Carg13449 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg13449
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	thylakoid lumenal 19 kDa protein, chloroplastic-like
Location	Carg_Chr08: 2899290 .. 2900545 (-)
RNA-Seq Expression	Carg13449
Synteny	Carg13449

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAGATAAACCAGAAACCCAATTCCACGAAAATCAATCGCTATGGCCACAGCAATCTCACCACTGGCGTTCTTCTCCGCCGGCGCCGCGGCAACGACCGGCGCGATCGTCCCAAAGCCGTCGCAAACTCCGCCGCTACCAAAGCCCCTGATTCCCGTTCTTCAATCTAATCCCTCTGGCCCACTTTCCTCGTTAACTGCCCCCATCTCCGCCATCGCCGTAGCCGCGATCTTGAGCACCACTCCACCGTCACTGGCTGACGCCGGCGGCGCTTTCAATGTCTATTATGGAACCGCCGCCAGTGCGGCCAATTACGGCGGCTTCGGCGGCAACGCAAGCAAGAAAGACTCGGCAGAATACATCTACGACGTGCCGGAAGGCTGGAAGGAGCGATTAGTGTCCAAGGTCGAAAAAGGTATTTCAATTTCGCTGTTGAAATCTCTAAATTAAAGAGGTTTAACGGAAAATTTCGTTTCGAAAATCGATTTTATGATCTTAATTTTGCAGGCACGAATGGAACCGACAGCGAATTTTACAATCCGAAGAAACGGAAGGAGAAAGAATACCTAACTTTCCTGGCTGGAATCCGGCAATTAGCGCCGAAGGATGTGATTCTGAATAACCTAGCGCTATCGGACGTGAATTTGCAGGATCAGATCGCGAGCGCTGAGGGCTTCTCGGCGGAGGAAAAGAAGGATGAGAATGGACAGATTTATTACGTGTATGAGATCGACGGCGCTGGAACTCACAGTTTGATATCGGTGACTTGTGCGAAGAACAAGCTGTATGCGCATTTTGTTAATGCGCCGACGCCGGAGTGGGATCGGGACCAGGATATGCTCCGGCATGTTCATGAGTCGTTCAAGACGGTCGGATCGTATTAGCTTTTGTGGTGTGGTTGGAGATTTGATCGGAGAGAGGTCTGTTGCTGTGTATGAATTGGTTGTTACATTCTTATTCTTGAATGCAGGAAATCTACTGGTTTTTCACCATAATTTCATCACCAATTTTGATCTTAGAAACCGAAAGTTTTCAGAGGATGATTAAATGGTTTGAATTGATGAACATTTCTAAGCTGATCAGGAGGATTGTTATGTTGGATGAAATTAGGTGATCACTAGTTTATAATCCTATAGTGGTACGAGGTCTTTTGGGAAGTCCAAAACAAAGGTACGGCACGATAGCTTATACTCGAGTAGACAATATCATATCATTGTAGAGAGTCGTGTTCAACTAAGTCTATTTTCTTTGCAATCA

