Carg13474 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg13474
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	CCR4-NOT transcription complex subunit like
Location	Carg_Chr08: 3001453 .. 3003111 (-)
RNA-Seq Expression	Carg13474
Synteny	Carg13474

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAGATAATAAAATAGAATATTCTTCCAAGTAGATAACAAAAATAGACGTGAATTATGAATGGATCATCCACACCCTCCGTGCCGCATCTCGTGCGAATCTCCTCTTCCGAAGTTGACGAAGTCGTTGTAACAAGACTGAAGGTGAATGGCTTCCGTCTTCGCCGCGCCGCCGTCTCAAGTGGATCTCTCTTCTCACCGCCCAAGTTTGGATCACAAAGCCTTTCTTCCTTCCATCGTCGGCGTTAAATTTCATCGGAATGGCTTTCCAATTCCTTCTTTCAGGTATCCGTAGTTTAATCACTCCTCTTCGATCCCTCGCATTCGACTTATTTGATCTCTGTAGATTTCAGGTCTGTTGTATATTTTTAATGAGACTAGTGATCGCTTTAGTAATGAAGTTCATCTGTTAGTTCTGTGAAGTAGTTCGACTTTGACCCTTTTGTTGATATTTGATAATGGAATCTGGCAGGTTGTTGCTAATTCCTAATTGTTTTTTGCTACTAACGCCAGGTGCTTATAAACTAGTATTATATTTTGTTTTTCGGAATTTTTATTAGTTTTCGTGTTCAGCAGTCCTCTACGATCCCTCGCATTAGACACAATTATTCCAGAAGATATCTGTACTGTTACCCTTGCAATGAGCATGTTAACAATTAAGTTCATCTGTTGCTTAGTTCTGTAAAGTGAATCCACCTTGATTCTTGTGATGGAAATGGAATTTGGCAGGTAGTAAAACACTGAATCTTAATTGGTTTTCGCTATGCTACTCCCGCAAGGAACTTATACTAGCATTAGGATCTTGGCTTTATTTTTCTGGTTTTCTTCCAATTCCAAGTTGAAACAGGATGAATCTTTGATTTGATACTTTCTGGCTTCCGGATGCGCCTGGGGAAAGTTTATTAGTTCTTTCTGAAAGCTCTCCTCTGATTGTGAAGTAGTTACATTTAAGATTGCCAGAAAATGATAATTCTGGAATGGCCTCTATAATTTCTTTGAAAAACATAGACCTTTTGGATGAATCACAGCTGTTGGAGGAACCACAGTAATAATAAATGGTTTAAATCTCTACAACAATTAATTGAATTCTATCATCTTCTCAAGTTGTCAGTTGGCTCAACAATTAATTTGGAGTTTCCTCTTTAAAATCTTCTGGAAGTATTGGTGCAAATACTGTTTCCTACCATTCATGGTTCGATCTTTATGGTATTTTGTCTGTTTAGACTTTCATTTACTTCAACTCTTTCCTCACAAAGACATGATATACTTATATAAAGCTAAATCAGTAGCTGAGATCCTCCTTGCATCTGCTAGTCAGATTTGCCAGAAATTAGAACACACCTAATCTGAGATGACTGATACTTGTAATCACAATATTGCTACTCAGCTGAGTGGTTGTGTGATTTCTTTTATGCAGGTACAAGAACACCAAAGGATTGGAATTGAGGCAAAGATCTTTTTCTATAACAGCATCAAATTCCTCAGATGGGAATTCCACCAAGGAGAAAAATGATGGAAGTAAAGTAACAAGTGATGCCCAAGGTCCTCCATTTCTTACCATTTTGGCTGGATTTTTTGTCTTTTCCCTCGTCCTTTGGATAGTCAGTTCCTCTGTCACAACCCTTATAGCTCTAGTCGTCAAGTTGATCTCAACAAAGTAA

