Carg13412 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg13412
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionGlutamine synthetase
LocationCarg_Chr08: 2647352 .. 2652920 (-)
RNA-Seq ExpressionCarg13412
SyntenyCarg13412
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAGGTCTGTTGGCAGTCCCCTATTAAACCCCTCACGTCCGGCCGCCTTCTCTCTCACCAAGCACCATTTCATTTCAACGCTTCTCTTCTCTCTCTCTCTCTCTCTCTCTCTTTCGCTCCCGCTTTTTCCTCTGCTTCACTCGCCATGTCCTTCCTCTCTGACCTCATCAATCTCAACCTCACTGATTCTACCGACAAGATCATTGCCGAATACGTATGGTAATTGTTTTCCTCTCTTCTTTGCTTTCTCTGTTTTCTTTTCATGATTCTTTGCGGTTTTGTTCATTTTTTGTTTTGTTTCTTGCAGGATTGGAGGATCGGGGCTCGATTTGAGAAGCAAAGCTAGGGTACGGACTGCTTCTTTCTTTTTTTCTCGTGTTTGTTCGGTGTTTGGATCAATATCTGATTGGTTTCGCTGTTTGTGATGTTGATTCATTAGTTGATCTCTGTTTTTTGTTCGAGAGCTTGGAATCGATTGCGTGTGTGTGTGTGTTCTACGTTTTTTTTGGAGAGATTTCTTGATGTTTCAACTCGTTTCGAAATTTGTTGGTGCTTATAATTTTTCTTCAGATTTCGAATGTTCTTACCTCTGATCGTGTATTTTTATTTTTAATTTTTTGCCTGTTTCTAATCGTTCGGGAAATTATCGGTACAGATCATATATGCAGATTTCAAGTGTTTCTCAGTTTTTGTTATTATTTTTTTCTTCTTTCTTCGACTTTTTCTTTGAACTTCGGAATCGATCATACTGTTGAGGAGTTGTTCAGGAGAGATTTTCATGTTGTATCGACTTGTTCGAGAAATTAGTAGTACGGCACACGGCATTTCTTCAAATTTAGAGTGTTTGTCTCTCTTTTTTTAAAAGATTTCTTCAACTTTTCACTTGCGAGTTCAAAATTGGTTGTGCGTTTGAATAGTTTTCTGGAGAGATTTTCTTGCCGCATCTACTCGTTTAAGAAATTTTCAGTACAGTACGGATCATTTATTCAGATTTCGAATGTATCTCCTCTTTTCTCGTTCGTCGACGTTTTGTTTGAGAGTTGAAAATCGGTCGTTCTTCTGCAAAGCTTTTCCGTTTCATATTTCTTGCTATGTTCGTACAGATCGTTCCTTAGGATTCTAAATGACACTTTAAAAACTTTTTTCAGACTCTTCCGGGACCGGTGACGGATCCAGCGAAGCTCCCGAAGTGGAACTACGACGGTTCCAGTACGAATCAAGCCCCCGGAGACGACAGCGAAGTCATCTTATAGTATGTACAACGCCCCCACCCTATTACCATACGCCACCTATCCCTACCGATGAAGATTCTACACGGACTGTAGAATCTTTGACTTTTTTGCTCTTATCTGAAATTTCCGCATTTAACGGCGTTAGTCTTGTTTGACTGTTAACAGTCCCCAAGCTATTTTCAAGGATCCATTCAGAAGAGGAAACAACATCCTGGTATGGTGAATTCACCGGTGTATTTTTGGTATTTTCTAAGTGAATACAAAGGGTAATTTCGTCTTTTCGTTTGATAATGACGTCGACATAGGTTATGTGCGATGCTTATACGCCATCTGGCGAGCCGATTCCGACGAACAAGAGATTCAACGCCGCCAAGATTTTTAGCTACGCCGACGTCGTTGCGGAGGAACCTTGGTAATCCTATTAATTACTTTAAAAAAATTACTTTCTTATTCCCTTTACTTATAAAAAGAATGAGAATAGGAATATAAAAATTATTTTAATCAGGAATTATATTCGAATCTCGTTCATTTTCTATATTTATACATTTCTGTTTTGGGACGAATTTCACATTTAATGTAAATTAATTAACATAACCAGTAACATTCCCATTTAATAAATGGGTTGTGTTTCGCATTTCAAATTTTCAAATTTTCAAAAAACTTTGAAAAAAAATCTAAAAAGTTATTTCAAATCCTATACCTAATCTTCTGCTTTTTCCATTTGTAAAGACATTCATGGACACCTCTCCTCTCCCCTTGGGCTTGGAACTTGGGAACTGTGACCTTTCTCATGAGTGGGGTTGGTGTTCAAATATAAAATTGTTAGTTGTCAAGAGGGTGTGATAAAATGTCGTATTGGATCAGTTATTAAAATGCGTCCGCCGTCTGCTTTTGACTGGAACTTCTCGCTACCATGAAATTCCTTGGTTTAATAATTGCATTAGGTATTAAATTTGCAATTGTGCGTATTAAATTAACTGAAAAAGTTTGGAACCTAACAAGCAATGGTGTCCCATAATCAGCAAAAGCTGGATGTTAGGCCTCGCCATGTATGCTTCCGTACACAATAATTTATTTTATCACATTTCAGCACTAAAATAACGCATTTCGATTTCTCTCGTGCTCCACTTTCACATCATATTTTTCTTTTCTGTTTCTCTTATGCTAAATGATATCCTTTTTCCTTGATTTATTCATGAATTATAACTATAAGTAAATGGATTATGGACATAGACACAGAGATTATTGATTCGATGGTATGATTCATTTTAAGATGTGTTTTGATGGTGATGATAGGTATGGAATTGAGCAGGAGTACACTCTACTCCAAAAGGACGTCCACTGGCCACTCGGTTGGCCTGTAGGTGGCTTCCCAGGCCCACAGGTACCCTTAATGCTGTTTAATCATCATCATTAAAACTGCTTCTCTTCACCCGATTGTGTAGATATTTTAATGAATAGTTCTTTCATAACCAAAAACAATTATGAGGGTCGGAGAAACAAAATTCAAACAATTTCAAGTCGACTGGACAGAGTTTTTATTGGTCTATTATTATTAAGAACAATTTTCGATTATCAATAAGGTTATCTACTAAAATATTAGTAAACTTGTGGAAAGAGGACAAACAATTTTTAACAATAATGATTTAAAAATAAATAAATAAATAGGTATATACCCAAAGTGATGTCAGATCAGCATTTCTTTTAGAAATAGTGTAAGAAAATGGTTATTAAACAATAACTAAGGCTGTAGTTTTAGTAAAAACTATTTTAGGACCTCGAGTATCGTTTACTCAAAATTATCTGTTTAATTGGAATGTGTACAAAAATGGTTTGGAAAAAAAGAATCCTAAATGTTAGATAATTATCTGAATCGGTGCCATGCAGGGTCCTTACTATTGTGGCACAGGAGCAGACAAGGCCTTCGGTCGAGATATTGTAGACGCTCACTACAAGGCTTGTCTTTATGCCGGAGTCAATATCAGTGGAATCAACGGTGAAGTCATGCCCGGTCAGGTGCGTCACCATCGTAATATCCAGTGTCTAAGCACACAGATAATATCCGATTTTATTTATTTATTCTCTCCTTAAAATGATTCCCATTTTTTTGTTTTGTTCTGTTCTGTTTTGTTTGGACAGTGGGAATACCAAGTCGGTCCAACCGTTGGTATTGCTGCTGGTGATCAAGTATGGATCTCCCGATACATCCTCGAGGTACACTCTAATTCCAATATGAAAAAACATACTTTCTGAAAGCGATGGTGACATTGTATAATATTTAGTATATTATAATTAGAGTAATTAGAATATGGTTTTTTAAAGTTACATAGTGATTATATACGTTTTGTTTATTTGAGATGGTATGGGTGTTAATTACTGGAAGTAAACAACGACGAGAAATGAAGTAGGAGAACTAGTAAAATGAATTTATTTATCACTTCCCGCTCATCTGTTATTATGTTTTGTTGCCTCTCAGTTCCTTACTATTATATATATCGATCACCAAATAAGCCCATATATACACAGTTATTAAGGGTGATGTTGATGTACTAATGTCTCGAATCAAGTATGTAAAGATCGTGACCAACTAAAATTTAGTGGGTATTAATTAGTAAATACAATGGATTAATTCATAGTAGGTAGATTAAACATTACGTTACATCTAATATCTTCCATTAGTAGTGTTATATTGCCCTAAATTATTTGAATTTGAATAGGCGAGATTGCTCCTTTCCATTGACGTCTTTCTTAATACAATCTACGCATTTGGAACATTAGGATTGCCAGATGATTTAGGTAAATTGTATGTGTCCGGTTCTGTTTCTTCTATTTTGGACTTCACTCTACTTCTCTAATCAAATTTCATGAGTAGAAATAAATTCAAGTTTTTCAAATCGTGTTATTTGTAAATTGTAAAACGTTTCGTCTTTAAGATAATTGATAATCCCTTTTTAGTGGGTTTCTTTTTAGTTTGTTTTAGGTTCTTGCAGAAAATGGCTTTGTTTAGAACTCATAAGACTCCCAATATACAGAACAAATCCGCACAAAAGGATTATGACGGTTAAGTTTGAATCTCTACGTAGGGTAAAACATTAATAATTCAATGATTTATATTAAAGTAATGGACCAATGAATTCCCTTTGTAATTGAGATTAGGTCCAATATTTTGTATGTGTATCTCATATGAAAATGTCCAAATCTTTAATTAGAGAGATGCTGGAGATATTGCGTAAAAAACTGCACAATACGGACAAAGCAATATGAGAAGAAAGAGGACAAAGAGAAGAATCTTCTTTTGAGAAGAAATAGGAGGGTGGGGACCCACACCACGCATTATGGAAGACAGACTAAAATTTTTATAAAACCAAATATAATAATTAATAAAAAAAAAAAACTCAACGGGCACGCCCGAGAAGAAAATTAACTATGTGAAATTAAATTAACACACCATAAATAAAGAACCAGTGGAATAAAAGCGCAGGGGTGTTGTCTGGAGAGCGTTATCGCTTTTCGCGATTCTCAGGGCTTGTCCCCATCATCATCGCCATTTCGGTATTGCATGCTCTTGTAATTGAACCTCACCATGTTTCTAATCCTTTACAAGTTTTAATTCGTATTTTTATATTTTTATTTATCAAAAACACTTCTTTCTTTTATCATTTTGGTTGTCTATGTTCTCTCGTATCTTTCTTGGTCTCTCTCTCGCTATCTATTCTGTTTAACATTTACTCGACTACTTAAACTCTGTAGTGTCAAATGAATGCAGATTTAACGTTATACGGTCAATAGTGTGTGGTATTACAAGTCTGAGAAATATTGATTTGGAACAGTTTTTCTTTTGTCCTACTTGATATTTGGGAGTTTTGATCGGTAAGAATGGATTGTTTAGAGCTGGTTCGCCTTGGCAAAGATTGCATTAGGAGAACGTGGGCTCATGGGGGAGGAGTCATGAGCTGCGAGATCACGTATGTTTCTCTCATCAGAATACGAATTTATTCACACCTAACATATGGATTTGTTATCTAAAGACAGCAAATCTTGCAACAGAAGATGGCCTCGCCCATTGGTTGCCTCTTTCGAAGCTAACTGGATAGCTTCCTGGATGGGACGAGCTGTGGTAATCTGGAAGACGCTGTCAGAAGGGCTTGGAGGGTGTTTGCACCAAACCGTGTTGAACTGACATCCTGGGGAAATGTTCTTTAGGAATTTCGGTGGGCTCCAGGCTTGCAACGTCTCCCTGTATTTTCAGGTGCCAGACAATTCAAGCCAGGATGCGATCGCGTTGTTGTTGCTTTGTTCAGGCTATACCGAGGGTACTGGCACGCGAACTACTTGTAG