mRNA sequence

CAAGATAAACCAGAAACCCAATTCCACGAAAATCAATCGCTATGGCCACAGCAATCTCACCACTGGCGTTCTTCTCCGCCGGCGCCGCGGCAACGACCGGCGCGATCGTCCCAAAGCCGTCGCAAACTCCGCCGCTACCAAAGCCCCTGATTCCCGTTCTTCAATCTAATCCCTCTGGCCCACTTTCCTCGTTAACTGCCCCCATCTCCGCCATCGCCGTAGCCGCGATCTTGAGCACCACTCCACCGTCACTGGCTGACGCCGGCGGCGCTTTCAATGTCTATTATGGAACCGCCGCCAGTGCGGCCAATTACGGCGGCTTCGGCGGCAACGCAAGCAAGAAAGACTCGGCAGAATACATCTACGACGTGCCGGAAGGCTGGAAGGAGCGATTAGTGTCCAAGGTCGAAAAAGGCACGAATGGAACCGACAGCGAATTTTACAATCCGAAGAAACGGAAGGAGAAAGAATACCTAACTTTCCTGGCTGGAATCCGGCAATTAGCGCCGAAGGATGTGATTCTGAATAACCTAGCGCTATCGGACGTGAATTTGCAGGATCAGATCGCGAGCGCTGAGGGCTTCTCGGCGGAGGAAAAGAAGGATGAGAATGGACAGATTTATTACGTGTATGAGATCGACGGCGCTGGAACTCACAGTTTGATATCGGTGACTTGTGCGAAGAACAAGCTGTATGCGCATTTTGTTAATGCGCCGACGCCGGAGTGGGATCGGGACCAGGATATGCTCCGGCATGTTCATGAGTCGTTCAAGACGGTCGGATCGTATTAGCTTTTGTGGTGTGGTTGGAGATTTGATCGGAGAGAGGTCTGTTGCTGTGTATGAATTGGTTGTTACATTCTTATTCTTGAATGCAGGAAATCTACTGGTTTTTCACCATAATTTCATCACCAATTTTGATCTTAGAAACCGAAAGTTTTCAGAGGATGATTAAATGGTTTGAATTGATGAACATTTCTAAGCTGATCAGGAGGATTGTTATGTTGGATGAAATTAGGTGATCACTAGTTTATAATCCTATAGTGGTACGAGGTCTTTTGGGAAGTCCAAAACAAAGGTACGGCACGATAGCTTATACTCGAGTAGACAATATCATATCATTGTAGAGAGTCGTGTTCAACTAAGTCTATTTTCTTTGCAATCA

Coding sequence (CDS)

ATGGCCACAGCAATCTCACCACTGGCGTTCTTCTCCGCCGGCGCCGCGGCAACGACCGGCGCGATCGTCCCAAAGCCGTCGCAAACTCCGCCGCTACCAAAGCCCCTGATTCCCGTTCTTCAATCTAATCCCTCTGGCCCACTTTCCTCGTTAACTGCCCCCATCTCCGCCATCGCCGTAGCCGCGATCTTGAGCACCACTCCACCGTCACTGGCTGACGCCGGCGGCGCTTTCAATGTCTATTATGGAACCGCCGCCAGTGCGGCCAATTACGGCGGCTTCGGCGGCAACGCAAGCAAGAAAGACTCGGCAGAATACATCTACGACGTGCCGGAAGGCTGGAAGGAGCGATTAGTGTCCAAGGTCGAAAAAGGCACGAATGGAACCGACAGCGAATTTTACAATCCGAAGAAACGGAAGGAGAAAGAATACCTAACTTTCCTGGCTGGAATCCGGCAATTAGCGCCGAAGGATGTGATTCTGAATAACCTAGCGCTATCGGACGTGAATTTGCAGGATCAGATCGCGAGCGCTGAGGGCTTCTCGGCGGAGGAAAAGAAGGATGAGAATGGACAGATTTATTACGTGTATGAGATCGACGGCGCTGGAACTCACAGTTTGATATCGGTGACTTGTGCGAAGAACAAGCTGTATGCGCATTTTGTTAATGCGCCGACGCCGGAGTGGGATCGGGACCAGGATATGCTCCGGCATGTTCATGAGTCGTTCAAGACGGTCGGATCGTATTAG

Protein sequence

MATAISPLAFFSAGAAATTGAIVPKPSQTPPLPKPLIPVLQSNPSGPLSSLTAPISAIAVAAILSTTPPSLADAGGAFNVYYGTAASAANYGGFGGNASKKDSAEYIYDVPEGWKERLVSKVEKGTNGTDSEFYNPKKRKEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIASAEGFSAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWDRDQDMLRHVHESFKTVGSY

Homology

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BLAST of Carg13449 vs. NCBI nr
Match: KAG7025659.1 (Thylakoid lumenal 19 kDa protein, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 483.8 bits (1244), Expect = 8.9e-133
Identity = 249/249 (100.00%), Postives = 249/249 (100.00%), Query Frame = 0


