Carg13463 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg13463
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	30S ribosomal protein 2, chloroplastic-like
Location	Carg_Chr08: 2948442 .. 2951399 (+)
RNA-Seq Expression	Carg13463
Synteny	Carg13463

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTCTTGTCGCTTCGGAACGCAAAGCTTTACAGACCAAAAATGGCTTCCATCTCTGCCGTGTTATCGCCAACGAATCTCATCCACAGTTCCACAAAACCCGCCGAAATCCTTCTCAAATCAGTCTCATTTCACCGCCGTCATACCCATACCCTCCTCCGCCTATCTCCCGGTCGCCCCACGAGACTCTTCGCGGCGCTTACTGCTCAGGATTCCAGTTCAGTGGCGGAAAGGAAATTGTACGTTGGAAATATACCTAGAAATGTGGATAATGAGGAGCTCAAGCGGATTGTTGAACAACATGGGGCTGTGGAGAAGGCTGAGGTGCGTAATTTATGATTGATTATTTATTATTATTTTTTTTTCTTCTATTGTACATTTTGAAATTTGTTGCGTACCCTACGCGTCGAGATGTTGATGTTGAGGTTTGCTTGCTGGATTCTATTATTGAGGACTTATATCTATCTGCTTGATTAGTTTGTCTTCAACGAATCTTCGCATGAATTGATTTGAGTTAATTGTTCATAAGTTAAGTTCATCGAAACTTCTTCCTGAATGTACCCTGATTTTGGCATGATTTAATCGAGTTAATTGTTTATAAGTTGAGTTCATCAAAACATCTGCCTGAACGTACCCTGATTTTGGGCCAAATTTGTCCACCATATACTTTCAAATGGAGTTTACTTGCAGAGTGTTATCCAATCCACGAAGGAATTAAAGATGGAAAATGTTCATAGGAGAGGGAAGGAAGAGTTCATAGGAAGGGAAAGGATAGTCACGCTCTGTTAGTTACAATAAGCTGCAGCCACTTATCAAAGGGAAGAAGGATGTACAGGACGATTTTAGGGGAAAGGAGAATCGAATCCTGTGAAATGCTCGCCACTGGCTCATAGAAATTCCATAGGACTTCAAAATTTAATTCTTGCTGCTTTCGGGTTCATTGCTTCAGTGTCGTTGCGTTTGTATGAGAGTATCTAAGATGAGTACCAAACAGTTCCTGAAATGAAGTAGCTAATGGCATGTCTTTAATGATGTATTTCTTGCAATCAATTTACTTGAAGAATTCTAGCATCTTCTTGTTCTTAATCTTTACTTGCTAACTGTTGGTATTGGCTTTAAAACTCCAATTTTGTTCCATTTCCAGGTCATGTATGACAAATACTCTGGAAGAAGCCGCAGGTTTGCCTTTGTTACCATGAAAACGGTTGACGACGCAAATGCAGCAATTGAGAAACTGAATGAGACAGTAAGCTAAATACCTATCAAGTGCAACAAAAATCGAAAAAGAACAAGAACAAAACAATTGTTTCTTACTGCTCACTAGAATCTAGATAGATGAATTGTGCTGATTCTATCGGTCTAATGACAGGACGTTGGGGGACGTACAATTAAAGTCAATATAACCGAAAAACCTGTGGTAAATACGGTTGATATGTCACTTCTTGAGGCAGAGGAATCCCAATTCATCGACAGTCCCCACAAAGTATATGTAGGAAACATTTCGAGTACTGTCTCTACTGAAACACTCAAAAACTTCTTCTCTGAGAAGGGTAAAGTTCTCAGTGCAAAGGTTTCACGGGTTCCCGGTACATCGAAAGCAAGTGGCTACGGTTTTGTTACCTTTTCTTCCGAGGAGGAAGTCGAAGCTGCCATTTCATCTTTTAACAATGCTGTAAGTAACTCGCTTCCATTCTCTATCATGTCGAACGTTGTAACATCAATACTGATTTATGCAAACTCTATCTCACTTTCTGGTCGGGTTTCATGCATTGGCAACATTTTTGCTCACATTGTCTAGTAGAGCATTCCTTGTTTCATTTTCTGTTTCCCTAAACAATTACATATAGAGTAGCATTCTGATCACCCACTTGTAAGAAGCATTTCTAAACCTAGTCGATTGGTATGCCAACTCGAACAACTTACATTGATCATCGATATTACTAATAGTTGGACAAGCTATGTTCATCAAAGATGATGGCATACTTCCCTGAAAACTCTCATGCACATTTCTCGTTTCCGAACGGGTGGAAGAAGCTTGTGTCTGATATGTGTTTTCCTTTGCTGCAGTTGTTGGAAGGTCAACCAATTCGTGTAAACAAGGCATAATTTTGTAGGATTCTTTGTAACAAAAGGTATGCAAATTTCGCTTTTTACCTCTTGGCATGAATTAATGAACAGCAGAGGTCAGATTTTTCTCTCAATTTCTCTGTATTGATCATTAATGTATAATCTTGTTTATTTTTCTGTTTAAGATTTGACTATTTGCAAATCTTTACTTGTTCCTCAAATTCCACGTTTGACTACTCAACTATTTGCAGTCCTCATGTGCACTATAAATACATCATCTTTTCAAAGGAATTACTCATTTCTCAAATTCTCAGTTCCTCTCAAAACCCAGAAAACAATGATGCTCTCTCTTCTCTCAGCTTTCATAGATTGCTTCCTTCCTTCTCTCTCCCCAAAGGCTTCCCATGGCGGAAGAACAAGTAAACCCCAAACTCAAACAACAGCCTCCAAACTGACACCTGAAGCTGATTCGCAGCTCCCTCAAGCTCCTATAATCGTGTCTCATTTCCCAGTTTCTGCAAACTTATCTTGCTTGTGATTTCCTTGATGAACTCTGGTCTTCAATGGACTCCTCTTGGATCGAATCTGAAAAAGATGAAGTTTTGTCTTTGATCATGTTGTCTCTCGAGTTCAGTCATGGGTGTTTGTAGAACTAGTTTCTTTCTTGTTCCAGCTCTGGTTTTGATTCTTTTTTTCCTTTTTGGAGATTAATATACAACGTTTTTCTTGTAATTTCTTGGTTTCTTCGATGGGTATTGACTTTTCTATCTCATGTTTGTAATGGGTCTTGATTAAAATGTTAAAATACTCCAAATAGCCTTTTATATTTACTACTTTTTTAAGATGGGTCTTTTAGTAGCATAAGGTCAAAGACACTTGAAATAATTGCTCTC

