Carg13342 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg13342
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr07: 6569543 .. 6570483 (-)
RNA-Seq ExpressionCarg13342
SyntenyCarg13342
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTCAAACGGAGGGTTTTTGGAGATTTGCAGCACGTAAAAACCTCCGCGAATTAGGTAAGATTTTGAGATTTGTTTCATCTTATGGGGCTCTAGATTCTCGTTTCTTCTTTTCCTTTGATCTTTGAATTGTTCCGCATTTTTGGCTTTGATCTGACCGAATTTCCATGTTTTCTCTGTTTCAAAAGTAGGGTTTTCACTCTCTTCTGGTTTCATTCTGATTTTGCGTTTCTTGGATCACCTTTTTCTTTTGTTTTTGTGTTTCTTTTTGCTTGTTTGTTAGGAAGAAGAGCATTGATTGGAATAAAAGAAAGTGGAGCTGTTTCTTGATTTCTCTTTTTTGCGTTTTTATTTTTCTTTCTCTTGTTAGTGTCAAGTAGCTAAAAGCTTGCTTGTTCCTTTTGGTTTGTTGTTGAAGGAAAAATACGAGGAAATCCCAGCTGTAAAGGGGTTTCAAAATGATTCTGACCGTTTGGAGCTGAAGAATAATTACAAAAGTTTTGTGGGCTAAGAGCTTGGCTATGCTACAGAAGAATTTATCTAAAGGTTTTGGCCTTGTTTTTCAAGTTAAAACCTGCCGAAAACAGTTTGGAACTTCTCCTTAGCTGATTGATCAGAGTCAAGTCTAACCCAAAAATACTGATTTTCACTTGAATGTTGCGGGAACCTTTTTCTCCTCTTGTATTCGATATAGATTGATTTGAGATCGTTTATTCAAACTCAGCTTCTTCTATATTAATTCTCTCGCATTGGTAAGTAAATAAGCTATACAATTGCTGAGTAATACAACCTTCTTTCAAAAATGTAATTTTCATTACTCTAGTGGGACTGAGCTTGCCTATCTTCTATTTGCTGCATAGTAATTGTTTATTGGGGTTTTTCAGATTTCAAGCTATTTAATTATGCTCATCGACTACAGGGAGGATATTTTGGGAGAATGA

mRNA sequence

ATGTTCAAACGGAGGGTTTTTGGAGATTTGCAGCACTGTCAAGTAGCTAAAAGCTTGCTTGTTCCTTTTGGTTTGTTGTTGAAGGAAAAATACGAGGAAATCCCAGCTGTAAAGGGGTTTCAAAATGATTCTGACCGTTTGGAGCTGAAGAATAATTACAAAAGTTTTATTTCAAGCTATTTAATTATGCTCATCGACTACAGGGAGGATATTTTGGGAGAATGA

Coding sequence (CDS)

ATGTTCAAACGGAGGGTTTTTGGAGATTTGCAGCACTGTCAAGTAGCTAAAAGCTTGCTTGTTCCTTTTGGTTTGTTGTTGAAGGAAAAATACGAGGAAATCCCAGCTGTAAAGGGGTTTCAAAATGATTCTGACCGTTTGGAGCTGAAGAATAATTACAAAAGTTTTATTTCAAGCTATTTAATTATGCTCATCGACTACAGGGAGGATATTTTGGGAGAATGA

Protein sequence

MFKRRVFGDLQHCQVAKSLLVPFGLLLKEKYEEIPAVKGFQNDSDRLELKNNYKSFISSYLIMLIDYREDILGE
Homology
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BLAST of Carg13342 vs. NCBI nr
Match: KAG7027461.1 (hypothetical protein SDJN02_11474, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 152.1 bits (383), Expect = 1.8e-33
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0 

Query: 1  MFKRRVFGDLQHCQVAKSLLVPFGLLLKEKYEEIPAVKGFQNDSDRLELKNNYKSFISSY 60
          MFKRRVFGDLQHCQVAKSLLVPFGLLLKEKYEEIPAVKGFQNDSDRLELKNNYKSFISSY
Sbjct: 1  MFKRRVFGDLQHCQVAKSLLVPFGLLLKEKYEEIPAVKGFQNDSDRLELKNNYKSFISSY 60

Query: 61 LIMLIDYREDILGE 75
          LIMLIDYREDILGE
Sbjct: 61 LIMLIDYREDILGE 74

The following BLAST results are available for this feature:
BLAST of Carg13342 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7027461.11.8e-33100.00hypothetical protein SDJN02_11474, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg13342 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg13342 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg13342 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg13342-RACarg13342-RAmRNA