mRNA sequence

AAGGTCTGTTGGCAGTCCCCTATTAAACCCCTCACGTCCGGCCGCCTTCTCTCTCACCAAGCACCATTTCATTTCAACGCTTCTCTTCTCTCTCTCTCTCTCTCTCTCTCTTTCGCTCCCGCTTTTTCCTCTGCTTCACTCGCCATGTCCTTCCTCTCTGACCTCATCAATCTCAACCTCACTGATTCTACCGACAAGATCATTGCCGAATACGTATGGATTGGAGGATCGGGGCTCGATTTGAGAAGCAAAGCTAGGACTCTTCCGGGACCGGTGACGGATCCAGCGAAGCTCCCGAAGTGGAACTACGACGGTTCCAGTACGAATCAAGCCCCCGGAGACGACAGCGAAGTCATCTTATATCCCCAAGCTATTTTCAAGGATCCATTCAGAAGAGGAAACAACATCCTGGCGAGATTGCTCCTTTCCATTGACGTCTTTCTTAATACAATCTACGCATTTGGAACATTAGGATTGCCAGATGATTTAGAGCTGGTTCGCCTTGGCAAAGATTGCATTAGGAGAACGTGGGCTCATGGGGGAGGAGTCATGAGCTGCGAGATCACCAAATCTTGCAACAGAAGATGGCCTCGCCCATTGGTTGCCTCTTTCGAAGCTAACTGGATAGCTTCCTGGATGGGACGAGCTGTGGAATTTCGGTGGGCTCCAGGCTTGCAACGTCTCCCTGTATTTTCAGGTGCCAGACAATTCAAGCCAGGATGCGATCGCGTTGTTGTTGCTTTGTTCAGGCTATACCGAGGGTACTGGCACGCGAACTACTTGTAG

Coding sequence (CDS)

ATGTCCTTCCTCTCTGACCTCATCAATCTCAACCTCACTGATTCTACCGACAAGATCATTGCCGAATACGTATGGATTGGAGGATCGGGGCTCGATTTGAGAAGCAAAGCTAGGACTCTTCCGGGACCGGTGACGGATCCAGCGAAGCTCCCGAAGTGGAACTACGACGGTTCCAGTACGAATCAAGCCCCCGGAGACGACAGCGAAGTCATCTTATATCCCCAAGCTATTTTCAAGGATCCATTCAGAAGAGGAAACAACATCCTGGCGAGATTGCTCCTTTCCATTGACGTCTTTCTTAATACAATCTACGCATTTGGAACATTAGGATTGCCAGATGATTTAGAGCTGGTTCGCCTTGGCAAAGATTGCATTAGGAGAACGTGGGCTCATGGGGGAGGAGTCATGAGCTGCGAGATCACCAAATCTTGCAACAGAAGATGGCCTCGCCCATTGGTTGCCTCTTTCGAAGCTAACTGGATAGCTTCCTGGATGGGACGAGCTGTGGAATTTCGGTGGGCTCCAGGCTTGCAACGTCTCCCTGTATTTTCAGGTGCCAGACAATTCAAGCCAGGATGCGATCGCGTTGTTGTTGCTTTGTTCAGGCTATACCGAGGGTACTGGCACGCGAACTACTTGTAG