mRNA sequence

GTTCTTGTCGCTTCGGAACGCAAAGCTTTACAGACCAAAAATGGCTTCCATCTCTGCCGTGTTATCGCCAACGAATCTCATCCACAGTTCCACAAAACCCGCCGAAATCCTTCTCAAATCAGTCTCATTTCACCGCCGTCATACCCATACCCTCCTCCGCCTATCTCCCGGTCGCCCCACGAGACTCTTCGCGGCGCTTACTGCTCAGGATTCCAGTTCAGTGGCGGAAAGGAAATTGTACGTTGGAAATATACCTAGAAATGTGGATAATGAGGAGCTCAAGCGGATTGTTGAACAACATGGGGCTGTGGAGAAGGCTGAGGTCATGTATGACAAATACTCTGGAAGAAGCCGCAGGTTTGCCTTTGTTACCATGAAAACGGTTGACGACGCAAATGCAGCAATTGAGAAACTGAATGAGACAGACGTTGGGGGACGTACAATTAAAGTCAATATAACCGAAAAACCTGTGGTAAATACGGTTGATATGTCACTTCTTGAGGCAGAGGAATCCCAATTCATCGACAGTCCCCACAAAGTATATGTAGGAAACATTTCGAGTACTGTCTCTACTGAAACACTCAAAAACTTCTTCTCTGAGAAGGGTAAAGTTCTCAGTGCAAAGGTTTCACGGGTTCCCGGTACATCGAAAGCAAGTGGCTACGGTTTTGTTACCTTTTCTTCCGAGGAGGAAGTCGAAGCTGCCATTTCATCTTTTAACAATGCTTTGTTGGAAGGTCAACCAATTCGTGTAAACAAGGCATAATTTTGTAGGATTCTTTGTAACAAAAGGTATGCAAATTTCGCTTTTTACCTCTTGGCATGAATTAATGAACAGCAGAGGTCAGATTTTTCTCTCAATTTCTCTGTATTGATCATTAATGTATAATCTTGTTTATTTTTCTGTTTAAGATTTGACTATTTGCAAATCTTTACTTGTTCCTCAAATTCCACGTTTGACTACTCAACTATTTGCAGTCCTCATGTGCACTATAAATACATCATCTTTTCAAAGGAATTACTCATTTCTCAAATTCTCAGTTCCTCTCAAAACCCAGAAAACAATGATGCTCTCTCTTCTCTCAGCTTTCATAGATTGCTTCCTTCCTTCTCTCTCCCCAAAGGCTTCCCATGGCGGAAGAACAAGTAAACCCCAAACTCAAACAACAGCCTCCAAACTGACACCTGAAGCTGATTCGCAGCTCCCTCAAGCTCCTATAATCGTGTCTCATTTCCCAGTTTCTGCAAACTTATCTTGCTTGTGATTTCCTTGATGAACTCTGGTCTTCAATGGACTCCTCTTGGATCGAATCTGAAAAAGATGAAGTTTTGTCTTTGATCATGTTGTCTCTCGAGTTCAGTCATGGGTGTTTGTAGAACTAGTTTCTTTCTTGTTCCAGCTCTGGTTTTGATTCTTTTTTTCCTTTTTGGAGATTAATATACAACGTTTTTCTTGTAATTTCTTGGTTTCTTCGATGGGTATTGACTTTTCTATCTCATGTTTGTAATGGGTCTTGATTAAAATGTTAAAATACTCCAAATAGCCTTTTATATTTACTACTTTTTTAAGATGGGTCTTTTAGTAGCATAAGGTCAAAGACACTTGAAATAATTGCTCTC

Coding sequence (CDS)

ATGGCTTCCATCTCTGCCGTGTTATCGCCAACGAATCTCATCCACAGTTCCACAAAACCCGCCGAAATCCTTCTCAAATCAGTCTCATTTCACCGCCGTCATACCCATACCCTCCTCCGCCTATCTCCCGGTCGCCCCACGAGACTCTTCGCGGCGCTTACTGCTCAGGATTCCAGTTCAGTGGCGGAAAGGAAATTGTACGTTGGAAATATACCTAGAAATGTGGATAATGAGGAGCTCAAGCGGATTGTTGAACAACATGGGGCTGTGGAGAAGGCTGAGGTCATGTATGACAAATACTCTGGAAGAAGCCGCAGGTTTGCCTTTGTTACCATGAAAACGGTTGACGACGCAAATGCAGCAATTGAGAAACTGAATGAGACAGACGTTGGGGGACGTACAATTAAAGTCAATATAACCGAAAAACCTGTGGTAAATACGGTTGATATGTCACTTCTTGAGGCAGAGGAATCCCAATTCATCGACAGTCCCCACAAAGTATATGTAGGAAACATTTCGAGTACTGTCTCTACTGAAACACTCAAAAACTTCTTCTCTGAGAAGGGTAAAGTTCTCAGTGCAAAGGTTTCACGGGTTCCCGGTACATCGAAAGCAAGTGGCTACGGTTTTGTTACCTTTTCTTCCGAGGAGGAAGTCGAAGCTGCCATTTCATCTTTTAACAATGCTTTGTTGGAAGGTCAACCAATTCGTGTAAACAAGGCATAA

Protein sequence

MASISAVLSPTNLIHSSTKPAEILLKSVSFHRRHTHTLLRLSPGRPTRLFAALTAQDSSSVAERKLYVGNIPRNVDNEELKRIVEQHGAVEKAEVMYDKYSGRSRRFAFVTMKTVDDANAAIEKLNETDVGGRTIKVNITEKPVVNTVDMSLLEAEESQFIDSPHKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKASGYGFVTFSSEEEVEAAISSFNNALLEGQPIRVNKA

Homology

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BLAST of Carg13463 vs. NCBI nr
Match: KAG7025672.1 (30S ribosomal protein 2, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 454.9 bits (1169), Expect = 4.3e-124
Identity = 241/241 (100.00%), Postives = 241/241 (100.00%), Query Frame = 0


Query: 1   MASISAVLSPTNLIHSSTKPAEILLKSVSFHRRHTHTLLRLSPGRPTRLFAALTAQDSSS 60
           MASISAVLSPTNLIHSSTKPAEILLKSVSFHRRHTHTLLRLSPGRPTRLFAALTAQDSSS
Sbjct: 1   MASISAVLSPTNLIHSSTKPAEILLKSVSFHRRHTHTLLRLSPGRPTRLFAALTAQDSSS 60

