Carg13311 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg13311
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	40S ribosomal protein S28
Location	Carg_Chr07: 6306649 .. 6307874 (-)
RNA-Seq Expression	Carg13311
Synteny	Carg13311

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCTCCATTCCAACCCACCGACCCAACCCACATGGCCCGGCCCAATCCACTTTATAAGAAACGTAAACCCTAGCTTCATATCTTTCTCTCGTTGCCGCACAAGCTTCTTCGATCGTCTTCCATCTCTTGCTCTCAGGTGTTTCTCTCTAAACTGTTGTATCTTGACATTTATCTTCCAGATAGTTGATTAAGTGCTCAGCTGTTTCTCAGTTTTGTTGCCGTTCAATCGTTGATTTCTTTTGTTTCTGTTGTTGAATTTATACGAGGCTGATAATTTTCGATTAGTAATTAAACAGGAAACTTAAGAATTGTTGCTATAGGTCTTCGTATTAAGGAGATGGCTACTGTGTTAACAGAGATTTCGCCTTCTTTGAGTTGAAGAACTAGCCTTCCTCGGATGTTTTACTGTATGGTTTAATTAAAAAATTTGTTAAGTTATTGGAATTATAATTATCGCCATGTGTTTTCTGGTAGATGATGATGTATTGTTTTAGCATGACGTCTAAAAGCACTTCTTCGTGTTTAAAATCACCTTTGATTGTTCTTAGTTATTCAGAATTAAATTTTACAGTATGATAATTACATTTCAAAATCACTGACGAACAGATCAGCCTTTATTGTGTTTGGAAGTGATTTGTAATGCTTTACGGAAAAGTCTGATTTCTTTGTGAGGAATAAGTTGCTGCAAAAAAGTTTTGGCTGCTAGATTTTAACACTCACAATCACAATGCGTTCACCTAGTAGCCATGAGGCCATTGAAAAAATAGATTTGCTTAGATGTATTGGGTTTAAATTATGTGTTGGCCATCTATGTATTTTGACTTTCCTTGGCAATAATTAGCAATCGAATGAAGTAGGGTTAGCAAGTGATAATCTGATCAAAAGTGCTTCTAATATCATTTGATTTAAATGTACTTCAAAACCCAAGTCCTTAGAGAAGTGCCATTATACGGAAAAAGGTTCACTCTGATTGTAGCTATAAGATTTGTTTGTTTGGTTTTTTAATAGGTGTGTTTGGGTAGGAATGGAGTCACAGATCAAGCATGCTGTGGTAGTGAAAGTAATGGGTAGAACTGGATCCAGAGGGCAGGTGACTCAAGTGAGAGTCAAATTTCTTGATGATCAGAATCGTTACATTATGAGGAATGTGAAGGGACCTGTCAGGGAAGGCGATATTCTTACCCTACTCGAGTCTGAGAGGGAAGCTAGACGGTTGCGTTGA

mRNA sequence

ATGGATCTCCATTCCAACCCACCGACCCAACCCACATGGCCCGGCCCAATCCACTTTATAAGAAACGTAAACCCTAGCTTCATATCTTTCTCTCGTTGCCGCACAAGCTTCTTCGATCGTCTTCCATCTCTTGCTCTCAGGTGTGTTTGGGTAGGAATGGAGTCACAGATCAAGCATGCTGTGGTAGTGAAAGTAATGGGTAGAACTGGATCCAGAGGGCAGGTGACTCAAGTGAGAGTCAAATTTCTTGATGATCAGAATCGTTACATTATGAGGAATGTGAAGGGACCTGTCAGGGAAGGCGATATTCTTACCCTACTCGAGTCTGAGAGGGAAGCTAGACGGTTGCGTTGA

Coding sequence (CDS)

ATGGATCTCCATTCCAACCCACCGACCCAACCCACATGGCCCGGCCCAATCCACTTTATAAGAAACGTAAACCCTAGCTTCATATCTTTCTCTCGTTGCCGCACAAGCTTCTTCGATCGTCTTCCATCTCTTGCTCTCAGGTGTGTTTGGGTAGGAATGGAGTCACAGATCAAGCATGCTGTGGTAGTGAAAGTAATGGGTAGAACTGGATCCAGAGGGCAGGTGACTCAAGTGAGAGTCAAATTTCTTGATGATCAGAATCGTTACATTATGAGGAATGTGAAGGGACCTGTCAGGGAAGGCGATATTCTTACCCTACTCGAGTCTGAGAGGGAAGCTAGACGGTTGCGTTGA

Protein sequence

MDLHSNPPTQPTWPGPIHFIRNVNPSFISFSRCRTSFFDRLPSLALRCVWVGMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR

Homology

[Close]

