Carg13384 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGAAGCCAGTGGCTCTTCTTCTTCATCCTCCAGCCACCATCCCTTCAGCTGCTCTTCGTCTCTCCTCCAAATCCCACCTTCGAAATCGTCCCTTAAGCTTCTCCTGTTTCGCTGTTCAATCTGAATCGGTAAGGTTTCAATCTTCCCTCGCTGTTTTTGAATTCAATCGACTTTTTCTTATCTTCATTGTATTTCAAATTAATCCATAGACAAAGGTTGAAGTATCTTCAAAGCCCGAATACAAGCCTGGAATGCTCGACGATTTCTTCCTCAACCTCTTCCGAAGCAAAATGGTTCAGGTTGTTTAATTCAACACTTCACTTTCGTTGTTATCACCAATCGAGTTTCTGAGAAAGCAAGTAGTTGAAGTTAATTCTTTAATGTGTGTTTTGACTGCAGGAAGTCGGCTGGGATTCTGACAAACCTGGATATGATGGACTAATCGAAGTCGCTAACAGGCTCACGATGAAGGGCAAATCCAATTCCGATACCATAGAAGCGTCGGTATTTCTTTTTTAAGAACAATTTGTAGATACAGAACAGAACATCTAAGTTTTTTGTACTCTTTGAACATTTGATCGTAACTGAAATTGTTATCGCGAGTTGAGGTTCGTAAATTTCATTATGGAAATTTGGTTGTTGCTGCAGGTTCGAATTTTAATAGCTTTGTTTCCTCCTCTTCTATTGGAACTTTATCGGATGCTGGTATCACCTATAGCTGGTGGGAAAGTGGCTGCGATTATGGTCGGTGAGTTGAGCCCTTCAATCTTTATCTGTATCTAGAATTTGGATATTGTTCCTTTTTATTTGGGAATCAATTACTTTCCATTTGTTTGACTTTGATCCATCTGGTGTAAGATTTTGAAGATTAGTTGAACTGTTCTTCTCTTTTTTTCTTTTTCCTCTGTGTTGAAAGCAAGGGTGACTGCGTTCACTTGTCAATGGCTAATGGGAACTTGTACTGTAAATTCAATTGAATTACCTGATGGATCGTCTTGCCAAAGTGGGGTATGAATTATTGATTACCATGTTCATGAATTTCCGTGGGAGTTGCTGATATTTTGGATTTTTTAAACATCAATTCAATATTCAAAGCTTACTGATGCAGGTTTTCGTTGAAAAATGCAAGTACTTAGAAGAAAGTAAATGCATAGGAATTTGTCTCAACACTTGCAAGTTTCCTACTCAGGTTTGTTCTTGCCAACCTATATATATCAAGCTCTTTCTTTACATTATTGGTTATTTGGGAATGTCTTGTTCGTTCGAGTCTCTTGATTCTGCACACACTATTCATTTGAGGACTCGACTCGAGCAAATCTTGACAATCTTAATTGTGATGTAGAGCTTCTTCAAGAACCAGATGGGAATTCCTCTATTAATGGAGCCAAACTTCAATGACTATAGTTGTCAGGTAATTCTATCACTTAACATTTCTGTTCCACTGTTGGGCAACTTTGTGGGCAGAACGGATAAGTCCTATTACATGATATTGTTTGTATCGATCTCCTGGAATGTTTGGATCCAAAGTATTGTGACTTGATTGAAATGGAGTTACTGAATTTAGTGTGAATTCTCCTTTTAGCCTTGACGAACACTGCTATTGACATCTAGACTCTAGTTATATGAAGATATCATTAGCCAGATTCCCAATTGAATTGAATCAAATAAATCCATAGTTTGAAAATGGTTTTGGGACCAGTGTATGGGACGTGTCGTGTGTTAAAGATTGTTAAGAGGGAATCCCACGTTGGCTAATTTAAAGAATGATTATGAGTTTAGAAGTAAGGAATACATCTACATTAGCATGAGGCCTTTTGGAGAAGCCGAAAGCAAAGCCATGACAGCTTATGGTCAAAGTAGGACAATATCGTCCCATTGTTGTGCTCAAAGTGGATTGTTAGGGAGAGGCTGTTCGAGGGCTACATAGACCTCCGGGAGGATTGTTCTGAGGGAGTCCCACATTGACTAATTTAGGTAATGATCATAGGTTCATAAGTAAGGAATACATCTCCCCAAGTAAAATCTTAGACTCTAGCTCTATGAAGATGTCATTAGCCACTTATTGAATTGAACCAAATAAATCCACAGTTTGGAAATGCTTTTGGCTTTTGGGACTGGTGTATGGAATTTGTTGTGGCTGCCACTTTCTGTAATTTTGATCAAAGGGCGGTTTAACTTAGCGAGTGAAATAAGCATCCCAACTGCAACCACAATCATTTGATATTGTCCATTTTAAGCATAAGCTCTCGTGGCTTTGTTTTTGGTTTTGGTTTCTCCAAAAGGCTTCGTACCAAAGAAAATGTATTCCTTACTTATAAACCCACGATCACCCCTTAATTAGTCGATGTGAGACTCCTCTCCCAACAATCCTCGACACAACCCACCTGTTTAATGATACCCATATCAGCACCTTGTATCAATCTAATCAACGTTCACTTTCCTTTTTTTGTTTCTTGTGGGGCAACCGAATGTCAAAGTTCAAATTTGGTGTTCTCCCTCCTCTGCCTGAAGAAGACAGCATACTCAAAGAGCCTTGCTTGGAGATATGTCCTAATGCCACAAGAAGAAGAGAAGTTTTGAATAAGATGAGTGCAACGCAGTGCCCTAAAGCATAG