Query: 61  VAERKLYVGNIPRNVDNEELKRIVEQHGAVEKAEVMYDKYSGRSRRFAFVTMKTVDDANA 120
           VAERKLYVGNIPRNVDNEELKRIVEQHGAVEKAEVMYDKYSGRSRRFAFVTMKTVDDANA
Sbjct: 61  VAERKLYVGNIPRNVDNEELKRIVEQHGAVEKAEVMYDKYSGRSRRFAFVTMKTVDDANA 120

Query: 121 AIEKLNETDVGGRTIKVNITEKPVVNTVDMSLLEAEESQFIDSPHKVYVGNISSTVSTET 180
           AIEKLNETDVGGRTIKVNITEKPVVNTVDMSLLEAEESQFIDSPHKVYVGNISSTVSTET
Sbjct: 121 AIEKLNETDVGGRTIKVNITEKPVVNTVDMSLLEAEESQFIDSPHKVYVGNISSTVSTET 180

Query: 181 LKNFFSEKGKVLSAKVSRVPGTSKASGYGFVTFSSEEEVEAAISSFNNALLEGQPIRVNK 240
           LKNFFSEKGKVLSAKVSRVPGTSKASGYGFVTFSSEEEVEAAISSFNNALLEGQPIRVNK
Sbjct: 181 LKNFFSEKGKVLSAKVSRVPGTSKASGYGFVTFSSEEEVEAAISSFNNALLEGQPIRVNK 240

Query: 241 A 242
           A
Sbjct: 241 A 241

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BLAST of Carg13463 vs. NCBI nr
Match: XP_022959724.1 (30S ribosomal protein 2, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 451.8 bits (1161), Expect = 3.6e-123
Identity = 240/241 (99.59%), Postives = 240/241 (99.59%), Query Frame = 0


Query: 1   MASISAVLSPTNLIHSSTKPAEILLKSVSFHRRHTHTLLRLSPGRPTRLFAALTAQDSSS 60
           MASISAVLSPTNLIHSSTKPAEILLKSVSFHRR THTLLRLSPGRPTRLFAALTAQDSSS
Sbjct: 1   MASISAVLSPTNLIHSSTKPAEILLKSVSFHRRRTHTLLRLSPGRPTRLFAALTAQDSSS 60

Query: 61  VAERKLYVGNIPRNVDNEELKRIVEQHGAVEKAEVMYDKYSGRSRRFAFVTMKTVDDANA 120
           VAERKLYVGNIPRNVDNEELKRIVEQHGAVEKAEVMYDKYSGRSRRFAFVTMKTVDDANA
Sbjct: 61  VAERKLYVGNIPRNVDNEELKRIVEQHGAVEKAEVMYDKYSGRSRRFAFVTMKTVDDANA 120

Query: 121 AIEKLNETDVGGRTIKVNITEKPVVNTVDMSLLEAEESQFIDSPHKVYVGNISSTVSTET 180
           AIEKLNETDVGGRTIKVNITEKPVVNTVDMSLLEAEESQFIDSPHKVYVGNISSTVSTET
Sbjct: 121 AIEKLNETDVGGRTIKVNITEKPVVNTVDMSLLEAEESQFIDSPHKVYVGNISSTVSTET 180

Query: 181 LKNFFSEKGKVLSAKVSRVPGTSKASGYGFVTFSSEEEVEAAISSFNNALLEGQPIRVNK 240
           LKNFFSEKGKVLSAKVSRVPGTSKASGYGFVTFSSEEEVEAAISSFNNALLEGQPIRVNK
Sbjct: 181 LKNFFSEKGKVLSAKVSRVPGTSKASGYGFVTFSSEEEVEAAISSFNNALLEGQPIRVNK 240

Query: 241 A 242
           A
Sbjct: 241 A 241

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BLAST of Carg13463 vs. NCBI nr
Match: KAG6593325.1 (30S ribosomal protein 2, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 450.3 bits (1157), Expect = 1.1e-122
Identity = 238/238 (100.00%), Postives = 238/238 (100.00%), Query Frame = 0


Query: 4   ISAVLSPTNLIHSSTKPAEILLKSVSFHRRHTHTLLRLSPGRPTRLFAALTAQDSSSVAE 63
           ISAVLSPTNLIHSSTKPAEILLKSVSFHRRHTHTLLRLSPGRPTRLFAALTAQDSSSVAE
Sbjct: 25  ISAVLSPTNLIHSSTKPAEILLKSVSFHRRHTHTLLRLSPGRPTRLFAALTAQDSSSVAE 84

Query: 64  RKLYVGNIPRNVDNEELKRIVEQHGAVEKAEVMYDKYSGRSRRFAFVTMKTVDDANAAIE 123
           RKLYVGNIPRNVDNEELKRIVEQHGAVEKAEVMYDKYSGRSRRFAFVTMKTVDDANAAIE
Sbjct: 85  RKLYVGNIPRNVDNEELKRIVEQHGAVEKAEVMYDKYSGRSRRFAFVTMKTVDDANAAIE 144

Query: 124 KLNETDVGGRTIKVNITEKPVVNTVDMSLLEAEESQFIDSPHKVYVGNISSTVSTETLKN 183
           KLNETDVGGRTIKVNITEKPVVNTVDMSLLEAEESQFIDSPHKVYVGNISSTVSTETLKN
Sbjct: 145 KLNETDVGGRTIKVNITEKPVVNTVDMSLLEAEESQFIDSPHKVYVGNISSTVSTETLKN 204

Query: 184 FFSEKGKVLSAKVSRVPGTSKASGYGFVTFSSEEEVEAAISSFNNALLEGQPIRVNKA 242
           FFSEKGKVLSAKVSRVPGTSKASGYGFVTFSSEEEVEAAISSFNNALLEGQPIRVNKA
Sbjct: 205 FFSEKGKVLSAKVSRVPGTSKASGYGFVTFSSEEEVEAAISSFNNALLEGQPIRVNKA 262

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BLAST of Carg13463 vs. NCBI nr
Match: XP_023513630.1 (30S ribosomal protein 2, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 444.5 bits (1142), Expect = 5.8e-121
Identity = 236/241 (97.93%), Postives = 237/241 (98.34%), Query Frame = 0


Query: 1   MASISAVLSPTNLIHSSTKPAEILLKSVSFHRRHTHTLLRLSPGRPTRLFAALTAQDSSS 60
           MASISAVLSPTNLIHSS KPAEILL SVSFHRR THT LRLSPGRPTRLFAALTAQDSSS
Sbjct: 1   MASISAVLSPTNLIHSSIKPAEILLTSVSFHRRRTHTFLRLSPGRPTRLFAALTAQDSSS 60