BLAST of Carg13311 vs. NCBI nr
Match: KAG7027430.1 (40S ribosomal protein S28, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 241.5 bits (615), Expect = 3.6e-60
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 1   MDLHSNPPTQPTWPGPIHFIRNVNPSFISFSRCRTSFFDRLPSLALRCVWVGMESQIKHA 60
           MDLHSNPPTQPTWPGPIHFIRNVNPSFISFSRCRTSFFDRLPSLALRCVWVGMESQIKHA
Sbjct: 1   MDLHSNPPTQPTWPGPIHFIRNVNPSFISFSRCRTSFFDRLPSLALRCVWVGMESQIKHA 60

Query: 61  VVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR 118
           VVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
Sbjct: 61  VVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR 117

[Close]

BLAST of Carg13311 vs. NCBI nr
Match: KAG6595421.1 (40S ribosomal protein S28, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 188.0 bits (476), Expect = 4.8e-44
Identity = 95/117 (81.20%), Postives = 100/117 (85.47%), Query Frame = 0


Query: 1   MDLHSNPPTQPTWPGPIHFIRNVNPSFISFSRCRTSFFDRLPSLALRCVWVGMESQIKHA 60
           MDLHSNPPTQPTWPGPIHFIRNVNPSF+S    + S      S+    +  GMESQIKHA
Sbjct: 1   MDLHSNPPTQPTWPGPIHFIRNVNPSFLSLVAAQAS-----SSIVFHLLLSGMESQIKHA 60

Query: 61  VVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR 118
           +VVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
Sbjct: 61  MVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR 112

[Close]

BLAST of Carg13311 vs. NCBI nr
Match: XP_022922061.1 (40S ribosomal protein S28-1-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 129.8 bits (325), Expect = 1.5e-26
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 52  GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESER 111
           GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESER
Sbjct: 44  GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESER 103

Query: 112 EARRLR 118
           EARRLR
Sbjct: 104 EARRLR 109

[Close]

BLAST of Carg13311 vs. NCBI nr
Match: KAG7023246.1 (40S ribosomal protein S28, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 129.8 bits (325), Expect = 1.5e-26
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 52  GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESER 111
           GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESER
Sbjct: 34  GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESER 93

Query: 112 EARRLR 118
           EARRLR
Sbjct: 94  EARRLR 99

[Close]

BLAST of Carg13311 vs. NCBI nr
Match: XP_022922062.1 (40S ribosomal protein S28-1-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 129.8 bits (325), Expect = 1.5e-26
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 52  GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESER 111
           GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESER
Sbjct: 41  GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESER 100

Query: 112 EARRLR 118
           EARRLR
Sbjct: 101 EARRLR 106

[Close]

BLAST of Carg13311 vs. ExPASy Swiss-Prot
Match: P46302 (40S ribosomal protein S28 OS=Zea mays OX=4577 GN=RPS28 PE=3 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 8.8e-25
Identity = 59/65 (90.77%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 53  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 112
           M++Q+K AVVVKVMGRTGSRGQVTQVRVKFLDDQNR IMRNVKGPV EGDILTLLESERE
Sbjct: 1   MDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVCEGDILTLLESERE 60

Query: 113 ARRLR 118
           ARRLR
Sbjct: 61  ARRLR 65

[Close]

BLAST of Carg13311 vs. ExPASy Swiss-Prot
Match: Q9SR73 (40S ribosomal protein S28-1 OS=Arabidopsis thaliana OX=3702 GN=RPS28A PE=3 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.5e-24
Identity = 60/65 (92.31%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 53  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 112
           M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +RYIMRNVKGPVREGDILTLLESERE
Sbjct: 1   MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRYIMRNVKGPVREGDILTLLESERE 60

Query: 113 ARRLR 118
           ARRLR
Sbjct: 61  ARRLR 64

[Close]

BLAST of Carg13311 vs. ExPASy Swiss-Prot
Match: P34789 (40S ribosomal protein S28-2 OS=Arabidopsis thaliana OX=3702 GN=RPS28C PE=3 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 5.7e-24
Identity = 58/65 (89.23%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 53  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 112
           M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +R+IMRNVKGPVREGD+LTLLESERE
Sbjct: 1   MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRFIMRNVKGPVREGDVLTLLESERE 60

Query: 113 ARRLR 118
           ARRLR
Sbjct: 61  ARRLR 64

[Close]

BLAST of Carg13311 vs. ExPASy Swiss-Prot
Match: Q6PBK3 (40S ribosomal protein S28 OS=Danio rerio OX=7955 GN=rps28 PE=3 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.4e-19
Identity = 49/61 (80.33%), Postives = 55/61 (90.16%), Query Frame = 0