mRNA sequence

AAAGATAATAAAATAGAATATTCTTCCAAGTAGATAACAAAAATAGACGTGAATTATGAATGGATCATCCACACCCTCCGTGCCGCATCTCGTGCGAATCTCCTCTTCCGAAGTTGACGAAGTCGTTGTAACAAGACTGAAGGTGAATGGCTTCCGTCTTCGCCGCGCCGCCGTCTCAAGTGGATCTCTCTTCTCACCGCCCAAGTTTGGATCACAAAGCCTTTCTTCCTTCCATCGTCGGCGTTAAATTTCATCGGAATGGCTTTCCAATTCCTTCTTTCAGGTACAAGAACACCAAAGGATTGGAATTGAGGCAAAGATCTTTTTCTATAACAGCATCAAATTCCTCAGATGGGAATTCCACCAAGGAGAAAAATGATGGAAGTAAAGTAACAAGTGATGCCCAAGGTCCTCCATTTCTTACCATTTTGGCTGGATTTTTTGTCTTTTCCCTCGTCCTTTGGATAGTCAGTTCCTCTGTCACAACCCTTATAGCTCTAGTCGTCAAGTTGATCTCAACAAAGTAA

Coding sequence (CDS)

ATGGCTTCCGTCTTCGCCGCGCCGCCGTCTCAAGTGGATCTCTCTTCTCACCGCCCAAGTTTGGATCACAAAGCCTTTCTTCCTTCCATCGTCGGCGTTAAATTTCATCGGAATGGCTTTCCAATTCCTTCTTTCAGGTACAAGAACACCAAAGGATTGGAATTGAGGCAAAGATCTTTTTCTATAACAGCATCAAATTCCTCAGATGGGAATTCCACCAAGGAGAAAAATGATGGAAGTAAAGTAACAAGTGATGCCCAAGGTCCTCCATTTCTTACCATTTTGGCTGGATTTTTTGTCTTTTCCCTCGTCCTTTGGATAGTCAGTTCCTCTGTCACAACCCTTATAGCTCTAGTCGTCAAGTTGATCTCAACAAAGTAA

Protein sequence

MASVFAAPPSQVDLSSHRPSLDHKAFLPSIVGVKFHRNGFPIPSFRYKNTKGLELRQRSFSITASNSSDGNSTKEKNDGSKVTSDAQGPPFLTILAGFFVFSLVLWIVSSSVTTLIALVVKLISTK

Homology

[Close]

BLAST of Carg13474 vs. NCBI nr
Match: KAG7025683.1 (hypothetical protein SDJN02_12181 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 237.7 bits (605), Expect = 5.6e-59
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0


Query: 1   MASVFAAPPSQVDLSSHRPSLDHKAFLPSIVGVKFHRNGFPIPSFRYKNTKGLELRQRSF 60
           MASVFAAPPSQVDLSSHRPSLDHKAFLPSIVGVKFHRNGFPIPSFRYKNTKGLELRQRSF
Sbjct: 1   MASVFAAPPSQVDLSSHRPSLDHKAFLPSIVGVKFHRNGFPIPSFRYKNTKGLELRQRSF 60

Query: 61  SITASNSSDGNSTKEKNDGSKVTSDAQGPPFLTILAGFFVFSLVLWIVSSSVTTLIALVV 120
           SITASNSSDGNSTKEKNDGSKVTSDAQGPPFLTILAGFFVFSLVLWIVSSSVTTLIALVV
Sbjct: 61  SITASNSSDGNSTKEKNDGSKVTSDAQGPPFLTILAGFFVFSLVLWIVSSSVTTLIALVV 120

Query: 121 KLISTK 127
           KLISTK
Sbjct: 121 KLISTK 126

[Close]

BLAST of Carg13474 vs. NCBI nr
Match: KAG6593336.1 (hypothetical protein SDJN03_12812, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 236.1 bits (601), Expect = 1.6e-58
Identity = 125/126 (99.21%), Postives = 125/126 (99.21%), Query Frame = 0


Query: 1   MASVFAAPPSQVDLSSHRPSLDHKAFLPSIVGVKFHRNGFPIPSFRYKNTKGLELRQRSF 60
           MASVFAAPPSQVDLSSHRPSLDHKAFLPSIVGVKFHRNGFPIPSFRYKNTKGLELRQRSF
Sbjct: 1   MASVFAAPPSQVDLSSHRPSLDHKAFLPSIVGVKFHRNGFPIPSFRYKNTKGLELRQRSF 60

Query: 61  SITASNSSDGNSTKEKNDGSKVTSDAQGPPFLTILAGFFVFSLVLWIVSSSVTTLIALVV 120
           SITASNSSDGNSTKEKNDGSKVT DAQGPPFLTILAGFFVFSLVLWIVSSSVTTLIALVV
Sbjct: 61  SITASNSSDGNSTKEKNDGSKVTGDAQGPPFLTILAGFFVFSLVLWIVSSSVTTLIALVV 120