Query: 61  VAERKLYVGNIPRNVDNEELKRIVEQHGAVEKAEVMYDKYSGRSRRFAFVTMKTVDDANA 120
           VAERKLYVGNIPRNVDNEELKRIVE+HGAVEKAEVMYDKYSGRSRRFAFVTMKTVDDANA
Sbjct: 61  VAERKLYVGNIPRNVDNEELKRIVEEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVDDANA 120

Query: 121 AIEKLNETDVGGRTIKVNITEKPVVNTVDMSLLEAEESQFIDSPHKVYVGNISSTVSTET 180
           AIEKLNETDVGGRTIKVNITEKPVVNTVDMSLLEAEESQFIDSPHKVYVGNISSTVSTET
Sbjct: 121 AIEKLNETDVGGRTIKVNITEKPVVNTVDMSLLEAEESQFIDSPHKVYVGNISSTVSTET 180

Query: 181 LKNFFSEKGKVLSAKVSRVPGTSKASGYGFVTFSSEEEVEAAISSFNNALLEGQPIRVNK 240
           LKNFFSEKGKVLSAKVSRVPGTSKASGYGFVTFSSEEEVEAAISSFNNALLEGQPIRVNK
Sbjct: 181 LKNFFSEKGKVLSAKVSRVPGTSKASGYGFVTFSSEEEVEAAISSFNNALLEGQPIRVNK 240

Query: 241 A 242
           A
Sbjct: 241 A 241

[Close]

BLAST of Carg13463 vs. NCBI nr
Match: XP_023004641.1 (30S ribosomal protein 2, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 441.4 bits (1134), Expect = 4.9e-120
Identity = 235/241 (97.51%), Postives = 236/241 (97.93%), Query Frame = 0


Query: 1   MASISAVLSPTNLIHSSTKPAEILLKSVSFHRRHTHTLLRLSPGRPTRLFAALTAQDSSS 60
           MASISAVLSPTNLIHSSTKPAEILLKSVSFHRR THTLLRLSPGRP+RLFAALTAQDSSS
Sbjct: 1   MASISAVLSPTNLIHSSTKPAEILLKSVSFHRRRTHTLLRLSPGRPSRLFAALTAQDSSS 60

Query: 61  VAERKLYVGNIPRNVDNEELKRIVEQHGAVEKAEVMYDKYSGRSRRFAFVTMKTVDDANA 120
           VAERKLYVGNIPRNVDNEEL RIVEQHGAVEKAEVMYDKYSGRSRRFAFVTMKTVDDANA
Sbjct: 61  VAERKLYVGNIPRNVDNEELTRIVEQHGAVEKAEVMYDKYSGRSRRFAFVTMKTVDDANA 120

Query: 121 AIEKLNETDVGGRTIKVNITEKPVVNTVDMSLLEAEESQFIDSPHKVYVGNISSTVSTET 180
           AIEKLNETDVGGRTIKVNITEKPVVN VDMSLLEAEESQFIDSPHKVYVGNISSTVSTET
Sbjct: 121 AIEKLNETDVGGRTIKVNITEKPVVNMVDMSLLEAEESQFIDSPHKVYVGNISSTVSTET 180

Query: 181 LKNFFSEKGKVLSAKVSRVPGTSKASGYGFVTFSSEEEVEAAISSFNNALLEGQPIRVNK 240
           LKNFFSEK KVLSAKVSRVPGTSKASGYGFVTFSSEEEVEAAISSFNN LLEGQPIRVNK
Sbjct: 181 LKNFFSEKDKVLSAKVSRVPGTSKASGYGFVTFSSEEEVEAAISSFNNVLLEGQPIRVNK 240

Query: 241 A 242
           A
Sbjct: 241 A 241

[Close]

BLAST of Carg13463 vs. ExPASy Swiss-Prot
Match: Q8VYM4 (30S ribosomal protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSRP2 PE=2 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 1.6e-68
Identity = 129/187 (68.98%), Postives = 161/187 (86.10%), Query Frame = 0


Query: 55  AQDSSSVAERKLYVGNIPRNVDNEELKRIVEQHGAVEKAEVMYDKYSGRSRRFAFVTMKT 114
           A D SS A R++Y+GNIPR V NE+L ++VE+HGAVEK +VMYDKYSGRSRRF F TMK+
Sbjct: 67  ALDPSSEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKS 126

Query: 115 VDDANAAIEKLNETDVGGRTIKVNITEKPVVNTVDMSLLEAEESQFIDSPHKVYVGNISS 174
           V+DANA +EKLN   V GR IKVNITEKP+ ++ D+S+L++E+S F+DSP+KVYVGN++ 
Sbjct: 127 VEDANAVVEKLNGNTVEGREIKVNITEKPIASSPDLSVLQSEDSAFVDSPYKVYVGNLAK 186

Query: 175 TVSTETLKNFFSEKGKVLSAKVSRVPGTSKASGYGFVTFSSEEEVEAAISSFNNALLEGQ 234
           TV+ E L+N FSEKGKV+SAKVSRVPGTSK++G+GFVTFSSEE+VEAAI + NN+LLEGQ
Sbjct: 187 TVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLLEGQ 246

Query: 235 PIRVNKA 242
            IRVNKA
Sbjct: 247 KIRVNKA 253

[Close]

BLAST of Carg13463 vs. ExPASy Swiss-Prot
Match: P82277 (30S ribosomal protein 2, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSRP2 PE=1 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 3.5e-68
Identity = 147/261 (56.32%), Postives = 194/261 (74.33%), Query Frame = 0


Query: 1   MASISAVLSPTNLIH------SSTKP---AEILLKSVSFHRRHTHTL-LRLSPGRPTRLF 60
           MA+IS++L    L+       SS+KP   ++ L++  SF       L  R+S   P    
Sbjct: 1   MATISSILPCHGLLQHCSSSSSSSKPKFSSQNLVQLQSFSNGFGLKLKTRVSTNPPLLKV 60

Query: 61  AALTAQDSSSVA----------ERKLYVGNIPRNVDNEELKRIVEQHGAVEKAEVMYDKY 120
            A+  +++SS +           R+LYVGNIPRN++N+EL+ IVE+HGA+E AEVMYDKY
Sbjct: 61  RAVVTEETSSSSTASSSSDGEGARRLYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKY 120

Query: 121 SGRSRRFAFVTMKTVDDANAAIEKLNETDVGGRTIKVNITEKPVVNTVDMSLLEAEESQF 180
           SGRSRRF FVTMKTV+DANA IEKLN+T++GGR IKVNITEKP +  +D++  +AE+SQF
Sbjct: 121 SGRSRRFGFVTMKTVEDANAVIEKLNDTEIGGRKIKVNITEKP-LEGMDIATTQAEDSQF 180