Query: 57  IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRL 116
           IK A V KV+GRTGS+GQ TQVRV+F+DD NR I+RNVKGPVREGD+LTLLESEREARRL
Sbjct: 9   IKLARVTKVLGRTGSQGQCTQVRVEFMDDSNRSIIRNVKGPVREGDVLTLLESEREARRL 68

Query: 117 R 118
           R
Sbjct: 69  R 69

[Close]

BLAST of Carg13311 vs. ExPASy Swiss-Prot
Match: Q90YP3 (40S ribosomal protein S28 OS=Ictalurus punctatus OX=7998 GN=rps28 PE=3 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.4e-19
Identity = 49/61 (80.33%), Postives = 55/61 (90.16%), Query Frame = 0


Query: 57  IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRL 116
           IK A V KV+GRTGS+GQ TQVRV+F+DD NR I+RNVKGPVREGD+LTLLESEREARRL
Sbjct: 9   IKLARVTKVLGRTGSQGQCTQVRVEFMDDSNRSIIRNVKGPVREGDVLTLLESEREARRL 68

Query: 117 R 118
           R
Sbjct: 69  R 69

[Close]

BLAST of Carg13311 vs. ExPASy TrEMBL
Match: A0A6J1E226 (40S ribosomal protein S28-1-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111430126 PE=3 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 7.4e-27
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 52  GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESER 111
           GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESER
Sbjct: 41  GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESER 100

Query: 112 EARRLR 118
           EARRLR
Sbjct: 101 EARRLR 106

[Close]

BLAST of Carg13311 vs. ExPASy TrEMBL
Match: A0A6J1E336 (40S ribosomal protein S28-1-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111430126 PE=3 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 7.4e-27
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 52  GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESER 111
           GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESER
Sbjct: 44  GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESER 103

Query: 112 EARRLR 118
           EARRLR
Sbjct: 104 EARRLR 109

[Close]

BLAST of Carg13311 vs. ExPASy TrEMBL
Match: A0A6J1C0B5 (40S ribosomal protein S28-1-like OS=Momordica charantia OX=3673 GN=LOC111006903 PE=3 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 1.7e-26
Identity = 72/92 (78.26%), Postives = 73/92 (79.35%), Query Frame = 0


Query: 26  SFISFSRCRTSFFDRLPSLALRCVWVGMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDD 85
           S +S  R R S F   P          MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDD
Sbjct: 29  SCLSARRRRLSSFAVRPPPVSLVFASRMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDD 88

Query: 86  QNRYIMRNVKGPVREGDILTLLESEREARRLR 118
           QNRYIMRNVKGPVREGDILTLLESEREARRLR
Sbjct: 89  QNRYIMRNVKGPVREGDILTLLESEREARRLR 120

[Close]

BLAST of Carg13311 vs. ExPASy TrEMBL
Match: A0A2P5EA46 (Ribosomal protein OS=Trema orientale OX=63057 GN=TorRG33x02_217770 PE=3 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 2.8e-26
Identity = 73/113 (64.60%), Postives = 82/113 (72.57%), Query Frame = 0


Query: 5   SNPPTQPTWPGPIHFIRNVNPSFISFSRCRTSFFDRLPSLALRCVWVGMESQIKHAVVVK 64
           S     P+    I+ ++  +PS I   R     F+ L  L L      M+SQ+KHAVVVK
Sbjct: 35  SRSQPNPSLVRTINTLKPASPSSIFSPREPRRRFEALGDLKLS---TRMDSQVKHAVVVK 94

Query: 65  VMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR 118
           VMGRTGSRGQVTQVRVKFLDDQNR+IMRNVKGPVREGDILTLLESEREARRLR
Sbjct: 95  VMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTLLESEREARRLR 144

[Close]

BLAST of Carg13311 vs. ExPASy TrEMBL
Match: A0A6J1HTG7 (40S ribosomal protein S28-1 OS=Cucurbita maxima OX=3661 GN=LOC111467300 PE=3 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 3.7e-26
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 53  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 112
           MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE
Sbjct: 1   MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60

Query: 113 ARRLR 118
           ARRLR
Sbjct: 61  ARRLR 65

[Close]

BLAST of Carg13311 vs. TAIR 10
Match: AT3G10090.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 113.6 bits (283), Expect = 1.1e-25
Identity = 60/65 (92.31%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 53  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 112
           M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +RYIMRNVKGPVREGDILTLLESERE
Sbjct: 1   MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRYIMRNVKGPVREGDILTLLESERE 60

Query: 113 ARRLR 118
           ARRLR
Sbjct: 61  ARRLR 64

[Close]