Query: 121 KLISTK 127
           KLISTK
Sbjct: 121 KLISTK 126

[Close]

BLAST of Carg13474 vs. NCBI nr
Match: XP_022959607.1 (uncharacterized protein LOC111460632 [Cucurbita moschata])

HSP 1 Score: 228.4 bits (581), Expect = 3.4e-56
Identity = 121/126 (96.03%), Postives = 123/126 (97.62%), Query Frame = 0


Query: 1   MASVFAAPPSQVDLSSHRPSLDHKAFLPSIVGVKFHRNGFPIPSFRYKNTKGLELRQRSF 60
           MASVFAAPPSQ+ LSSHRPSLDHKAFLPSIVGVKFHRNGFPIPSFRYKNTKGL+LRQRSF
Sbjct: 1   MASVFAAPPSQLVLSSHRPSLDHKAFLPSIVGVKFHRNGFPIPSFRYKNTKGLKLRQRSF 60

Query: 61  SITASNSSDGNSTKEKNDGSKVTSDAQGPPFLTILAGFFVFSLVLWIVSSSVTTLIALVV 120
           SITASNSSDGNSTKEKNDGSKVT DAQGPPFLTILAGFFVFSLVLWIVSSSVTTLIAL V
Sbjct: 61  SITASNSSDGNSTKEKNDGSKVTGDAQGPPFLTILAGFFVFSLVLWIVSSSVTTLIALAV 120

Query: 121 KLISTK 127
           KLISTK
Sbjct: 121 KLISTK 126

[Close]

BLAST of Carg13474 vs. NCBI nr
Match: XP_023004845.1 (uncharacterized protein LOC111498025 [Cucurbita maxima])

HSP 1 Score: 228.4 bits (581), Expect = 3.4e-56
Identity = 121/126 (96.03%), Postives = 124/126 (98.41%), Query Frame = 0


Query: 1   MASVFAAPPSQVDLSSHRPSLDHKAFLPSIVGVKFHRNGFPIPSFRYKNTKGLELRQRSF 60
           MASVFAAPPSQ+ LSSHRPSLDHKAFLPSIVGVKFHRNGFPIPSFRYKNTKGL+LRQRSF
Sbjct: 1   MASVFAAPPSQLVLSSHRPSLDHKAFLPSIVGVKFHRNGFPIPSFRYKNTKGLKLRQRSF 60

Query: 61  SITASNSSDGNSTKEKNDGSKVTSDAQGPPFLTILAGFFVFSLVLWIVSSSVTTLIALVV 120
           SITASNSSDGNSTKE+NDGSKVT DAQGPPFLTILAGFFVFSLVLWIVSSSVTTLIALVV
Sbjct: 61  SITASNSSDGNSTKEENDGSKVTGDAQGPPFLTILAGFFVFSLVLWIVSSSVTTLIALVV 120

Query: 121 KLISTK 127
           KLISTK
Sbjct: 121 KLISTK 126

[Close]

BLAST of Carg13474 vs. NCBI nr
Match: XP_023513743.1 (uncharacterized protein LOC111778262 isoform X3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 224.6 bits (571), Expect = 4.9e-55
Identity = 120/126 (95.24%), Postives = 122/126 (96.83%), Query Frame = 0


Query: 1   MASVFAAPPSQVDLSSHRPSLDHKAFLPSIVGVKFHRNGFPIPSFRYKNTKGLELRQRSF 60
           MASVFAAPPSQ+ LSSHRPSLDHKAFLPSIVGVKFHRNGFPIPSFRYKNTK L+LRQRSF
Sbjct: 1   MASVFAAPPSQLVLSSHRPSLDHKAFLPSIVGVKFHRNGFPIPSFRYKNTKRLKLRQRSF 60

Query: 61  SITASNSSDGNSTKEKNDGSKVTSDAQGPPFLTILAGFFVFSLVLWIVSSSVTTLIALVV 120
           SITASNSSDGNSTKEK DGSKVT DAQGPPFLTILAGFFVFSLVLWIVSSSVTTLIALVV
Sbjct: 61  SITASNSSDGNSTKEKKDGSKVTGDAQGPPFLTILAGFFVFSLVLWIVSSSVTTLIALVV 120