Query: 181 IDSPHKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKASGYGFVTFSSEEEVE 240
           ++SP+KVY+GN++ TV+ E LK+FFSEKGKVL AKV R PGTSK++G+GFV+FSSEEEVE
Sbjct: 181 VESPYKVYIGNLAKTVTNELLKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVE 240

Query: 241 AAISSFNNALLEGQPIRVNKA 242
           AAI + NN++LEGQ IRVNKA
Sbjct: 241 AAIQALNNSVLEGQKIRVNKA 260

[Close]

BLAST of Carg13463 vs. ExPASy Swiss-Prot
Match: Q39061 (RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP33 PE=2 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 1.5e-31
Identity = 70/185 (37.84%), Postives = 116/185 (62.70%), Query Frame = 0


Query: 59  SSVAERKLYVGNIPRNVDNEELKRIVEQHGAVEKAEVMYDKYSGRSRRFAFVTMKTVDDA 118
           +S  E +LYVGN+P  + + EL +I  + G V   +++YDK + RSR F FVTM ++++A
Sbjct: 111 ASGEEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEA 170

Query: 119 NAAIEKLNETDVGGRTIKVNITEKP--VVNTVDMSLLEAEESQFIDSPHKVYVGNISSTV 178
             A++  N + +GGRT+KVN  E P    N V  + +      ++DSPHKVY GN+   +
Sbjct: 171 KEAMQMFNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGWNL 230

Query: 179 STETLKNFFSEKGKVLSAKVSRVPGTSKASGYGFVTFSSEEEVEAAISSFNNALLEGQPI 238
           +++ LK+ F ++  VL AKV     T ++ G+GF++F S E V++A+++ N   +EG+ +
Sbjct: 231 TSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGRAL 290

Query: 239 RVNKA 242
           R+N A
Sbjct: 291 RLNLA 295

[Close]

BLAST of Carg13463 vs. ExPASy Swiss-Prot
Match: P19684 (33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 2.6e-31
Identity = 73/187 (39.04%), Postives = 119/187 (63.64%), Query Frame = 0


Query: 57  DSSSVAERKLYVGNIPRNVDNEELKRIVEQHGAVEKAEVMYDKYSGRSRRFAFVTMKTVD 116
           +S SV   +LYVGN+P ++ + +L  I  + G V   E++YD+ + RSR FAFVTM +V+
Sbjct: 107 ESESVEGGRLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVE 166

Query: 117 DANAAIEKLNETDVGGRTIKVNITEKP--VVNTVDMSLLEAEESQFIDSPHKVYVGNISS 176
           +A  AI   + + VGGRT+KVN  E P      V  + + +    F+DSPHK+YV N+S 
Sbjct: 167 EAKEAIRLFDGSQVGGRTVKVNFPEVPRGGEREVMSAKIRSTYQGFVDSPHKLYVANLSW 226

Query: 177 TVSTETLKNFFSEKGKVLSAKVSRVPGTSKASGYGFVTFSSEEEVEAAISSFNNALLEGQ 236
            ++++ L++ F+++   +SAKV     + ++ G+GF+TFSS E + +A+ + N   LEG+
Sbjct: 227 ALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTMNEVELEGR 286

Query: 237 PIRVNKA 242
           P+R+N A
Sbjct: 287 PLRLNVA 293

[Close]

BLAST of Carg13463 vs. ExPASy Swiss-Prot
Match: Q9ZUU4 (RNA-binding protein CP29B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP29B PE=1 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 4.6e-28
Identity = 77/200 (38.50%), Postives = 116/200 (58.00%), Query Frame = 0


Query: 56  QDSSSVAERKLYVGNIPRNVDNEELKRIVEQHGAVEKAEVMYDKYSGRSRRFAFVTMKTV 115
           ++ S  A+ KL+VGN+P NVD+ +L ++ E  G VE  EV+YDK +GRSR F FVTM +V
Sbjct: 83  KEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSV 142

Query: 116 DDANAAIEKLNETDVGGRTIKVNITEKPVVNTVDMSLLEAEESQF--------------I 175
            +  AA ++ N  ++ GR ++VN    P       S      S F               
Sbjct: 143 SEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGFS--RGPRSSFGSSGSGYGGGGGSGA 202

Query: 176 DSPHKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKASGYGFVTFSSEEEVEA 235
            S ++VYVGN+S  V    L++ FSE+GKV+ A+V     + ++ G+GFVT+ S +EV+ 
Sbjct: 203 GSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQN 262

Query: 236 AISSFNNALLEGQPIRVNKA 242
           AI S + A L+G+ IRV++A
Sbjct: 263 AIKSLDGADLDGRQIRVSEA 280

[Close]

BLAST of Carg13463 vs. ExPASy TrEMBL
Match: A0A6J1H8X7 (30S ribosomal protein 2, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111460708 PE=4 SV=1)

HSP 1 Score: 451.8 bits (1161), Expect = 1.8e-123
Identity = 240/241 (99.59%), Postives = 240/241 (99.59%), Query Frame = 0


Query: 1   MASISAVLSPTNLIHSSTKPAEILLKSVSFHRRHTHTLLRLSPGRPTRLFAALTAQDSSS 60
           MASISAVLSPTNLIHSSTKPAEILLKSVSFHRR THTLLRLSPGRPTRLFAALTAQDSSS
Sbjct: 1   MASISAVLSPTNLIHSSTKPAEILLKSVSFHRRRTHTLLRLSPGRPTRLFAALTAQDSSS 60

Query: 61  VAERKLYVGNIPRNVDNEELKRIVEQHGAVEKAEVMYDKYSGRSRRFAFVTMKTVDDANA 120
           VAERKLYVGNIPRNVDNEELKRIVEQHGAVEKAEVMYDKYSGRSRRFAFVTMKTVDDANA
Sbjct: 61  VAERKLYVGNIPRNVDNEELKRIVEQHGAVEKAEVMYDKYSGRSRRFAFVTMKTVDDANA 120

Query: 121 AIEKLNETDVGGRTIKVNITEKPVVNTVDMSLLEAEESQFIDSPHKVYVGNISSTVSTET 180
           AIEKLNETDVGGRTIKVNITEKPVVNTVDMSLLEAEESQFIDSPHKVYVGNISSTVSTET
Sbjct: 121 AIEKLNETDVGGRTIKVNITEKPVVNTVDMSLLEAEESQFIDSPHKVYVGNISSTVSTET 180