Protein sequence

MSFLSDLINLNLTDSTDKIIAEYVWIGGSGLDLRSKARTLPGPVTDPAKLPKWNYDGSSTNQAPGDDSEVILYPQAIFKDPFRRGNNILARLLLSIDVFLNTIYAFGTLGLPDDLELVRLGKDCIRRTWAHGGGVMSCEITKSCNRRWPRPLVASFEANWIASWMGRAVEFRWAPGLQRLPVFSGARQFKPGCDRVVVALFRLYRGYWHANYL
Homology
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BLAST of Carg13412 vs. NCBI nr
Match: KAG7025622.1 (hypothetical protein SDJN02_12119 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 453.8 bits (1166), Expect = 8.5e-124
Identity = 213/213 (100.00%), Postives = 213/213 (100.00%), Query Frame = 0 

Query: 1   MSFLSDLINLNLTDSTDKIIAEYVWIGGSGLDLRSKARTLPGPVTDPAKLPKWNYDGSST 60
           MSFLSDLINLNLTDSTDKIIAEYVWIGGSGLDLRSKARTLPGPVTDPAKLPKWNYDGSST
Sbjct: 1   MSFLSDLINLNLTDSTDKIIAEYVWIGGSGLDLRSKARTLPGPVTDPAKLPKWNYDGSST 60

Query: 61  NQAPGDDSEVILYPQAIFKDPFRRGNNILARLLLSIDVFLNTIYAFGTLGLPDDLELVRL 120
           NQAPGDDSEVILYPQAIFKDPFRRGNNILARLLLSIDVFLNTIYAFGTLGLPDDLELVRL
Sbjct: 61  NQAPGDDSEVILYPQAIFKDPFRRGNNILARLLLSIDVFLNTIYAFGTLGLPDDLELVRL 120

Query: 121 GKDCIRRTWAHGGGVMSCEITKSCNRRWPRPLVASFEANWIASWMGRAVEFRWAPGLQRL 180
           GKDCIRRTWAHGGGVMSCEITKSCNRRWPRPLVASFEANWIASWMGRAVEFRWAPGLQRL
Sbjct: 121 GKDCIRRTWAHGGGVMSCEITKSCNRRWPRPLVASFEANWIASWMGRAVEFRWAPGLQRL 180

Query: 181 PVFSGARQFKPGCDRVVVALFRLYRGYWHANYL 214
           PVFSGARQFKPGCDRVVVALFRLYRGYWHANYL
Sbjct: 181 PVFSGARQFKPGCDRVVVALFRLYRGYWHANYL 213

[Close]
BLAST of Carg13412 vs. NCBI nr
Match: KAG6593271.1 (hypothetical protein SDJN03_12747, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 187.2 bits (474), Expect = 1.5e-43
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0 

Query: 1  MSFLSDLINLNLTDSTDKIIAEYVWIGGSGLDLRSKARTLPGPVTDPAKLPKWNYDGSST 60
          MSFLSDLINLNLTDSTDKIIAEYVWIGGSGLDLRSKARTLPGPVTDPAKLPKWNYDGSST
Sbjct: 1  MSFLSDLINLNLTDSTDKIIAEYVWIGGSGLDLRSKARTLPGPVTDPAKLPKWNYDGSST 60

Query: 61 NQAPGDDSEVILYPQAIFKDPFRRGNNIL 90
          NQAPGDDSEVILYPQAIFKDPFRRGNNIL
Sbjct: 61 NQAPGDDSEVILYPQAIFKDPFRRGNNIL 89

[Close]
BLAST of Carg13412 vs. NCBI nr
Match: XP_022960252.1 (glutamine synthetase nodule isozyme-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 184.9 bits (468), Expect = 7.3e-43
Identity = 88/89 (98.88%), Postives = 88/89 (98.88%), Query Frame = 0 

Query: 1  MSFLSDLINLNLTDSTDKIIAEYVWIGGSGLDLRSKARTLPGPVTDPAKLPKWNYDGSST 60
          MS LSDLINLNLTDSTDKIIAEYVWIGGSGLDLRSKARTLPGPVTDPAKLPKWNYDGSST
Sbjct: 1  MSLLSDLINLNLTDSTDKIIAEYVWIGGSGLDLRSKARTLPGPVTDPAKLPKWNYDGSST 60

Query: 61 NQAPGDDSEVILYPQAIFKDPFRRGNNIL 90
          NQAPGDDSEVILYPQAIFKDPFRRGNNIL
Sbjct: 61 NQAPGDDSEVILYPQAIFKDPFRRGNNIL 89

[Close]
BLAST of Carg13412 vs. NCBI nr
Match: XP_022960251.1 (glutamine synthetase nodule isozyme-like isoform X1 [Cucurbita moschata] >XP_023515061.1 glutamine synthetase nodule isozyme-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 184.9 bits (468), Expect = 7.3e-43
Identity = 88/89 (98.88%), Postives = 88/89 (98.88%), Query Frame = 0 

Query: 1  MSFLSDLINLNLTDSTDKIIAEYVWIGGSGLDLRSKARTLPGPVTDPAKLPKWNYDGSST 60
          MS LSDLINLNLTDSTDKIIAEYVWIGGSGLDLRSKARTLPGPVTDPAKLPKWNYDGSST
Sbjct: 1  MSLLSDLINLNLTDSTDKIIAEYVWIGGSGLDLRSKARTLPGPVTDPAKLPKWNYDGSST 60

Query: 61 NQAPGDDSEVILYPQAIFKDPFRRGNNIL 90
          NQAPGDDSEVILYPQAIFKDPFRRGNNIL
Sbjct: 61 NQAPGDDSEVILYPQAIFKDPFRRGNNIL 89