Query: 1   MATAISPLAFFSAGAAATTGAIVPKPSQTPPLPKPLIPVLQSNPSGPLSSLTAPISAIAV 60
           MATAISPLAFFSAGAAATTGAIVPKPSQTPPLPKPLIPVLQSNPSGPLSSLTAPISAIAV
Sbjct: 1   MATAISPLAFFSAGAAATTGAIVPKPSQTPPLPKPLIPVLQSNPSGPLSSLTAPISAIAV 60

Query: 61  AAILSTTPPSLADAGGAFNVYYGTAASAANYGGFGGNASKKDSAEYIYDVPEGWKERLVS 120
           AAILSTTPPSLADAGGAFNVYYGTAASAANYGGFGGNASKKDSAEYIYDVPEGWKERLVS
Sbjct: 61  AAILSTTPPSLADAGGAFNVYYGTAASAANYGGFGGNASKKDSAEYIYDVPEGWKERLVS 120

Query: 121 KVEKGTNGTDSEFYNPKKRKEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIASAEG 180
           KVEKGTNGTDSEFYNPKKRKEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIASAEG
Sbjct: 121 KVEKGTNGTDSEFYNPKKRKEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIASAEG 180

Query: 181 FSAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWDRDQDMLRHVH 240
           FSAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWDRDQDMLRHVH
Sbjct: 181 FSAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWDRDQDMLRHVH 240

Query: 241 ESFKTVGSY 250
           ESFKTVGSY
Sbjct: 241 ESFKTVGSY 249

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BLAST of Carg13449 vs. NCBI nr
Match: XP_022959905.1 (thylakoid lumenal 19 kDa protein, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 479.9 bits (1234), Expect = 1.3e-131
Identity = 247/249 (99.20%), Postives = 248/249 (99.60%), Query Frame = 0


Query: 1   MATAISPLAFFSAGAAATTGAIVPKPSQTPPLPKPLIPVLQSNPSGPLSSLTAPISAIAV 60
           MATAISPLAFFSAGAAATTGAIVPKPSQTPPLPKPLIPVLQSNPSGPLSSL+APISAIAV
Sbjct: 1   MATAISPLAFFSAGAAATTGAIVPKPSQTPPLPKPLIPVLQSNPSGPLSSLSAPISAIAV 60

Query: 61  AAILSTTPPSLADAGGAFNVYYGTAASAANYGGFGGNASKKDSAEYIYDVPEGWKERLVS 120
           AAILSTTPPSLADAGGAFNVYYGTAASAANYGGFGGNASKKDSAEYIYDVPEGWKERLVS
Sbjct: 61  AAILSTTPPSLADAGGAFNVYYGTAASAANYGGFGGNASKKDSAEYIYDVPEGWKERLVS 120

Query: 121 KVEKGTNGTDSEFYNPKKRKEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIASAEG 180
           KVEKGTNGTDSEFYNPKKRKEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIASAEG
Sbjct: 121 KVEKGTNGTDSEFYNPKKRKEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIASAEG 180

Query: 181 FSAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWDRDQDMLRHVH 240
            SAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWDRDQDMLRHVH
Sbjct: 181 ISAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWDRDQDMLRHVH 240

Query: 241 ESFKTVGSY 250
           ESFKTVGSY
Sbjct: 241 ESFKTVGSY 249

[Close]

BLAST of Carg13449 vs. NCBI nr
Match: XP_023513479.1 (thylakoid lumenal 19 kDa protein, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 477.2 bits (1227), Expect = 8.4e-131
Identity = 246/249 (98.80%), Postives = 247/249 (99.20%), Query Frame = 0


Query: 1   MATAISPLAFFSAGAAATTGAIVPKPSQTPPLPKPLIPVLQSNPSGPLSSLTAPISAIAV 60
           MATAISPLAFFSAGAAATTGAIVPKPSQTPPLPKPLIPVLQSNPSG LSSLTAPISAIAV
Sbjct: 1   MATAISPLAFFSAGAAATTGAIVPKPSQTPPLPKPLIPVLQSNPSGSLSSLTAPISAIAV 60