ATGAAGCCAGTGGCTCTTCTTCTTCATCCTCCAGCCACCATCCCTTCAGCTGCTCTTCGTCTCTCCTCCAAATCCCACCTTCGAAATCGTCCCTTAAGCTTCTCCTGTTTCGCTGTTCAATCTGAATCGACAAAGGTTGAAGTATCTTCAAAGCCCGAATACAAGCCTGGAATGCTCGACGATTTCTTCCTCAACCTCTTCCGAAGCAAAATGGTTCAGGAAGTCGGCTGGGATTCTGACAAACCTGGATATGATGGACTAATCGAAGTCGCTAACAGGCTCACGATGAAGGGCAAATCCAATTCCGATACCATAGAAGCGTCGGTTCGAATTTTAATAGCTTTGTTTCCTCCTCTTCTATTGGAACTTTATCGGATGCTGGTATCACCTATAGCTGGTGGGAAAGTGGCTGCGATTATGGTCGCAAGGGTGACTGCGTTCACTTGTCAATGGCTAATGGGAACTTGTACTGTAAATTCAATTGAATTACCTGATGGATCGTCTTGCCAAAGTGGGGTTTTCGTTGAAAAATGCAAGTACTTAGAAGAAAGTAAATGCATAGGAATTTGTCTCAACACTTGCAAGTTTCCTACTCAGAGCTTCTTCAAGAACCAGATGGGAATTCCTCTATTAATGGAGCCAAACTTCAATGACTATAGTTGTCAGTTCAAATTTGGTGTTCTCCCTCCTCTGCCTGAAGAAGACAGCATACTCAAAGAGCCTTGCTTGGAGATATGTCCTAATGCCACAAGAAGAAGAGAAGTTTTGAATAAGATGAGTGCAACGCAGTGCCCTAAAGCATAG ATGAAGCCAGTGGCTCTTCTTCTTCATCCTCCAGCCACCATCCCTTCAGCTGCTCTTCGTCTCTCCTCCAAATCCCACCTTCGAAATCGTCCCTTAAGCTTCTCCTGTTTCGCTGTTCAATCTGAATCGACAAAGGTTGAAGTATCTTCAAAGCCCGAATACAAGCCTGGAATGCTCGACGATTTCTTCCTCAACCTCTTCCGAAGCAAAATGGTTCAGGAAGTCGGCTGGGATTCTGACAAACCTGGATATGATGGACTAATCGAAGTCGCTAACAGGCTCACGATGAAGGGCAAATCCAATTCCGATACCATAGAAGCGTCGGTTCGAATTTTAATAGCTTTGTTTCCTCCTCTTCTATTGGAACTTTATCGGATGCTGGTATCACCTATAGCTGGTGGGAAAGTGGCTGCGATTATGGTCGCAAGGGTGACTGCGTTCACTTGTCAATGGCTAATGGGAACTTGTACTGTAAATTCAATTGAATTACCTGATGGATCGTCTTGCCAAAGTGGGGTTTTCGTTGAAAAATGCAAGTACTTAGAAGAAAGTAAATGCATAGGAATTTGTCTCAACACTTGCAAGTTTCCTACTCAGAGCTTCTTCAAGAACCAGATGGGAATTCCTCTATTAATGGAGCCAAACTTCAATGACTATAGTTGTCAGTTCAAATTTGGTGTTCTCCCTCCTCTGCCTGAAGAAGACAGCATACTCAAAGAGCCTTGCTTGGAGATATGTCCTAATGCCACAAGAAGAAGAGAAGTTTTGAATAAGATGAGTGCAACGCAGTGCCCTAAAGCATAG MKPVALLLHPPATIPSAALRLSSKSHLRNRPLSFSCFAVQSESTKVEVSSKPEYKPGMLDDFFLNLFRSKMVQEVGWDSDKPGYDGLIEVANRLTMKGKSNSDTIEASVRILIALFPPLLLELYRMLVSPIAGGKVAAIMVARVTAFTCQWLMGTCTVNSIELPDGSSCQSGVFVEKCKYLEESKCIGICLNTCKFPTQSFFKNQMGIPLLMEPNFNDYSCQFKFGVLPPLPEEDSILKEPCLEICPNATRRREVLNKMSATQCPKA Homology
BLAST of Carg13384 vs. NCBI nr
Match: KAG7025594.1 (Beta-carotene isomerase D27, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 541.6 bits (1394), Expect = 3.9e-150 Identity = 267/267 (100.00%), Postives = 267/267 (100.00%), Query Frame = 0
BLAST of Carg13384 vs. NCBI nr
Match: KAG6593243.1 (Beta-carotene isomerase D27, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 538.5 bits (1386), Expect = 3.3e-149 Identity = 265/267 (99.25%), Postives = 266/267 (99.63%), Query Frame = 0
BLAST of Carg13384 vs. NCBI nr
Match: XP_022959652.1 (beta-carotene isomerase D27, chloroplastic [Cucurbita moschata]) HSP 1 Score: 528.1 bits (1359), Expect = 4.4e-146 Identity = 260/267 (97.38%), Postives = 262/267 (98.13%), Query Frame = 0
BLAST of Carg13384 vs. NCBI nr
Match: XP_023514967.1 (beta-carotene isomerase D27, chloroplastic [Cucurbita pepo subsp. pepo]) HSP 1 Score: 525.8 bits (1353), Expect = 2.2e-145 Identity = 259/267 (97.00%), Postives = 263/267 (98.50%), Query Frame = 0
BLAST of Carg13384 vs. NCBI nr
Match: XP_023004624.1 (beta-carotene isomerase D27, chloroplastic [Cucurbita maxima]) HSP 1 Score: 523.9 bits (1348), Expect = 8.3e-145 Identity = 258/267 (96.63%), Postives = 262/267 (98.13%), Query Frame = 0
BLAST of Carg13384 vs. ExPASy Swiss-Prot
Match: Q7XA78 (Beta-carotene isomerase D27, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=D27 PE=1 SV=1) HSP 1 Score: 127.5 bits (319), Expect = 2.3e-28 Identity = 77/236 (32.63%), Postives = 124/236 (52.54%), Query Frame = 0
BLAST of Carg13384 vs. ExPASy Swiss-Prot