[Close]
BLAST of Carg13412 vs. NCBI nr
Match: XP_023515062.1 (glutamine synthetase nodule isozyme-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 184.9 bits (468), Expect = 7.3e-43
Identity = 88/89 (98.88%), Postives = 88/89 (98.88%), Query Frame = 0 

Query: 1  MSFLSDLINLNLTDSTDKIIAEYVWIGGSGLDLRSKARTLPGPVTDPAKLPKWNYDGSST 60
          MS LSDLINLNLTDSTDKIIAEYVWIGGSGLDLRSKARTLPGPVTDPAKLPKWNYDGSST
Sbjct: 1  MSLLSDLINLNLTDSTDKIIAEYVWIGGSGLDLRSKARTLPGPVTDPAKLPKWNYDGSST 60

Query: 61 NQAPGDDSEVILYPQAIFKDPFRRGNNIL 90
          NQAPGDDSEVILYPQAIFKDPFRRGNNIL
Sbjct: 61 NQAPGDDSEVILYPQAIFKDPFRRGNNIL 89

[Close]
BLAST of Carg13412 vs. ExPASy Swiss-Prot
Match: P04771 (Glutamine synthetase PR-2 OS=Phaseolus vulgaris OX=3885 PE=2 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 1.3e-42
Identity = 80/89 (89.89%), Postives = 87/89 (97.75%), Query Frame = 0 

Query: 1  MSFLSDLINLNLTDSTDKIIAEYVWIGGSGLDLRSKARTLPGPVTDPAKLPKWNYDGSST 60
          MS LSDLINLNL++ST+KIIAEY+W+GGSG+DLRSKARTLPGPV DPAKLPKWNYDGSST
Sbjct: 1  MSLLSDLINLNLSESTEKIIAEYIWVGGSGMDLRSKARTLPGPVDDPAKLPKWNYDGSST 60

Query: 61 NQAPGDDSEVILYPQAIFKDPFRRGNNIL 90
          +QAPGDDSEVILYPQAIFKDPFRRGNNIL
Sbjct: 61 DQAPGDDSEVILYPQAIFKDPFRRGNNIL 89

[Close]
BLAST of Carg13412 vs. ExPASy Swiss-Prot
Match: P12424 (Glutamine synthetase OS=Nicotiana plumbaginifolia OX=4092 PE=2 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 2.2e-42
Identity = 81/89 (91.01%), Postives = 86/89 (96.63%), Query Frame = 0 

Query: 1  MSFLSDLINLNLTDSTDKIIAEYVWIGGSGLDLRSKARTLPGPVTDPAKLPKWNYDGSST 60
          MS LSDLINLNL+DST+KIIAEY+WIGGSG+DLRSKARTL GPVTDPAKLPKWNYDGSST
Sbjct: 1  MSLLSDLINLNLSDSTEKIIAEYIWIGGSGMDLRSKARTLSGPVTDPAKLPKWNYDGSST 60

Query: 61 NQAPGDDSEVILYPQAIFKDPFRRGNNIL 90
           QAPG+DSEVILYPQAIFKDPFRRGNNIL
Sbjct: 61 GQAPGEDSEVILYPQAIFKDPFRRGNNIL 89

[Close]
BLAST of Carg13412 vs. ExPASy Swiss-Prot
Match: Q56WN1 (Glutamine synthetase cytosolic isozyme 1-1 OS=Arabidopsis thaliana OX=3702 GN=GLN1-1 PE=1 SV=2)

HSP 1 Score: 173.3 bits (438), Expect = 2.9e-42
Identity = 78/89 (87.64%), Postives = 87/89 (97.75%), Query Frame = 0 

Query: 1  MSFLSDLINLNLTDSTDKIIAEYVWIGGSGLDLRSKARTLPGPVTDPAKLPKWNYDGSST 60
          MS +SDLINLNL+DSTDKIIAEY+W+GGSG+D+RSKARTLPGPVTDP++LPKWNYDGSST
Sbjct: 1  MSLVSDLINLNLSDSTDKIIAEYIWVGGSGMDMRSKARTLPGPVTDPSQLPKWNYDGSST 60

Query: 61 NQAPGDDSEVILYPQAIFKDPFRRGNNIL 90
           QAPG+DSEVILYPQAIFKDPFRRGNNIL
Sbjct: 61 GQAPGEDSEVILYPQAIFKDPFRRGNNIL 89

[Close]
BLAST of Carg13412 vs. ExPASy Swiss-Prot
Match: P07694 (Glutamine synthetase root isozyme A OS=Pisum sativum OX=3888 GN=GS3A PE=2 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 3.8e-42
Identity = 79/89 (88.76%), Postives = 86/89 (96.63%), Query Frame = 0 

Query: 1  MSFLSDLINLNLTDSTDKIIAEYVWIGGSGLDLRSKARTLPGPVTDPAKLPKWNYDGSST 60
          MS LSDLIN NL+DST+KIIAEY+W+GGSG+D+RSKARTLPGPV+DPAKLPKWNYDGSST
Sbjct: 1  MSSLSDLINFNLSDSTEKIIAEYIWVGGSGIDIRSKARTLPGPVSDPAKLPKWNYDGSST 60