Query: 61  AAILSTTPPSLADAGGAFNVYYGTAASAANYGGFGGNASKKDSAEYIYDVPEGWKERLVS 120
           AAILSTTPPSLAD GGAF+VYYGTAASAANYGGFGGNASKKDSAEYIYDVPEGWKERLVS
Sbjct: 61  AAILSTTPPSLADTGGAFSVYYGTAASAANYGGFGGNASKKDSAEYIYDVPEGWKERLVS 120

Query: 121 KVEKGTNGTDSEFYNPKKRKEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIASAEG 180
           KVEKGTNGTDSEFYNPKKRKEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIASAEG
Sbjct: 121 KVEKGTNGTDSEFYNPKKRKEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIASAEG 180

Query: 181 FSAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWDRDQDMLRHVH 240
           FSAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWDRDQDMLRHVH
Sbjct: 181 FSAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWDRDQDMLRHVH 240

Query: 241 ESFKTVGSY 250
           ESFKTVGSY
Sbjct: 241 ESFKTVGSY 249

[Close]

BLAST of Carg13449 vs. NCBI nr
Match: XP_023004635.1 (thylakoid lumenal 19 kDa protein, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 468.8 bits (1205), Expect = 3.0e-128
Identity = 242/249 (97.19%), Postives = 243/249 (97.59%), Query Frame = 0


Query: 1   MATAISPLAFFSAGAAATTGAIVPKPSQTPPLPKPLIPVLQSNPSGPLSSLTAPISAIAV 60
           MATAISPLAFFSAGAAATTGAIVPKPSQTPPLPKPLIP LQSN  GPLSSLTAPISAIAV
Sbjct: 1   MATAISPLAFFSAGAAATTGAIVPKPSQTPPLPKPLIPFLQSNTPGPLSSLTAPISAIAV 60

Query: 61  AAILSTTPPSLADAGGAFNVYYGTAASAANYGGFGGNASKKDSAEYIYDVPEGWKERLVS 120
           AAILSTTPP LA  GGAFNVYYGTAASAANYGGFGGNASKKDSAEYIYDVPEGWKERLVS
Sbjct: 61  AAILSTTPPLLAATGGAFNVYYGTAASAANYGGFGGNASKKDSAEYIYDVPEGWKERLVS 120

Query: 121 KVEKGTNGTDSEFYNPKKRKEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIASAEG 180
           KVEKGTNGTDSEFYNPKKRKEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIASAEG
Sbjct: 121 KVEKGTNGTDSEFYNPKKRKEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIASAEG 180

Query: 181 FSAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWDRDQDMLRHVH 240
           FSAEE+KDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWDRDQDMLRHVH
Sbjct: 181 FSAEERKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWDRDQDMLRHVH 240

Query: 241 ESFKTVGSY 250
           ESFKTVGSY
Sbjct: 241 ESFKTVGSY 249

[Close]

BLAST of Carg13449 vs. NCBI nr
Match: XP_038896859.1 (thylakoid lumenal 19 kDa protein, chloroplastic [Benincasa hispida])

HSP 1 Score: 424.5 bits (1090), Expect = 6.4e-115
Identity = 224/253 (88.54%), Postives = 231/253 (91.30%), Query Frame = 0


Query: 1   MATAISPLAFFSAGAAATTGAIVPKPSQTPPLPKPLIPVLQSNPSGPLSSLTAPIS---- 60
           MATAI+PLAFFSA AAA+TG   PKP QTPPLPKP IP+LQS P  PLS+ TAPIS    
Sbjct: 1   MATAITPLAFFSA-AAASTGTTAPKPPQTPPLPKPQIPILQSKP--PLSTSTAPISIAAT 60

Query: 61  AIAVAAILSTTPPSLADAGGAFNVYYGTAASAANYGGFGGNASKKDSAEYIYDVPEGWKE 120
            IAVAAILSTTPPSLAD G AFNVYYGTAASAANYGG GGNASKKD+AEYIYDVPEGWKE
Sbjct: 61  TIAVAAILSTTPPSLADTGAAFNVYYGTAASAANYGGLGGNASKKDTAEYIYDVPEGWKE 120