BLAST of Carg13311 vs. TAIR 10
Match: AT5G03850.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 113.6 bits (283), Expect = 1.1e-25
Identity = 60/65 (92.31%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 53  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 112
           M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +RYIMRNVKGPVREGDILTLLESERE
Sbjct: 1   MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRYIMRNVKGPVREGDILTLLESERE 60

Query: 113 ARRLR 118
           ARRLR
Sbjct: 61  ARRLR 64

[Close]

BLAST of Carg13311 vs. TAIR 10
Match: AT5G64140.1 (ribosomal protein S28 )

HSP 1 Score: 111.7 bits (278), Expect = 4.0e-25
Identity = 58/65 (89.23%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 53  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 112
           M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +R+IMRNVKGPVREGD+LTLLESERE
Sbjct: 1   MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRFIMRNVKGPVREGDVLTLLESERE 60

Query: 113 ARRLR 118
           ARRLR
Sbjct: 61  ARRLR 64

The following BLAST results are available for this feature:

BLAST of Carg13311 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7027430.1	3.6e-60	100.00	40S ribosomal protein S28, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6595421.1	4.8e-44	81.20	40S ribosomal protein S28, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022922061.1	1.5e-26	100.00	40S ribosomal protein S28-1-like isoform X1 [Cucurbita moschata]	[more]
KAG7023246.1	1.5e-26	100.00	40S ribosomal protein S28, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022922062.1	1.5e-26	100.00	40S ribosomal protein S28-1-like isoform X2 [Cucurbita moschata]	[more]

BLAST of Carg13311 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P46302	8.8e-25	90.77	40S ribosomal protein S28 OS=Zea mays OX=4577 GN=RPS28 PE=3 SV=1	[more]
Q9SR73	1.5e-24	92.31	40S ribosomal protein S28-1 OS=Arabidopsis thaliana OX=3702 GN=RPS28A PE=3 SV=1	[more]
P34789	5.7e-24	89.23	40S ribosomal protein S28-2 OS=Arabidopsis thaliana OX=3702 GN=RPS28C PE=3 SV=1	[more]
Q6PBK3	1.4e-19	80.33	40S ribosomal protein S28 OS=Danio rerio OX=7955 GN=rps28 PE=3 SV=1	[more]
Q90YP3	1.4e-19	80.33	40S ribosomal protein S28 OS=Ictalurus punctatus OX=7998 GN=rps28 PE=3 SV=1	[more]

BLAST of Carg13311 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E226	7.4e-27	100.00	40S ribosomal protein S28-1-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A6J1E336	7.4e-27	100.00	40S ribosomal protein S28-1-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A6J1C0B5	1.7e-26	78.26	40S ribosomal protein S28-1-like OS=Momordica charantia OX=3673 GN=LOC111006903 ...	[more]
A0A2P5EA46	2.8e-26	64.60	Ribosomal protein OS=Trema orientale OX=63057 GN=TorRG33x02_217770 PE=3 SV=1	[more]
A0A6J1HTG7	3.7e-26	100.00	40S ribosomal protein S28-1 OS=Cucurbita maxima OX=3661 GN=LOC111467300 PE=3 SV=...	[more]

BLAST of Carg13311 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G10090.1	1.1e-25	92.31	Nucleic acid-binding, OB-fold-like protein	[more]
AT5G03850.1	1.1e-25	92.31	Nucleic acid-binding, OB-fold-like protein	[more]
AT5G64140.1	4.0e-25	89.23	ribosomal protein S28	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.40.50.140		coord: 52..117 e-value: 5.0E-36 score: 124.3
None	No IPR available	PANTHER	PTHR10769:SF3	40S RIBOSOMAL PROTEIN S28	coord: 53..117
IPR000289	Ribosomal protein S28e	PFAM	PF01200	Ribosomal_S28e	coord: 56..116 e-value: 7.2E-32 score: 109.2
IPR000289	Ribosomal protein S28e	PANTHER	PTHR10769	40S RIBOSOMAL PROTEIN S28	coord: 53..117
IPR000289	Ribosomal protein S28e	HAMAP	MF_00292	Ribosomal_S28e	coord: 53..117 score: 21.430906
IPR000289	Ribosomal protein S28e	CDD	cd04457	S1_S28E	coord: 58..117 e-value: 9.42677E-36 score: 115.04
IPR028626	Ribosomal protein S28e conserved site	PROSITE	PS00961	RIBOSOMAL_S28E	coord: 108..116
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 53..117

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg13311-RA	Carg13311-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030490	maturation of SSU-rRNA
biological_process	GO:0006508	proteolysis
biological_process	GO:0000028	ribosomal small subunit assembly
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0016779	nucleotidyltransferase activity
molecular_function	GO:0003735	structural constituent of ribosome