Query: 61 NQAPGDDSEVILYPQAIFKDPFRRGNNIL 90
          NQAPG DSEVILYPQAIFKDPFRRGNNIL
Sbjct: 61 NQAPGKDSEVILYPQAIFKDPFRRGNNIL 89

[Close]
BLAST of Carg13412 vs. ExPASy Swiss-Prot
Match: P32289 (Glutamine synthetase nodule isozyme OS=Vigna aconitifolia OX=3918 PE=2 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 3.8e-42
Identity = 79/89 (88.76%), Postives = 87/89 (97.75%), Query Frame = 0 

Query: 1  MSFLSDLINLNLTDSTDKIIAEYVWIGGSGLDLRSKARTLPGPVTDPAKLPKWNYDGSST 60
          MS LSDLINLNL+D+T+KIIAEY+WIGGSGLDLRSKARTLPGPV+DP+KLPKWNYDGSST
Sbjct: 1  MSLLSDLINLNLSDTTEKIIAEYIWIGGSGLDLRSKARTLPGPVSDPSKLPKWNYDGSST 60

Query: 61 NQAPGDDSEVILYPQAIFKDPFRRGNNIL 90
           QAPG+DSEVI+YPQAIFKDPFRRGNNIL
Sbjct: 61 GQAPGEDSEVIIYPQAIFKDPFRRGNNIL 89

[Close]
BLAST of Carg13412 vs. ExPASy TrEMBL
Match: A0A6J1H6X7 (Glutamine synthetase OS=Cucurbita moschata OX=3662 GN=LOC111461050 PE=3 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 3.5e-43
Identity = 88/89 (98.88%), Postives = 88/89 (98.88%), Query Frame = 0 

Query: 1  MSFLSDLINLNLTDSTDKIIAEYVWIGGSGLDLRSKARTLPGPVTDPAKLPKWNYDGSST 60
          MS LSDLINLNLTDSTDKIIAEYVWIGGSGLDLRSKARTLPGPVTDPAKLPKWNYDGSST
Sbjct: 1  MSLLSDLINLNLTDSTDKIIAEYVWIGGSGLDLRSKARTLPGPVTDPAKLPKWNYDGSST 60

Query: 61 NQAPGDDSEVILYPQAIFKDPFRRGNNIL 90
          NQAPGDDSEVILYPQAIFKDPFRRGNNIL
Sbjct: 61 NQAPGDDSEVILYPQAIFKDPFRRGNNIL 89

[Close]
BLAST of Carg13412 vs. ExPASy TrEMBL
Match: A0A6J1H745 (Glutamine synthetase OS=Cucurbita moschata OX=3662 GN=LOC111461050 PE=3 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 3.5e-43
Identity = 88/89 (98.88%), Postives = 88/89 (98.88%), Query Frame = 0 

Query: 1  MSFLSDLINLNLTDSTDKIIAEYVWIGGSGLDLRSKARTLPGPVTDPAKLPKWNYDGSST 60
          MS LSDLINLNLTDSTDKIIAEYVWIGGSGLDLRSKARTLPGPVTDPAKLPKWNYDGSST
Sbjct: 1  MSLLSDLINLNLTDSTDKIIAEYVWIGGSGLDLRSKARTLPGPVTDPAKLPKWNYDGSST 60

Query: 61 NQAPGDDSEVILYPQAIFKDPFRRGNNIL 90
          NQAPGDDSEVILYPQAIFKDPFRRGNNIL
Sbjct: 61 NQAPGDDSEVILYPQAIFKDPFRRGNNIL 89

[Close]
BLAST of Carg13412 vs. ExPASy TrEMBL
Match: A0A6J1KQU5 (Glutamine synthetase OS=Cucurbita maxima OX=3661 GN=LOC111497840 PE=3 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 1.1e-41
Identity = 86/89 (96.63%), Postives = 87/89 (97.75%), Query Frame = 0 

Query: 1  MSFLSDLINLNLTDSTDKIIAEYVWIGGSGLDLRSKARTLPGPVTDPAKLPKWNYDGSST 60
          MS LSDLINLNLTDSTDKIIAEYVWIGGSGLDLRSKARTLPG VTDPAKLP+WNYDGSST
Sbjct: 1  MSLLSDLINLNLTDSTDKIIAEYVWIGGSGLDLRSKARTLPGLVTDPAKLPRWNYDGSST 60

Query: 61 NQAPGDDSEVILYPQAIFKDPFRRGNNIL 90
          NQAPGDDSEVILYPQAIFKDPFRRGNNIL
Sbjct: 61 NQAPGDDSEVILYPQAIFKDPFRRGNNIL 89

[Close]
BLAST of Carg13412 vs. ExPASy TrEMBL
Match: A0A6J1L001 (Glutamine synthetase OS=Cucurbita maxima OX=3661 GN=LOC111497840 PE=3 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 1.1e-41
Identity = 86/89 (96.63%), Postives = 87/89 (97.75%), Query Frame = 0 

Query: 1  MSFLSDLINLNLTDSTDKIIAEYVWIGGSGLDLRSKARTLPGPVTDPAKLPKWNYDGSST 60
          MS LSDLINLNLTDSTDKIIAEYVWIGGSGLDLRSKARTLPG VTDPAKLP+WNYDGSST
Sbjct: 1  MSLLSDLINLNLTDSTDKIIAEYVWIGGSGLDLRSKARTLPGLVTDPAKLPRWNYDGSST 60