Query: 121 RLVSKVEKGTNGTDSEFYNPKKRKEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIA 180
           RLVSKVEKGTNGTDSEFYNPKKR EKEYLTFLAGIRQL PKDVILNNLALSDVNLQDQIA
Sbjct: 121 RLVSKVEKGTNGTDSEFYNPKKRTEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIA 180

Query: 181 SAEGFSAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWDRDQDML 240
           SAE F AEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEW+RDQDML
Sbjct: 181 SAESFLAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDML 240

Query: 241 RHVHESFKTVGSY 250
           RHVHESFKT+GSY
Sbjct: 241 RHVHESFKTIGSY 250

[Close]

BLAST of Carg13449 vs. ExPASy Swiss-Prot
Match: P82658 (Thylakoid lumenal 19 kDa protein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At3g63540 PE=1 SV=2)

HSP 1 Score: 286.2 bits (731), Expect = 3.6e-76
Identity = 141/216 (65.28%), Postives = 172/216 (79.63%), Query Frame = 0


Query: 35  PLIPVLQSNPSGPLSSLTAPISAIAVAAILSTTP--PSLADAGGAFNVYYGTAASAANYG 94
           P++P   ++  G     T+  +A+A  ++L+  P  P+  +    + +YYGTAASAANYG
Sbjct: 18  PIVPKAIASRLG-----TSLAAALAATSVLTMVPVLPAAGEGNQTYKIYYGTAASAANYG 77

Query: 95  GFGGNASKKDSAEYIYDVPEGWKERLVSKVEKGTNGTDSEFYNPKKRKEKEYLTFLAGIR 154
           G+GGN+ +K SAEY+YDVPEGWKERLVSKVEKGTNGTDSEFYNPKK+ EKEYLTFLAG R
Sbjct: 78  GYGGNSDRKTSAEYVYDVPEGWKERLVSKVEKGTNGTDSEFYNPKKKTEKEYLTFLAGFR 137

Query: 155 QLAPKDVILNNLALSDVNLQDQIASAEGFSAEEKKDENGQIYYVYEIDGAGTHSLISVTC 214
           QLAP+DVILNNLALSDV LQD IA A+   +EE+KDE GQ+YY+YEIDG G HSLI+VTC
Sbjct: 138 QLAPRDVILNNLALSDVELQDLIAGADKVVSEERKDETGQVYYLYEIDGVGKHSLITVTC 197

Query: 215 AKNKLYAHFVNAPTPEWDRDQDMLRHVHESFKTVGS 249
           +KN+LYAHFVNAP PEW+RD D L H+ +SFKTV S
Sbjct: 198 SKNRLYAHFVNAPAPEWNRDHDTLTHLRDSFKTVSS 228

[Close]

BLAST of Carg13449 vs. ExPASy TrEMBL
Match: A0A6J1H7M1 (thylakoid lumenal 19 kDa protein, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111460820 PE=4 SV=1)

HSP 1 Score: 479.9 bits (1234), Expect = 6.2e-132
Identity = 247/249 (99.20%), Postives = 248/249 (99.60%), Query Frame = 0


Query: 1   MATAISPLAFFSAGAAATTGAIVPKPSQTPPLPKPLIPVLQSNPSGPLSSLTAPISAIAV 60
           MATAISPLAFFSAGAAATTGAIVPKPSQTPPLPKPLIPVLQSNPSGPLSSL+APISAIAV
Sbjct: 1   MATAISPLAFFSAGAAATTGAIVPKPSQTPPLPKPLIPVLQSNPSGPLSSLSAPISAIAV 60

Query: 61  AAILSTTPPSLADAGGAFNVYYGTAASAANYGGFGGNASKKDSAEYIYDVPEGWKERLVS 120
           AAILSTTPPSLADAGGAFNVYYGTAASAANYGGFGGNASKKDSAEYIYDVPEGWKERLVS
Sbjct: 61  AAILSTTPPSLADAGGAFNVYYGTAASAANYGGFGGNASKKDSAEYIYDVPEGWKERLVS 120

Query: 121 KVEKGTNGTDSEFYNPKKRKEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIASAEG 180
           KVEKGTNGTDSEFYNPKKRKEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIASAEG
Sbjct: 121 KVEKGTNGTDSEFYNPKKRKEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIASAEG 180