Match: R4HZ96 (Beta-carotene isomerase D27, chloroplastic OS=Medicago truncatula OX=3880 GN=D27 PE=1 SV=1) HSP 1 Score: 121.7 bits (304), Expect = 1.3e-26 Identity = 72/214 (33.64%), Postives = 109/214 (50.93%), Query Frame = 0
BLAST of Carg13384 vs. ExPASy Swiss-Prot
Match: C7AU21 (Beta-carotene isomerase D27, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=D27 PE=1 SV=1) HSP 1 Score: 108.6 bits (270), Expect = 1.1e-22 Identity = 61/211 (28.91%), Postives = 105/211 (49.76%), Query Frame = 0
BLAST of Carg13384 vs. ExPASy TrEMBL
Match: A0A6J1H551 (beta-carotene isomerase D27, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111460668 PE=4 SV=1) HSP 1 Score: 528.1 bits (1359), Expect = 2.1e-146 Identity = 260/267 (97.38%), Postives = 262/267 (98.13%), Query Frame = 0
BLAST of Carg13384 vs. ExPASy TrEMBL
Match: A0A6J1KWU1 (beta-carotene isomerase D27, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111497865 PE=4 SV=1) HSP 1 Score: 523.9 bits (1348), Expect = 4.0e-145 Identity = 258/267 (96.63%), Postives = 262/267 (98.13%), Query Frame = 0
BLAST of Carg13384 vs. ExPASy TrEMBL
Match: A0A0A0K9J2 (DUF4033 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G407750 PE=4 SV=1) HSP 1 Score: 465.7 bits (1197), Expect = 1.3e-127 Identity = 229/267 (85.77%), Postives = 242/267 (90.64%), Query Frame = 0
BLAST of Carg13384 vs. ExPASy TrEMBL
Match: A0A5D3D2R7 (Beta-carotene isomerase D27 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G001770 PE=4 SV=1) HSP 1 Score: 463.8 bits (1192), Expect = 5.0e-127 Identity = 232/268 (86.57%), Postives = 245/268 (91.42%), Query Frame = 0
BLAST of Carg13384 vs. ExPASy TrEMBL
Match: A0A1S3BRJ4 (beta-carotene isomerase D27, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103492751 PE=4 SV=1) HSP 1 Score: 463.8 bits (1192), Expect = 5.0e-127 Identity = 232/268 (86.57%), Postives = 245/268 (91.42%), Query Frame = 0
BLAST of Carg13384 vs. TAIR 10
Match: AT4G01995.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G64680.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 293.9 bits (751), Expect = 1.3e-79 Identity = 151/267 (56.55%), Postives = 192/267 (71.91%), Query Frame = 0
BLAST of Carg13384 vs. TAIR 10
Match: AT1G64680.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G03055.1); Has 146 Blast hits to 146 proteins in 26 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 125; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink). ) HSP 1 Score: 143.3 bits (360), Expect = 2.9e-34 Identity = 89/257 (34.63%), Postives = 133/257 (51.75%), Query Frame = 0
BLAST of Carg13384 vs. TAIR 10
Match: AT1G03055.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G64680.1); Has 143 Blast hits to 143 proteins in 26 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 122; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink). ) HSP 1 Score: 127.5 bits (319), Expect = 1.6e-29 Identity = 77/236 (32.63%), Postives = 124/236 (52.54%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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