Query: 121 KLISTK 127
           KLISTK
Sbjct: 121 KLISTK 126

[Close]

BLAST of Carg13474 vs. ExPASy TrEMBL
Match: A0A6J1KVQ7 (uncharacterized protein LOC111498025 OS=Cucurbita maxima OX=3661 GN=LOC111498025 PE=4 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 1.7e-56
Identity = 121/126 (96.03%), Postives = 124/126 (98.41%), Query Frame = 0


Query: 1   MASVFAAPPSQVDLSSHRPSLDHKAFLPSIVGVKFHRNGFPIPSFRYKNTKGLELRQRSF 60
           MASVFAAPPSQ+ LSSHRPSLDHKAFLPSIVGVKFHRNGFPIPSFRYKNTKGL+LRQRSF
Sbjct: 1   MASVFAAPPSQLVLSSHRPSLDHKAFLPSIVGVKFHRNGFPIPSFRYKNTKGLKLRQRSF 60

Query: 61  SITASNSSDGNSTKEKNDGSKVTSDAQGPPFLTILAGFFVFSLVLWIVSSSVTTLIALVV 120
           SITASNSSDGNSTKE+NDGSKVT DAQGPPFLTILAGFFVFSLVLWIVSSSVTTLIALVV
Sbjct: 61  SITASNSSDGNSTKEENDGSKVTGDAQGPPFLTILAGFFVFSLVLWIVSSSVTTLIALVV 120

Query: 121 KLISTK 127
           KLISTK
Sbjct: 121 KLISTK 126

[Close]

BLAST of Carg13474 vs. ExPASy TrEMBL
Match: A0A6J1H506 (uncharacterized protein LOC111460632 OS=Cucurbita moschata OX=3662 GN=LOC111460632 PE=4 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 1.7e-56
Identity = 121/126 (96.03%), Postives = 123/126 (97.62%), Query Frame = 0


Query: 1   MASVFAAPPSQVDLSSHRPSLDHKAFLPSIVGVKFHRNGFPIPSFRYKNTKGLELRQRSF 60
           MASVFAAPPSQ+ LSSHRPSLDHKAFLPSIVGVKFHRNGFPIPSFRYKNTKGL+LRQRSF
Sbjct: 1   MASVFAAPPSQLVLSSHRPSLDHKAFLPSIVGVKFHRNGFPIPSFRYKNTKGLKLRQRSF 60

Query: 61  SITASNSSDGNSTKEKNDGSKVTSDAQGPPFLTILAGFFVFSLVLWIVSSSVTTLIALVV 120
           SITASNSSDGNSTKEKNDGSKVT DAQGPPFLTILAGFFVFSLVLWIVSSSVTTLIAL V
Sbjct: 61  SITASNSSDGNSTKEKNDGSKVTGDAQGPPFLTILAGFFVFSLVLWIVSSSVTTLIALAV 120

Query: 121 KLISTK 127
           KLISTK
Sbjct: 121 KLISTK 126

[Close]

BLAST of Carg13474 vs. ExPASy TrEMBL
Match: A0A6J1GPL5 (uncharacterized protein LOC111455984 OS=Cucurbita moschata OX=3662 GN=LOC111455984 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 1.7e-40
Identity = 95/127 (74.80%), Postives = 112/127 (88.19%), Query Frame = 0


Query: 1   MASVFAAPPSQVDLSSHRPSLDHKAFLP-SIVGVKFHRNGFPIPSFRYKNTKGLELRQRS 60
           MAS+F+APPS+++L+S RPSL H A LP SI G+++H N FPIPSFRY+NTKGLELRQRS
Sbjct: 1   MASIFSAPPSRLNLTS-RPSLIHGAVLPSSIAGIQYHSNAFPIPSFRYRNTKGLELRQRS 60

Query: 61  FSITASNSSDGNSTKEKNDGSKVTSDAQGPPFLTILAGFFVFSLVLWIVSSSVTTLIALV 120
           FSITASNSSDGNS KE+N  SK +SDAQGPPFLTILAG FVFSL+LW++SS+ T+LI LV
Sbjct: 61  FSITASNSSDGNSIKEENGSSKASSDAQGPPFLTILAGIFVFSLLLWMLSSAATSLIGLV 120

Query: 121 VKLISTK 127
           VKLISTK
Sbjct: 121 VKLISTK 126

[Close]