Query: 181 LKNFFSEKGKVLSAKVSRVPGTSKASGYGFVTFSSEEEVEAAISSFNNALLEGQPIRVNK 240
           LKNFFSEKGKVLSAKVSRVPGTSKASGYGFVTFSSEEEVEAAISSFNNALLEGQPIRVNK
Sbjct: 181 LKNFFSEKGKVLSAKVSRVPGTSKASGYGFVTFSSEEEVEAAISSFNNALLEGQPIRVNK 240

Query: 241 A 242
           A
Sbjct: 241 A 241

[Close]

BLAST of Carg13463 vs. ExPASy TrEMBL
Match: A0A6J1KSN9 (30S ribosomal protein 2, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111497873 PE=4 SV=1)

HSP 1 Score: 441.4 bits (1134), Expect = 2.4e-120
Identity = 235/241 (97.51%), Postives = 236/241 (97.93%), Query Frame = 0


Query: 1   MASISAVLSPTNLIHSSTKPAEILLKSVSFHRRHTHTLLRLSPGRPTRLFAALTAQDSSS 60
           MASISAVLSPTNLIHSSTKPAEILLKSVSFHRR THTLLRLSPGRP+RLFAALTAQDSSS
Sbjct: 1   MASISAVLSPTNLIHSSTKPAEILLKSVSFHRRRTHTLLRLSPGRPSRLFAALTAQDSSS 60

Query: 61  VAERKLYVGNIPRNVDNEELKRIVEQHGAVEKAEVMYDKYSGRSRRFAFVTMKTVDDANA 120
           VAERKLYVGNIPRNVDNEEL RIVEQHGAVEKAEVMYDKYSGRSRRFAFVTMKTVDDANA
Sbjct: 61  VAERKLYVGNIPRNVDNEELTRIVEQHGAVEKAEVMYDKYSGRSRRFAFVTMKTVDDANA 120

Query: 121 AIEKLNETDVGGRTIKVNITEKPVVNTVDMSLLEAEESQFIDSPHKVYVGNISSTVSTET 180
           AIEKLNETDVGGRTIKVNITEKPVVN VDMSLLEAEESQFIDSPHKVYVGNISSTVSTET
Sbjct: 121 AIEKLNETDVGGRTIKVNITEKPVVNMVDMSLLEAEESQFIDSPHKVYVGNISSTVSTET 180

Query: 181 LKNFFSEKGKVLSAKVSRVPGTSKASGYGFVTFSSEEEVEAAISSFNNALLEGQPIRVNK 240
           LKNFFSEK KVLSAKVSRVPGTSKASGYGFVTFSSEEEVEAAISSFNN LLEGQPIRVNK
Sbjct: 181 LKNFFSEKDKVLSAKVSRVPGTSKASGYGFVTFSSEEEVEAAISSFNNVLLEGQPIRVNK 240

Query: 241 A 242
           A
Sbjct: 241 A 241

[Close]

BLAST of Carg13463 vs. ExPASy TrEMBL
Match: A0A6J1JXN0 (30S ribosomal protein 2, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111488418 PE=4 SV=1)

HSP 1 Score: 376.3 bits (965), Expect = 9.4e-101
Identity = 208/259 (80.31%), Postives = 226/259 (87.26%), Query Frame = 0


Query: 1   MASISAVLSPTNLIHSSTKPAEI-------LLKSVSFHRRHTHTLLRLSPG-------RP 60
           MASIS++L+P NLIHSS KP EI        L+ +SFH R  +TLLR+SPG       R 
Sbjct: 1   MASISSILTPANLIHSSIKPTEIPQNLSTQFLRPISFHPR--YTLLRVSPGLQTSAGKRR 60

Query: 61  TRLF----AALTAQDSSSVAERKLYVGNIPRNVDNEELKRIVEQHGAVEKAEVMYDKYSG 120
           TRLF    AA++ QD SSVA RKLY+GNIPRNV NEEL RIVE+HGAVEKAEVMYDKYSG
Sbjct: 61  TRLFAVAEAAVSVQDPSSVAARKLYIGNIPRNVGNEELTRIVEEHGAVEKAEVMYDKYSG 120

Query: 121 RSRRFAFVTMKTVDDANAAIEKLNETDVGGRTIKVNITEKPVVNTVDMSLLEAEESQFID 180
           RSRRFAFVTMKTVDDANA IEKLN+T+VGGRTIKVNITEKP+VNTVDMSLL+A+ESQFID
Sbjct: 121 RSRRFAFVTMKTVDDANAVIEKLNDTEVGGRTIKVNITEKPLVNTVDMSLLQADESQFID 180

Query: 181 SPHKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKASGYGFVTFSSEEEVEAA 240
           SP+KVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSK+SGYGFVTFSSEEEVEAA
Sbjct: 181 SPYKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAA 240

Query: 241 ISSFNNALLEGQPIRVNKA 242
           ISSFNNALLEGQPIRVNKA
Sbjct: 241 ISSFNNALLEGQPIRVNKA 257

[Close]

BLAST of Carg13463 vs. ExPASy TrEMBL
Match: A0A6J1GSN8 (30S ribosomal protein 2, chloroplastic-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111456607 PE=4 SV=1)

HSP 1 Score: 376.3 bits (965), Expect = 9.4e-101
Identity = 208/259 (80.31%), Postives = 226/259 (87.26%), Query Frame = 0


Query: 1   MASISAVLSPTNLIHSSTKPAEI-------LLKSVSFHRRHTHTLLRLSPG-------RP 60
           MASIS++L+P NLIHSS KP EI        L+ +SFH R  +TLLR+SPG       R 
Sbjct: 1   MASISSILTPANLIHSSIKPTEIPQTLSTQFLRPISFHPR--YTLLRVSPGLQTSAGKRR 60

Query: 61  TRLF----AALTAQDSSSVAERKLYVGNIPRNVDNEELKRIVEQHGAVEKAEVMYDKYSG 120
           TRLF    AA++ QD SSVA RKLY+GNIPRNV NEEL RIVE+HGAVEKAEVMYDKYSG
Sbjct: 61  TRLFAVAEAAVSVQDPSSVAARKLYIGNIPRNVGNEELTRIVEEHGAVEKAEVMYDKYSG 120

Query: 121 RSRRFAFVTMKTVDDANAAIEKLNETDVGGRTIKVNITEKPVVNTVDMSLLEAEESQFID 180
           RSRRFAFVTMKTVDDANA IEKLN+T+VGGRTIKVNITEKP+VNTVDMSLL+A+ESQFID
Sbjct: 121 RSRRFAFVTMKTVDDANAVIEKLNDTEVGGRTIKVNITEKPLVNTVDMSLLQADESQFID 180