Query: 61 NQAPGDDSEVILYPQAIFKDPFRRGNNIL 90
          NQAPGDDSEVILYPQAIFKDPFRRGNNIL
Sbjct: 61 NQAPGDDSEVILYPQAIFKDPFRRGNNIL 89

[Close]
BLAST of Carg13412 vs. ExPASy TrEMBL
Match: A0A1S3CFV7 (Glutamine synthetase OS=Cucumis melo OX=3656 GN=LOC103499973 PE=3 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 1.9e-41
Identity = 83/89 (93.26%), Postives = 88/89 (98.88%), Query Frame = 0 

Query: 1  MSFLSDLINLNLTDSTDKIIAEYVWIGGSGLDLRSKARTLPGPVTDPAKLPKWNYDGSST 60
          MS LSDLINLNLTD+T+KIIAEYVWIGGSGLDLRSKARTLPGPVTDPAKLPKWNYDGSST
Sbjct: 1  MSLLSDLINLNLTDTTEKIIAEYVWIGGSGLDLRSKARTLPGPVTDPAKLPKWNYDGSST 60

Query: 61 NQAPGDDSEVILYPQAIFKDPFRRGNNIL 90
          NQAPGD+SEVI+YPQA+FKDPFRRGNNIL
Sbjct: 61 NQAPGDNSEVIIYPQAVFKDPFRRGNNIL 89

[Close]
BLAST of Carg13412 vs. TAIR 10
Match: AT5G37600.1 (glutamine synthase clone R1 )

HSP 1 Score: 173.3 bits (438), Expect = 2.1e-43
Identity = 78/89 (87.64%), Postives = 87/89 (97.75%), Query Frame = 0 

Query: 1  MSFLSDLINLNLTDSTDKIIAEYVWIGGSGLDLRSKARTLPGPVTDPAKLPKWNYDGSST 60
          MS +SDLINLNL+DSTDKIIAEY+W+GGSG+D+RSKARTLPGPVTDP++LPKWNYDGSST
Sbjct: 1  MSLVSDLINLNLSDSTDKIIAEYIWVGGSGMDMRSKARTLPGPVTDPSQLPKWNYDGSST 60

Query: 61 NQAPGDDSEVILYPQAIFKDPFRRGNNIL 90
           QAPG+DSEVILYPQAIFKDPFRRGNNIL
Sbjct: 61 GQAPGEDSEVILYPQAIFKDPFRRGNNIL 89

[Close]
BLAST of Carg13412 vs. TAIR 10
Match: AT5G16570.1 (glutamine synthetase 1;4 )

HSP 1 Score: 171.0 bits (432), Expect = 1.0e-42
Identity = 78/89 (87.64%), Postives = 87/89 (97.75%), Query Frame = 0 

Query: 1  MSFLSDLINLNLTDSTDKIIAEYVWIGGSGLDLRSKARTLPGPVTDPAKLPKWNYDGSST 60
          MS L+DLINL+L+DSTD+IIAEY+WIGGSGLD+RSKARTLPGPVTDP++LPKWNYDGSST
Sbjct: 1  MSSLADLINLDLSDSTDQIIAEYIWIGGSGLDMRSKARTLPGPVTDPSQLPKWNYDGSST 60

Query: 61 NQAPGDDSEVILYPQAIFKDPFRRGNNIL 90
           QAPGDDSEVI+YPQAIFKDPFRRGNNIL
Sbjct: 61 GQAPGDDSEVIIYPQAIFKDPFRRGNNIL 89

[Close]
BLAST of Carg13412 vs. TAIR 10
Match: AT3G17820.1 (glutamine synthetase 1.3 )

HSP 1 Score: 169.5 bits (428), Expect = 3.0e-42
Identity = 77/89 (86.52%), Postives = 85/89 (95.51%), Query Frame = 0 

Query: 1  MSFLSDLINLNLTDSTDKIIAEYVWIGGSGLDLRSKARTLPGPVTDPAKLPKWNYDGSST 60
          MS LSDL+NLNLTD+T KIIAEY+WIGGSG+D+RSKARTLPGPVTDP+KLPKWNYDGSST
Sbjct: 1  MSLLSDLVNLNLTDATGKIIAEYIWIGGSGMDIRSKARTLPGPVTDPSKLPKWNYDGSST 60

Query: 61 NQAPGDDSEVILYPQAIFKDPFRRGNNIL 90
           QA G+DSEVILYPQAIFKDPFR+GNNIL
Sbjct: 61 GQAAGEDSEVILYPQAIFKDPFRKGNNIL 89

[Close]
BLAST of Carg13412 vs. TAIR 10
Match: AT1G66200.3 (glutamine synthase clone F11 )

HSP 1 Score: 168.7 bits (426), Expect = 5.1e-42
Identity = 75/104 (72.12%), Postives = 90/104 (86.54%), Query Frame = 0 

Query: 1   MSFLSDLINLNLTDSTDKIIAEYVWIGGSGLDLRSKARTLPGPVTDPAKLPKWNYDGSST 60
           MS L+DL+NL+++D+++KIIAEY+W+GGSG+D+RSKARTLPGPVTDP+KLPKWNYDGSST
Sbjct: 1   MSLLADLVNLDISDNSEKIIAEYIWVGGSGMDMRSKARTLPGPVTDPSKLPKWNYDGSST 60