BLAST of Carg13474 vs. ExPASy TrEMBL
Match: A0A6J1JUC2 (uncharacterized protein LOC111488436 OS=Cucurbita maxima OX=3661 GN=LOC111488436 PE=4 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 2.0e-38
Identity = 92/126 (73.02%), Postives = 109/126 (86.51%), Query Frame = 0


Query: 1   MASVFAAPPSQVDLSSHRPSLDHKAFLP-SIVGVKFHRNGFPIPSFRYKNTKGLELRQRS 60
           MAS+FAAPPS+++L+S RPSL H A LP SI G+++H N FPIPSFRY+NTKGLEL  RS
Sbjct: 1   MASIFAAPPSRLNLTS-RPSLIHGAVLPSSIAGIQYHSNAFPIPSFRYRNTKGLELSPRS 60

Query: 61  FSITASNSSDGNSTKEKNDGSKVTSDAQGPPFLTILAGFFVFSLVLWIVSSSVTTLIALV 120
           FSITASNSSDGNS +E+N  SK +SDAQGPPFLTILAG FVFSL+LW++SS+ T+LI LV
Sbjct: 61  FSITASNSSDGNSIEEENGSSKASSDAQGPPFLTILAGIFVFSLLLWMLSSAATSLIGLV 120

Query: 121 VKLIST 126
           VKLIST
Sbjct: 121 VKLIST 125

[Close]

BLAST of Carg13474 vs. ExPASy TrEMBL
Match: A0A6J1CV15 (uncharacterized protein LOC111015032 OS=Momordica charantia OX=3673 GN=LOC111015032 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 7.7e-38
Identity = 88/126 (69.84%), Postives = 105/126 (83.33%), Query Frame = 0


Query: 1   MASVFAAPPSQVDLSSHRPSLDHKAFLPSIVGVKFHRNGFPIPSFRYKNTKGLELRQRSF 60
           MAS+FAAPPSQ++L S R S + +A LPSIVGVK H +GFP+PSFR+++TKGLEL QRSF
Sbjct: 1   MASIFAAPPSQLNLCSRRSSSNRRALLPSIVGVKLHSSGFPVPSFRFRHTKGLELSQRSF 60

Query: 61  SITASNSSDGNSTKEKNDGSKVTSDAQGPPFLTILAGFFVFSLVLWIVSSSVTTLIALVV 120
           SITASNSSDGNS KE     + T DAQGPPFLTILAGFFVFSL++W++SS+ T+LI LVV
Sbjct: 61  SITASNSSDGNSIKE-----EATGDAQGPPFLTILAGFFVFSLIIWMISSAFTSLIGLVV 120

Query: 121 KLISTK 127
           KLI  K
Sbjct: 121 KLIPAK 121

The following BLAST results are available for this feature:

BLAST of Carg13474 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7025683.1	5.6e-59	100.00	hypothetical protein SDJN02_12181 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6593336.1	1.6e-58	99.21	hypothetical protein SDJN03_12812, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022959607.1	3.4e-56	96.03	uncharacterized protein LOC111460632 [Cucurbita moschata]	[more]
XP_023004845.1	3.4e-56	96.03	uncharacterized protein LOC111498025 [Cucurbita maxima]	[more]
XP_023513743.1	4.9e-55	95.24	uncharacterized protein LOC111778262 isoform X3 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg13474 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg13474 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KVQ7	1.7e-56	96.03	uncharacterized protein LOC111498025 OS=Cucurbita maxima OX=3661 GN=LOC111498025...	[more]
A0A6J1H506	1.7e-56	96.03	uncharacterized protein LOC111460632 OS=Cucurbita moschata OX=3662 GN=LOC1114606...	[more]
A0A6J1GPL5	1.7e-40	74.80	uncharacterized protein LOC111455984 OS=Cucurbita moschata OX=3662 GN=LOC1114559...	[more]
A0A6J1JUC2	2.0e-38	73.02	uncharacterized protein LOC111488436 OS=Cucurbita maxima OX=3661 GN=LOC111488436...	[more]
A0A6J1CV15	7.7e-38	69.84	uncharacterized protein LOC111015032 OS=Momordica charantia OX=3673 GN=LOC111015...	[more]

BLAST of Carg13474 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 61..84

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg13474-RA	Carg13474-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane