6	[more]
AT3G08770.2	2.8e-15	41.35	lipid transfer protein 6	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000528	Plant non-specific lipid-transfer protein/Par allergen	PRINTS	PR00382	LIPIDTRNSFER	coord: 100..111 score: 44.74 coord: 82..99 score: 31.62 coord: 45..59 score: 39.38 coord: 24..40 score: 40.45 coord: 66..81 score: 45.67
IPR000528	Plant non-specific lipid-transfer protein/Par allergen	PANTHER	PTHR33076	FAMILY NOT NAMED	coord: 6..112
IPR000528	Plant non-specific lipid-transfer protein/Par allergen	PROSITE	PS00597	PLANT_LTP	coord: 91..112
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	SMART	SM00499	aai_6	coord: 25..109 e-value: 3.1E-8 score: 43.4
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	PFAM	PF00234	Tryp_alpha_amyl	coord: 25..109 e-value: 2.3E-8 score: 34.4
IPR036312	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain superfamily	GENE3D	1.10.110.10		coord: 22..113 e-value: 3.3E-28 score: 99.9
IPR036312	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain superfamily	SUPERFAMILY	47699	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin	coord: 22..112
None	No IPR available	PANTHER	PTHR33076:SF62	NON-SPECIFIC LIPID-TRANSFER PROTEIN 8	coord: 6..112
None	No IPR available	CDD	cd01960	nsLTP1	coord: 23..110 e-value: 4.15438E-30 score: 101.272

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg13482-RA	Carg13482-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006869	lipid transport
molecular_function	GO:0008289	lipid binding