Query: 181 FSAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWDRDQDMLRHVH 240
            SAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWDRDQDMLRHVH
Sbjct: 181 ISAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWDRDQDMLRHVH 240

Query: 241 ESFKTVGSY 250
           ESFKTVGSY
Sbjct: 241 ESFKTVGSY 249

[Close]

BLAST of Carg13449 vs. ExPASy TrEMBL
Match: A0A6J1KV54 (thylakoid lumenal 19 kDa protein, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111497869 PE=4 SV=1)

HSP 1 Score: 468.8 bits (1205), Expect = 1.4e-128
Identity = 242/249 (97.19%), Postives = 243/249 (97.59%), Query Frame = 0


Query: 1   MATAISPLAFFSAGAAATTGAIVPKPSQTPPLPKPLIPVLQSNPSGPLSSLTAPISAIAV 60
           MATAISPLAFFSAGAAATTGAIVPKPSQTPPLPKPLIP LQSN  GPLSSLTAPISAIAV
Sbjct: 1   MATAISPLAFFSAGAAATTGAIVPKPSQTPPLPKPLIPFLQSNTPGPLSSLTAPISAIAV 60

Query: 61  AAILSTTPPSLADAGGAFNVYYGTAASAANYGGFGGNASKKDSAEYIYDVPEGWKERLVS 120
           AAILSTTPP LA  GGAFNVYYGTAASAANYGGFGGNASKKDSAEYIYDVPEGWKERLVS
Sbjct: 61  AAILSTTPPLLAATGGAFNVYYGTAASAANYGGFGGNASKKDSAEYIYDVPEGWKERLVS 120

Query: 121 KVEKGTNGTDSEFYNPKKRKEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIASAEG 180
           KVEKGTNGTDSEFYNPKKRKEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIASAEG
Sbjct: 121 KVEKGTNGTDSEFYNPKKRKEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIASAEG 180

Query: 181 FSAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWDRDQDMLRHVH 240
           FSAEE+KDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWDRDQDMLRHVH
Sbjct: 181 FSAEERKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWDRDQDMLRHVH 240

Query: 241 ESFKTVGSY 250
           ESFKTVGSY
Sbjct: 241 ESFKTVGSY 249

[Close]

BLAST of Carg13449 vs. ExPASy TrEMBL
Match: A0A5D3CG07 (Thylakoid lumenal 19 kDa protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G00930 PE=4 SV=1)

HSP 1 Score: 404.8 bits (1039), Expect = 2.6e-109
Identity = 213/253 (84.19%), Postives = 225/253 (88.93%), Query Frame = 0


Query: 1   MATAISPLAFFSAGAAATTGAIVPKPSQTPPLPKPLIPVLQSNPSGPLSSLTAPIS---- 60
           MATAI+PLAF ++  AA+TG   PK  QT PLPKP IP+LQS    PLS  TAPIS    
Sbjct: 1   MATAIAPLAFLTS-TAASTGTTAPKSPQTSPLPKPQIPILQS--KSPLSISTAPISIAAT 60

Query: 61  AIAVAAILSTTPPSLADAGGAFNVYYGTAASAANYGGFGGNASKKDSAEYIYDVPEGWKE 120
           AIAVAAIL+T PPSLAD G AFNVYYGTAASAANYGG GGNA+KKD+AEY+YDVPEGWKE
Sbjct: 61  AIAVAAILNTAPPSLADTGAAFNVYYGTAASAANYGGLGGNANKKDTAEYVYDVPEGWKE 120

Query: 121 RLVSKVEKGTNGTDSEFYNPKKRKEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIA 180
           RLVSKVEKGTNGTDSEFYNPKKR EKEYLTFLAGIRQL PKDVILNNLALSDVNLQDQIA
Sbjct: 121 RLVSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIA 180

Query: 181 SAEGFSAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWDRDQDML 240
           SAE F A+EKKDENGQ+YYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEW+RDQDML
Sbjct: 181 SAESFLADEKKDENGQVYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDML 240

Query: 241 RHVHESFKTVGSY 250
           RHVHESFKTVGSY
Sbjct: 241 RHVHESFKTVGSY 250

[Close]

BLAST of Carg13449 vs. ExPASy TrEMBL
Match: A0A1S3CES2 (thylakoid lumenal 19 kDa protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103499916 PE=4 SV=1)

HSP 1 Score: 404.8 bits (1039), Expect = 2.6e-109
Identity = 213/253 (84.19%), Postives = 225/253 (88.93%), Query Frame = 0


Query: 1   MATAISPLAFFSAGAAATTGAIVPKPSQTPPLPKPLIPVLQSNPSGPLSSLTAPIS---- 60
           MATAI+PLAF ++  AA+TG   PK  QT PLPKP IP+LQS    PLS  TAPIS    
Sbjct: 1   MATAIAPLAFLTS-TAASTGTTAPKSPQTSPLPKPQIPILQS--KSPLSISTAPISIAAT 60

Query: 61  AIAVAAILSTTPPSLADAGGAFNVYYGTAASAANYGGFGGNASKKDSAEYIYDVPEGWKE 120
           AIAVAAIL+T PPSLAD G AFNVYYGTAASAANYGG GGNA+KKD+AEY+YDVPEGWKE
Sbjct: 61  AIAVAAILNTAPPSLADTGAAFNVYYGTAASAANYGGLGGNANKKDTAEYVYDVPEGWKE 120

Query: 121 RLVSKVEKGTNGTDSEFYNPKKRKEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIA 180
           RLVSKVEKGTNGTDSEFYNPKKR EKEYLTFLAGIRQL PKDVILNNLALSDVNLQDQIA
Sbjct: 121 RLVSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIA 180

Query: 181 SAEGFSAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWDRDQDML 240
           SAE F A+EKKDENGQ+YYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEW+RDQDML
Sbjct: 181 SAESFLADEKKDENGQVYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDML 240

Query: 241 RHVHESFKTVGSY 250
           RHVHESFKTVGSY
Sbjct: 241 RHVHESFKTVGSY 250

[Close]

BLAST of Carg13449 vs. ExPASy TrEMBL
Match: A0A6J1JN94 (thylakoid lumenal 19 kDa protein, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111488417 PE=4 SV=1)

HSP 1 Score: 403.3 bits (1035), Expect = 7.4e-109
Identity = 214/249 (85.94%), Postives = 224/249 (89.96%), Query Frame = 0


Query: 1   MATAISPLAFFSAGAAATTGAIVPKPSQTPPLPKPLIPVLQSNPSGPLSSLTAPISAIAV 60
           MATAISPLAFFSA AAA+TG   PK  Q P     +IP+LQS PS  LSSLTA  SAIA+
Sbjct: 24  MATAISPLAFFSA-AAASTGTTAPKLPQKP----QIIPILQSKPS--LSSLTAACSAIAI 83

Query: 61  AAILSTTPPSLADAGGAFNVYYGTAASAANYGGFGGNASKKDSAEYIYDVPEGWKERLVS 120
           AAI+ST+PPSLADAG AFNVYYGTAASAANYGG GGNA KKDSAEY+YDVP+GWKERLVS
Sbjct: 84  AAIVSTSPPSLADAGPAFNVYYGTAASAANYGGLGGNADKKDSAEYVYDVPDGWKERLVS 143

Query: 121 KVEKGTNGTDSEFYNPKKRKEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIASAEG 180
           KVEKGTNGTDSEFYNPKKR EKEYLTFLAGIRQL PKDVILNNLALSDVNLQDQIASAE 
Sbjct: 144 KVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAES 203

Query: 181 FSAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWDRDQDMLRHVH 240
           FSAEEKKDENGQIYY YEID AGTHSLISVTCAKNKLYAHFVNAPTPEW+RDQDMLRHVH
Sbjct: 204 FSAEEKKDENGQIYYEYEIDSAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHVH 263

Query: 241 ESFKTVGSY 250
           ESFKT+GSY
Sbjct: 264 ESFKTIGSY 265

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BLAST of Carg13449 vs. TAIR 10
Match: AT3G63540.1 (Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein )

HSP 1 Score: 231.5 bits (589), Expect = 7.4e-61
Identity = 109/140 (77.86%), Postives = 122/140 (87.14%), Query Frame = 0


Query: 109 DVPEGWKERLVSKVEKGTNGTDSEFYNPKKRKEKEYLTFLAGIRQLAPKDVILNNLALSD 168
           +V EGWKERLVSKVEKGTNGTDSEFYNPKK+ EKEYLTFLAG RQLAP+DVILNNLALSD
Sbjct: 3   EVEEGWKERLVSKVEKGTNGTDSEFYNPKKKTEKEYLTFLAGFRQLAPRDVILNNLALSD 62

Query: 169 VNLQDQIASAEGFSAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPE 228
           V LQD IA A+   +EE+KDE GQ+YY+YEIDG G HSLI+VTC+KNKLYAHFVNAP PE
Sbjct: 63  VELQDLIAGADKVVSEERKDETGQVYYLYEIDGVGKHSLITVTCSKNKLYAHFVNAPAPE 122

Query: 229 WDRDQDMLRHVHESFKTVGS 249
           W+RD D L H+ +SFKTV S
Sbjct: 123 WNRDHDTLTHLRDSFKTVSS 142

The following BLAST results are available for this feature:

BLAST of Carg13449 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7025659.1	8.9e-133	100.00	Thylakoid lumenal 19 kDa protein, chloroplastic [Cucurbita argyrosperma subsp. a...	[more]
XP_022959905.1	1.3e-131	99.20	thylakoid lumenal 19 kDa protein, chloroplastic-like [Cucurbita moschata]	[more]
XP_023513479.1	8.4e-131	98.80	thylakoid lumenal 19 kDa protein, chloroplastic-like [Cucurbita pepo subsp. pepo...	[more]
XP_023004635.1	3.0e-128	97.19	thylakoid lumenal 19 kDa protein, chloroplastic-like [Cucurbita maxima]	[more]
XP_038896859.1	6.4e-115	88.54	thylakoid lumenal 19 kDa protein, chloroplastic [Benincasa hispida]	[more]

BLAST of Carg13449 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P82658	3.6e-76	65.28	Thylakoid lumenal 19 kDa protein, chloroplastic OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Carg13449 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H7M1	6.2e-132	99.20	thylakoid lumenal 19 kDa protein, chloroplastic-like OS=Cucurbita moschata OX=36...	[more]
A0A6J1KV54	1.4e-128	97.19	thylakoid lumenal 19 kDa protein, chloroplastic-like OS=Cucurbita maxima OX=3661...	[more]
A0A5D3CG07	2.6e-109	84.19	Thylakoid lumenal 19 kDa protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A1S3CES2	2.6e-109	84.19	thylakoid lumenal 19 kDa protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A6J1JN94	7.4e-109	85.94	thylakoid lumenal 19 kDa protein, chloroplastic-like OS=Cucurbita maxima OX=3661...	[more]

BLAST of Carg13449 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G63540.1	7.4e-61	77.86	Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002683	PsbP, C-terminal	PFAM	PF01789	PsbP	coord: 104..244 e-value: 2.2E-10 score: 40.8
None	No IPR available	GENE3D	3.40.1000.10	Mog1/PsbP, alpha/beta/alpha sandwich	coord: 88..245 e-value: 1.0E-16 score: 63.3
None	No IPR available	PANTHER	PTHR31407	FAMILY NOT NAMED	coord: 2..246
None	No IPR available	PANTHER	PTHR31407:SF20	THYLAKOID LUMENAL 19 KDA PROTEIN, CHLOROPLASTIC	coord: 2..246
IPR016123	Mog1/PsbP, alpha/beta/alpha sandwich	SUPERFAMILY	55724	Mog1p/PsbP-like	coord: 103..245

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg13449-RA	Carg13449-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0019898	extrinsic component of membrane
cellular_component	GO:0009654	photosystem II oxygen evolving complex
cellular_component	GO:0009523	photosystem II
molecular_function	GO:0005509	calcium ion binding