Query: 61  NQAPGDDSEVILYPQAIFKDPFRRGNNILARLLLSIDVFLNTIY 105
            QAPG DSEVILYPQAIFKDPFRRGNNIL  +    D  +   Y
Sbjct: 61  GQAPGQDSEVILYPQAIFKDPFRRGNNILINVFYRFDQVMCDAY 104

[Close]
BLAST of Carg13412 vs. TAIR 10
Match: AT1G66200.1 (glutamine synthase clone F11 )

HSP 1 Score: 166.8 bits (421), Expect = 1.9e-41
Identity = 73/89 (82.02%), Postives = 86/89 (96.63%), Query Frame = 0 

Query: 1  MSFLSDLINLNLTDSTDKIIAEYVWIGGSGLDLRSKARTLPGPVTDPAKLPKWNYDGSST 60
          MS L+DL+NL+++D+++KIIAEY+W+GGSG+D+RSKARTLPGPVTDP+KLPKWNYDGSST
Sbjct: 1  MSLLADLVNLDISDNSEKIIAEYIWVGGSGMDMRSKARTLPGPVTDPSKLPKWNYDGSST 60

Query: 61 NQAPGDDSEVILYPQAIFKDPFRRGNNIL 90
           QAPG DSEVILYPQAIFKDPFRRGNNIL
Sbjct: 61 GQAPGQDSEVILYPQAIFKDPFRRGNNIL 89

The following BLAST results are available for this feature:
BLAST of Carg13412 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7025622.18.5e-124100.00hypothetical protein SDJN02_12119 [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG6593271.11.5e-43100.00hypothetical protein SDJN03_12747, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022960252.17.3e-4398.88glutamine synthetase nodule isozyme-like isoform X2 [Cucurbita moschata][more]
XP_022960251.17.3e-4398.88glutamine synthetase nodule isozyme-like isoform X1 [Cucurbita moschata] >XP_023... [more]
XP_023515062.17.3e-4398.88glutamine synthetase nodule isozyme-like isoform X2 [Cucurbita pepo subsp. pepo][more]
BLAST of Carg13412 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P047711.3e-4289.89Glutamine synthetase PR-2 OS=Phaseolus vulgaris OX=3885 PE=2 SV=1[more]
P124242.2e-4291.01Glutamine synthetase OS=Nicotiana plumbaginifolia OX=4092 PE=2 SV=1[more]
Q56WN12.9e-4287.64Glutamine synthetase cytosolic isozyme 1-1 OS=Arabidopsis thaliana OX=3702 GN=GL... [more]
P076943.8e-4288.76Glutamine synthetase root isozyme A OS=Pisum sativum OX=3888 GN=GS3A PE=2 SV=1[more]
P322893.8e-4288.76Glutamine synthetase nodule isozyme OS=Vigna aconitifolia OX=3918 PE=2 SV=1[more]
BLAST of Carg13412 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1H6X73.5e-4398.88Glutamine synthetase OS=Cucurbita moschata OX=3662 GN=LOC111461050 PE=3 SV=1[more]
A0A6J1H7453.5e-4398.88Glutamine synthetase OS=Cucurbita moschata OX=3662 GN=LOC111461050 PE=3 SV=1[more]
A0A6J1KQU51.1e-4196.63Glutamine synthetase OS=Cucurbita maxima OX=3661 GN=LOC111497840 PE=3 SV=1[more]
A0A6J1L0011.1e-4196.63Glutamine synthetase OS=Cucurbita maxima OX=3661 GN=LOC111497840 PE=3 SV=1[more]
A0A1S3CFV71.9e-4193.26Glutamine synthetase OS=Cucumis melo OX=3656 GN=LOC103499973 PE=3 SV=1[more]
BLAST of Carg13412 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G37600.12.1e-4387.64glutamine synthase clone R1 [more]
AT5G16570.11.0e-4287.64glutamine synthetase 1;4 [more]
AT3G17820.13.0e-4286.52glutamine synthetase 1.3 [more]
AT1G66200.35.1e-4272.12glutamine synthase clone F11 [more]
AT1G66200.11.9e-4182.02glutamine synthase clone F11 [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036651Glutamine synthetase, N-terminal domain superfamilyGENE3D3.10.20.70coord: 1..93
e-value: 1.2E-37
score: 130.0
IPR036651Glutamine synthetase, N-terminal domain superfamilySUPERFAMILY54368Glutamine synthetase, N-terminal domaincoord: 11..89
NoneNo IPR availablePANTHERPTHR20852GLUTAMINE SYNTHETASEcoord: 1..90
NoneNo IPR availablePANTHERPTHR20852:SF95GLUTAMINE SYNTHETASEcoord: 1..90
IPR027302Glutamine synthetase, N-terminal conserved sitePROSITEPS00180GLNA_1coord: 55..72

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg13412-RACarg13412-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006542 glutamine biosynthetic process
biological_process GO:0006807 nitrogen compound metabolic process
cellular_component GO:0005737 cytoplasm
molecular_function GO:0005524 ATP binding
molecular_function GO:0004356 glutamate-ammonia ligase activity