Query: 181 SPHKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKASGYGFVTFSSEEEVEAA 240
           SP+KVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSK+SGYGFVTFSSEEEVEAA
Sbjct: 181 SPYKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAA 240

Query: 241 ISSFNNALLEGQPIRVNKA 242
           ISSFNNALLEGQPIRVNKA
Sbjct: 241 ISSFNNALLEGQPIRVNKA 257

[Close]

BLAST of Carg13463 vs. ExPASy TrEMBL
Match: A0A6J1GQT6 (30S ribosomal protein 2, chloroplastic-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111456607 PE=4 SV=1)

HSP 1 Score: 376.3 bits (965), Expect = 9.4e-101
Identity = 208/259 (80.31%), Postives = 226/259 (87.26%), Query Frame = 0


Query: 1   MASISAVLSPTNLIHSSTKPAEI-------LLKSVSFHRRHTHTLLRLSPG-------RP 60
           MASIS++L+P NLIHSS KP EI        L+ +SFH R  +TLLR+SPG       R 
Sbjct: 23  MASISSILTPANLIHSSIKPTEIPQTLSTQFLRPISFHPR--YTLLRVSPGLQTSAGKRR 82

Query: 61  TRLF----AALTAQDSSSVAERKLYVGNIPRNVDNEELKRIVEQHGAVEKAEVMYDKYSG 120
           TRLF    AA++ QD SSVA RKLY+GNIPRNV NEEL RIVE+HGAVEKAEVMYDKYSG
Sbjct: 83  TRLFAVAEAAVSVQDPSSVAARKLYIGNIPRNVGNEELTRIVEEHGAVEKAEVMYDKYSG 142

Query: 121 RSRRFAFVTMKTVDDANAAIEKLNETDVGGRTIKVNITEKPVVNTVDMSLLEAEESQFID 180
           RSRRFAFVTMKTVDDANA IEKLN+T+VGGRTIKVNITEKP+VNTVDMSLL+A+ESQFID
Sbjct: 143 RSRRFAFVTMKTVDDANAVIEKLNDTEVGGRTIKVNITEKPLVNTVDMSLLQADESQFID 202

Query: 181 SPHKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKASGYGFVTFSSEEEVEAA 240
           SP+KVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSK+SGYGFVTFSSEEEVEAA
Sbjct: 203 SPYKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAA 262

Query: 241 ISSFNNALLEGQPIRVNKA 242
           ISSFNNALLEGQPIRVNKA
Sbjct: 263 ISSFNNALLEGQPIRVNKA 279

[Close]

BLAST of Carg13463 vs. TAIR 10
Match: AT3G52150.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 260.8 bits (665), Expect = 1.1e-69
Identity = 129/187 (68.98%), Postives = 161/187 (86.10%), Query Frame = 0


Query: 55  AQDSSSVAERKLYVGNIPRNVDNEELKRIVEQHGAVEKAEVMYDKYSGRSRRFAFVTMKT 114
           A D SS A R++Y+GNIPR V NE+L ++VE+HGAVEK +VMYDKYSGRSRRF F TMK+
Sbjct: 67  ALDPSSEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKS 126

Query: 115 VDDANAAIEKLNETDVGGRTIKVNITEKPVVNTVDMSLLEAEESQFIDSPHKVYVGNISS 174
           V+DANA +EKLN   V GR IKVNITEKP+ ++ D+S+L++E+S F+DSP+KVYVGN++ 
Sbjct: 127 VEDANAVVEKLNGNTVEGREIKVNITEKPIASSPDLSVLQSEDSAFVDSPYKVYVGNLAK 186

Query: 175 TVSTETLKNFFSEKGKVLSAKVSRVPGTSKASGYGFVTFSSEEEVEAAISSFNNALLEGQ 234
           TV+ E L+N FSEKGKV+SAKVSRVPGTSK++G+GFVTFSSEE+VEAAI + NN+LLEGQ
Sbjct: 187 TVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLLEGQ 246

Query: 235 PIRVNKA 242
            IRVNKA
Sbjct: 247 KIRVNKA 253

[Close]

BLAST of Carg13463 vs. TAIR 10
Match: AT3G52150.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 260.8 bits (665), Expect = 1.1e-69
Identity = 129/187 (68.98%), Postives = 161/187 (86.10%), Query Frame = 0


Query: 55  AQDSSSVAERKLYVGNIPRNVDNEELKRIVEQHGAVEKAEVMYDKYSGRSRRFAFVTMKT 114
           A D SS A R++Y+GNIPR V NE+L ++VE+HGAVEK +VMYDKYSGRSRRF F TMK+
Sbjct: 67  ALDPSSEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKS 126

Query: 115 VDDANAAIEKLNETDVGGRTIKVNITEKPVVNTVDMSLLEAEESQFIDSPHKVYVGNISS 174
           V+DANA +EKLN   V GR IKVNITEKP+ ++ D+S+L++E+S F+DSP+KVYVGN++ 
Sbjct: 127 VEDANAVVEKLNGNTVEGREIKVNITEKPIASSPDLSVLQSEDSAFVDSPYKVYVGNLAK 186

Query: 175 TVSTETLKNFFSEKGKVLSAKVSRVPGTSKASGYGFVTFSSEEEVEAAISSFNNALLEGQ 234
           TV+ E L+N FSEKGKV+SAKVSRVPGTSK++G+GFVTFSSEE+VEAAI + NN+LLEGQ
Sbjct: 187 TVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLLEGQ 246

Query: 235 PIRVNKA 242
            IRVNKA
Sbjct: 247 KIRVNKA 253

[Close]

BLAST of Carg13463 vs. TAIR 10
Match: AT3G52380.1 (chloroplast RNA-binding protein 33 )

HSP 1 Score: 137.9 bits (346), Expect = 1.1e-32
Identity = 70/185 (37.84%), Postives = 116/185 (62.70%), Query Frame = 0


Query: 59  SSVAERKLYVGNIPRNVDNEELKRIVEQHGAVEKAEVMYDKYSGRSRRFAFVTMKTVDDA 118
           +S  E +LYVGN+P  + + EL +I  + G V   +++YDK + RSR F FVTM ++++A
Sbjct: 111 ASGEEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEA 170

Query: 119 NAAIEKLNETDVGGRTIKVNITEKP--VVNTVDMSLLEAEESQFIDSPHKVYVGNISSTV 178
             A++  N + +GGRT+KVN  E P    N V  + +      ++DSPHKVY GN+   +
Sbjct: 171 KEAMQMFNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGWNL 230

Query: 179 STETLKNFFSEKGKVLSAKVSRVPGTSKASGYGFVTFSSEEEVEAAISSFNNALLEGQPI 238
           +++ LK+ F ++  VL AKV     T ++ G+GF++F S E V++A+++ N   +EG+ +
Sbjct: 231 TSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGRAL 290

Query: 239 RVNKA 242
           R+N A
Sbjct: 291 RLNLA 295

[Close]

BLAST of Carg13463 vs. TAIR 10
Match: AT1G60000.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 134.4 bits (337), Expect = 1.2e-31
Identity = 84/226 (37.17%), Postives = 126/226 (55.75%), Query Frame = 0


Query: 16  SSTKPAEILLKSVSFHRRHTHTLLRLSPGRPTRLFAALTAQDSSSVAERKLYVGNIPRNV 75
           S+ KP  I  +S S   R     + +      +   A    D  +    KLY GN+P NV
Sbjct: 37  STPKPLLISSRSCSRRFRVLSETITVKLEEEEKDDGASAVLDPPAAVNTKLYFGNLPYNV 96

Query: 76  DNEELKRIVEQHGAVEKAEVMYDKYSGRSRRFAFVTMKTVDDANAAIEKLNETDVGGRTI 135
           D+  L +I++     E  EV+Y++ +G+SR FAFVTM  V+D N  I+ L+ T+  GR +
Sbjct: 97  DSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNIIIDNLDGTEYLGRAL 156

Query: 136 KVNITEKPVVNTVDMSLLEAEESQFIDSPHKVYVGNISSTVSTETLKNFFSEKGKVLSAK 195
           KVN  +KP  N         +E  + ++ HK++VGN+S TV++E+L   F E G V+ A+
Sbjct: 157 KVNFADKPKPN---------KEPLYPETEHKLFVGNLSWTVTSESLAGAFRECGDVVGAR 216

Query: 196 VSRVPGTSKASGYGFVTFSSEEEVEAAISSFNNALLEGQPIRVNKA 242
           V     T ++ GYGFV +SS+ E+E A+ S +   LEG+ IRVN A
Sbjct: 217 VVFDGDTGRSRGYGFVCYSSKAEMETALESLDGFELEGRAIRVNLA 253

[Close]

BLAST of Carg13463 vs. TAIR 10
Match: AT2G37220.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 126.3 bits (316), Expect = 3.3e-29
Identity = 77/200 (38.50%), Postives = 116/200 (58.00%), Query Frame = 0


Query: 56  QDSSSVAERKLYVGNIPRNVDNEELKRIVEQHGAVEKAEVMYDKYSGRSRRFAFVTMKTV 115
           ++ S  A+ KL+VGN+P NVD+ +L ++ E  G VE  EV+YDK +GRSR F FVTM +V
Sbjct: 83  KEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSV 142

Query: 116 DDANAAIEKLNETDVGGRTIKVNITEKPVVNTVDMSLLEAEESQF--------------I 175
            +  AA ++ N  ++ GR ++VN    P       S      S F               
Sbjct: 143 SEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGFS--RGPRSSFGSSGSGYGGGGGSGA 202

Query: 176 DSPHKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKASGYGFVTFSSEEEVEA 235
            S ++VYVGN+S  V    L++ FSE+GKV+ A+V     + ++ G+GFVT+ S +EV+ 
Sbjct: 203 GSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQN 262

Query: 236 AISSFNNALLEGQPIRVNKA 242
           AI S + A L+G+ IRV++A
Sbjct: 263 AIKSLDGADLDGRQIRVSEA 280

The following BLAST results are available for this feature:

BLAST of Carg13463 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7025672.1	4.3e-124	100.00	30S ribosomal protein 2, chloroplastic [Cucurbita argyrosperma subsp. argyrosper...	[more]
XP_022959724.1	3.6e-123	99.59	30S ribosomal protein 2, chloroplastic-like [Cucurbita moschata]	[more]
KAG6593325.1	1.1e-122	100.00	30S ribosomal protein 2, chloroplastic, partial [Cucurbita argyrosperma subsp. s...	[more]
XP_023513630.1	5.8e-121	97.93	30S ribosomal protein 2, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]
XP_023004641.1	4.9e-120	97.51	30S ribosomal protein 2, chloroplastic-like [Cucurbita maxima]	[more]

BLAST of Carg13463 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8VYM4	1.6e-68	68.98	30S ribosomal protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSRP2 ...	[more]
P82277	3.5e-68	56.32	30S ribosomal protein 2, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSRP2 PE=...	[more]
Q39061	1.5e-31	37.84	RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP33 ...	[more]
P19684	2.6e-31	39.04	33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=...	[more]
Q9ZUU4	4.6e-28	38.50	RNA-binding protein CP29B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP29...	[more]

BLAST of Carg13463 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H8X7	1.8e-123	99.59	30S ribosomal protein 2, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A6J1KSN9	2.4e-120	97.51	30S ribosomal protein 2, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A6J1JXN0	9.4e-101	80.31	30S ribosomal protein 2, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A6J1GSN8	9.4e-101	80.31	30S ribosomal protein 2, chloroplastic-like isoform X2 OS=Cucurbita moschata OX=...	[more]
A0A6J1GQT6	9.4e-101	80.31	30S ribosomal protein 2, chloroplastic-like isoform X1 OS=Cucurbita moschata OX=...	[more]

BLAST of Carg13463 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G52150.1	1.1e-69	68.98	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G52150.2	1.1e-69	68.98	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G52380.1	1.1e-32	37.84	chloroplast RNA-binding protein 33	[more]
AT1G60000.1	1.2e-31	37.17	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G37220.1	3.3e-29	38.50	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 166..239 e-value: 5.9E-22 score: 88.9 coord: 65..138 e-value: 2.5E-27 score: 106.8
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 167..237 e-value: 6.0E-17 score: 61.3 coord: 66..136 e-value: 1.7E-20 score: 72.6
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 165..241 score: 18.188618
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 64..142 score: 18.700279
IPR003954	RNA recognition motif domain, eukaryote	SMART	SM00361	rrm2_1	coord: 166..239 e-value: 0.11 score: 21.6 coord: 65..138 e-value: 0.8 score: 15.2
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 152..241 e-value: 3.1E-23 score: 84.1
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 44..147 e-value: 1.6E-27 score: 98.4
None	No IPR available	PANTHER	PTHR48025	OS02G0815200 PROTEIN	coord: 14..241
None	No IPR available	PANTHER	PTHR48025:SF4	30S RIBOSOMAL PROTEIN 2, CHLOROPLASTIC	coord: 14..241
None	No IPR available	CDD	cd12399	RRM_HP0827_like	coord: 65..142 e-value: 1.34228E-35 score: 119.64
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 55..142
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 160..241

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg13463-RA	Carg13463-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding