Carg13306 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg13306
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionAdenylate kinase
LocationCarg_Chr07: 6262832 .. 6264816 (+)
RNA-Seq ExpressionCarg13306
SyntenyCarg13306
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TTCAGCAGCTCAGTGTCGCCGCCGCCGCCTTTCTCCGGTTCAATACTTCCAACCATATTTTATCCAGCAGTGCCGTCACAGCTCCCTCTAGTGGTATGCAGTGATTTTCTACTCTCTCGTTGTTACGGTATTTTCCCAAATCTCCATCTTTGTCTTTCTTCTCACTTGAAAAAAAAAAATGCAAATTAGAACTTGTGCAATGAAATAATGAAAGGACGAAGGAGTTGTTTTAATTTTCTTAGTTAATAGCAACTAAAGAAAAAGAAAGAAAAAGAAAGAAAAAAAAAATCTTGCGGCAAATTGGGACTTCTCCGATTGCCGTTTACTACGTCGGCGATTTAAATTATTGCATATGTGCTTGAATTGAGGCTTGGTGTTCTGTATATATCTTTATTCTCTGCAGACATTGCATTGTTTCTATTCTTCAAAAATTTTTAAAGCACCGCCCACCATGAATTTTCCAGAATCTCCCTTCTTCTTTATTTATCTAGAACCAGTTGAAGTAAAGTAATCTATTGTATTCCAATTTTTCCTAAAAAACAAAAGGTCAGATATTAGGATCAAAATAGTTTAGCCAAATTTCTTTTGAAAACTTAGACCTCCATAGCTGGTTGTTCTGGGTCCTTCTTGCAAAGCGCACACCACAGCTCAACGGCTACCCTTTTTTCCAGTTCTTATTAACAGTAGAGGATTCTTTATCTAATTCTTTTTTAAGCCCTAGCTTGTAGGAGTTGGTCTGACTGACAAAACAACCTTAACTATGATGATATTTGTAGATTATAATTGGGAAGATGCGGTATGCAGTGCCGTCACAGCTCCCTTTAGTGTTTAGTTTAAACTGTACTTAGGATTCAGTTTTAAATTGTTCGATGAAATGTCTCTTAGAATGTCACTTTTGGAATTGGCATTAACAAGAGTGACGAAATGCCCCTTAGAAACCACTTTTGCATTGCATCATTATTTTTGTGAGGTGAATTGGCTTTGACAAGATAGTATATGTCTGAAAGCTTTCTAATCTATACCAGCCATTTGCAATGTTCAAATCTGAGATATCATCACTATAAATAACACGTCTGAGATCAGGGGAATAATTCAAATGAGTAATTATTCCTACATTGTAGGTATTTAGTAATTCATTTTTAATATAGAATGTAGGTAATAGATTTTTGTGTTTAAAATTTATACTTTTTGGGTGAAAAACCATGCTGTGGCTTTATCTTCCATTATACTGATTAGAACTATCTTAGTCAGCAATTATAAGATGAATAACTTTCAGGCTCGTATACATGAATTAAGTTATTCTTCTTCTGTTCAAAATTATTCATGGCGTGTTTTGTCTTCTCTTCTCAGAATTTCTGGACTCATTTTAAAAATTATTCATGATATGTTTTGTCTTCTCTTTTCAGAATGACTGGATTCATTTCTAGGACTCAGATTCAGAACTTGTTAGAGTTTTAAAAAAAAATTGATTGAAAACTATGCCGCACCGAACACGACCTATGACTGCGCTCCTTGTGTTTACTGGCCTCAATGTGGTGCTGGTATCAACCATCACACCAGTCTATGATTTTGTATGCTTTCATCCATATTGGGAAAGAAGGGTACTTTCAATTATCACTTACTCAAGTTATTTGCATGATATCTACATAGCATCTTTGTTAGGGTTCATCATGCCGTCTTTTTATGTACATGGATACTAGCTTATTATACTTGTGGTAAATATGTATTGTTCTCTGTGTTTGGTGTCAATTCACATTGTCATTGTTTCTCTGGCTGGCTTTAGTGTTGTGATTGAATGTCTGAACCAGGATATTTGTAAGGTTTCACTGGAGAAGGTAAAGTTGCAGTTGGCTGAGGGATTGTTAGCTTCTAGTTGTGAGAACTATAGAGTCTGGACTATGTACTGGGAGAAGATAGAGTGGGGAATAATTTTGAGGAAACTCGAAGAGCAATTATGCTCACAGAGTGCTGATGTTCTTGAGTGA

mRNA sequence

TTCAGCAGCTCAGTGTCGCCGCCGCCGCCTTTCTCCGGTTCAATACTTCCAACCATATTTTATCCAGCAGTGCCGTCACAGCTCCCTCTAGTGGTATGCAGTGATTTTCTACTCTCTCGTTGTTACGAATGACTGGATTCATTTCTAGGACTCAGATTCAGAACTTGTTAGAGTTTTAAAAAAAAATTGATTGAAAACTATGCCGCACCGAACACGACCTATGACTGCGCTCCTTGTGTTTACTGGCCTCAATGTGGTGCTGGTATCAACCATCACACCAGTCTATGATTTTGTATGCTTTCATCCATATTGGGAAAGAAGGGATATTTGTAAGGTTTCACTGGAGAAGGTAAAGTTGCAGTTGGCTGAGGGATTGTTAGCTTCTAGTTGTGAGAACTATAGAGTCTGGACTATGTACTGGGAGAAGATAGAGTGGGGAATAATTTTGAGGAAACTCGAAGAGCAATTATGCTCACAGAGTGCTGATGTTCTTGAGTGA

Coding sequence (CDS)

ATGCCGCACCGAACACGACCTATGACTGCGCTCCTTGTGTTTACTGGCCTCAATGTGGTGCTGGTATCAACCATCACACCAGTCTATGATTTTGTATGCTTTCATCCATATTGGGAAAGAAGGGATATTTGTAAGGTTTCACTGGAGAAGGTAAAGTTGCAGTTGGCTGAGGGATTGTTAGCTTCTAGTTGTGAGAACTATAGAGTCTGGACTATGTACTGGGAGAAGATAGAGTGGGGAATAATTTTGAGGAAACTCGAAGAGCAATTATGCTCACAGAGTGCTGATGTTCTTGAGTGA

Protein sequence

MPHRTRPMTALLVFTGLNVVLVSTITPVYDFVCFHPYWERRDICKVSLEKVKLQLAEGLLASSCENYRVWTMYWEKIEWGIILRKLEEQLCSQSADVLE
Homology
[Close]
BLAST of Carg13306 vs. NCBI nr
Match: KAG7027425.1 (hypothetical protein SDJN02_11438 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 209.5 bits (532), Expect = 1.3e-50
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0 

Query: 1   MPHRTRPMTALLVFTGLNVVLVSTITPVYDFVCFHPYWERRDICKVSLEKVKLQLAEGLL 60
           MPHRTRPMTALLVFTGLNVVLVSTITPVYDFVCFHPYWERRDICKVSLEKVKLQLAEGLL
Sbjct: 1   MPHRTRPMTALLVFTGLNVVLVSTITPVYDFVCFHPYWERRDICKVSLEKVKLQLAEGLL 60

Query: 61  ASSCENYRVWTMYWEKIEWGIILRKLEEQLCSQSADVLE 100
           ASSCENYRVWTMYWEKIEWGIILRKLEEQLCSQSADVLE
Sbjct: 61  ASSCENYRVWTMYWEKIEWGIILRKLEEQLCSQSADVLE 99

[Close]
BLAST of Carg13306 vs. NCBI nr
Match: XP_031740521.1 (uncharacterized protein LOC101220293 [Cucumis sativus] >XP_031740522.1 uncharacterized protein LOC101220293 [Cucumis sativus] >KAE8649679.1 hypothetical protein Csa_012121 [Cucumis sativus])

HSP 1 Score: 90.9 bits (224), Expect = 6.7e-15
Identity = 41/41 (100.00%), Postives = 41/41 (100.00%), Query Frame = 0 

Query: 1  MPHRTRPMTALLVFTGLNVVLVSTITPVYDFVCFHPYWERR 42
          MPHRTRPMTALLVFTGLNVVLVSTITPVYDFVCFHPYWERR
Sbjct: 1  MPHRTRPMTALLVFTGLNVVLVSTITPVYDFVCFHPYWERR 41

[Close]
BLAST of Carg13306 vs. NCBI nr
Match: XP_038882345.1 (uncharacterized protein LOC120073600 [Benincasa hispida])

HSP 1 Score: 90.9 bits (224), Expect = 6.7e-15
Identity = 41/41 (100.00%), Postives = 41/41 (100.00%), Query Frame = 0 

Query: 1  MPHRTRPMTALLVFTGLNVVLVSTITPVYDFVCFHPYWERR 42
          MPHRTRPMTALLVFTGLNVVLVSTITPVYDFVCFHPYWERR
Sbjct: 1  MPHRTRPMTALLVFTGLNVVLVSTITPVYDFVCFHPYWERR 41

[Close]
BLAST of Carg13306 vs. NCBI nr
Match: XP_022153946.1 (uncharacterized protein LOC111021335 [Momordica charantia])

HSP 1 Score: 90.9 bits (224), Expect = 6.7e-15
Identity = 41/41 (100.00%), Postives = 41/41 (100.00%), Query Frame = 0 

Query: 1  MPHRTRPMTALLVFTGLNVVLVSTITPVYDFVCFHPYWERR 42
          MPHRTRPMTALLVFTGLNVVLVSTITPVYDFVCFHPYWERR
Sbjct: 1  MPHRTRPMTALLVFTGLNVVLVSTITPVYDFVCFHPYWERR 41

[Close]
BLAST of Carg13306 vs. NCBI nr
Match: XP_022966645.1 (uncharacterized protein LOC111466268 [Cucurbita maxima] >XP_022966646.1 uncharacterized protein LOC111466268 [Cucurbita maxima])

HSP 1 Score: 90.9 bits (224), Expect = 6.7e-15
Identity = 41/41 (100.00%), Postives = 41/41 (100.00%), Query Frame = 0 

Query: 1  MPHRTRPMTALLVFTGLNVVLVSTITPVYDFVCFHPYWERR 42
          MPHRTRPMTALLVFTGLNVVLVSTITPVYDFVCFHPYWERR
Sbjct: 1  MPHRTRPMTALLVFTGLNVVLVSTITPVYDFVCFHPYWERR 41

[Close]
BLAST of Carg13306 vs. ExPASy TrEMBL
Match: A0A6J1HS71 (uncharacterized protein LOC111466268 OS=Cucurbita maxima OX=3661 GN=LOC111466268 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 3.2e-15
Identity = 41/41 (100.00%), Postives = 41/41 (100.00%), Query Frame = 0 

Query: 1  MPHRTRPMTALLVFTGLNVVLVSTITPVYDFVCFHPYWERR 42
          MPHRTRPMTALLVFTGLNVVLVSTITPVYDFVCFHPYWERR
Sbjct: 1  MPHRTRPMTALLVFTGLNVVLVSTITPVYDFVCFHPYWERR 41

[Close]
BLAST of Carg13306 vs. ExPASy TrEMBL
Match: A0A6J1EUP9 (uncharacterized protein LOC111438118 OS=Cucurbita moschata OX=3662 GN=LOC111438118 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 3.2e-15
Identity = 41/41 (100.00%), Postives = 41/41 (100.00%), Query Frame = 0 

Query: 1  MPHRTRPMTALLVFTGLNVVLVSTITPVYDFVCFHPYWERR 42
          MPHRTRPMTALLVFTGLNVVLVSTITPVYDFVCFHPYWERR
Sbjct: 1  MPHRTRPMTALLVFTGLNVVLVSTITPVYDFVCFHPYWERR 41

[Close]
BLAST of Carg13306 vs. ExPASy TrEMBL
Match: A0A6J1DM83 (uncharacterized protein LOC111021335 OS=Momordica charantia OX=3673 GN=LOC111021335 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 3.2e-15
Identity = 41/41 (100.00%), Postives = 41/41 (100.00%), Query Frame = 0 

Query: 1  MPHRTRPMTALLVFTGLNVVLVSTITPVYDFVCFHPYWERR 42
          MPHRTRPMTALLVFTGLNVVLVSTITPVYDFVCFHPYWERR
Sbjct: 1  MPHRTRPMTALLVFTGLNVVLVSTITPVYDFVCFHPYWERR 41

[Close]
BLAST of Carg13306 vs. ExPASy TrEMBL
Match: A0A6P3YS46 (uncharacterized protein LOC107403960 OS=Ziziphus jujuba OX=326968 GN=LOC107403960 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 4.2e-15
Identity = 40/41 (97.56%), Postives = 41/41 (100.00%), Query Frame = 0 

Query: 1  MPHRTRPMTALLVFTGLNVVLVSTITPVYDFVCFHPYWERR 42
          MPHRTRPMTALLVFTGLNV+LVSTITPVYDFVCFHPYWERR
Sbjct: 1  MPHRTRPMTALLVFTGLNVILVSTITPVYDFVCFHPYWERR 41

[Close]
BLAST of Carg13306 vs. ExPASy TrEMBL
Match: A0A067K479 (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_18418 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 7.2e-15
Identity = 44/60 (73.33%), Postives = 50/60 (83.33%), Query Frame = 0 

Query: 1  MPHRTRPMTALLVFTGLNVVLVSTITPVYDFVCFHPYWERRDICK---VSLEKVKLQLAE 58
          MPHRTRPMTALLVFTGLNVVLVSTITPVYDFVCF PYWERRD       S+E+++  L++
Sbjct: 1  MPHRTRPMTALLVFTGLNVVLVSTITPVYDFVCFLPYWERRDSTNSGGKSIEELECDLSD 60

[Close]
BLAST of Carg13306 vs. TAIR 10
Match: AT5G09225.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 76.3 bits (186), Expect = 1.6e-14
Identity = 33/41 (80.49%), Postives = 36/41 (87.80%), Query Frame = 0 

Query: 1  MPHRTRPMTALLVFTGLNVVLVSTITPVYDFVCFHPYWERR 42
          MPHRTRP+  LL+FTG+N VLV TITPVYDFVCF PYWERR
Sbjct: 1  MPHRTRPLKGLLLFTGINFVLVQTITPVYDFVCFLPYWERR 41

The following BLAST results are available for this feature:
BLAST of Carg13306 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7027425.11.3e-50100.00hypothetical protein SDJN02_11438 [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_031740521.16.7e-15100.00uncharacterized protein LOC101220293 [Cucumis sativus] >XP_031740522.1 uncharact... [more]
XP_038882345.16.7e-15100.00uncharacterized protein LOC120073600 [Benincasa hispida][more]
XP_022153946.16.7e-15100.00uncharacterized protein LOC111021335 [Momordica charantia][more]
XP_022966645.16.7e-15100.00uncharacterized protein LOC111466268 [Cucurbita maxima] >XP_022966646.1 uncharac... [more]
BLAST of Carg13306 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg13306 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1HS713.2e-15100.00uncharacterized protein LOC111466268 OS=Cucurbita maxima OX=3661 GN=LOC111466268... [more]
A0A6J1EUP93.2e-15100.00uncharacterized protein LOC111438118 OS=Cucurbita moschata OX=3662 GN=LOC1114381... [more]
A0A6J1DM833.2e-15100.00uncharacterized protein LOC111021335 OS=Momordica charantia OX=3673 GN=LOC111021... [more]
A0A6P3YS464.2e-1597.56uncharacterized protein LOC107403960 OS=Ziziphus jujuba OX=326968 GN=LOC10740396... [more]
A0A067K4797.2e-1573.33Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_18418 PE=4 SV=1[more]
BLAST of Carg13306 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G09225.11.6e-1480.49unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR36392TRANSMEMBRANE PROTEINcoord: 1..47

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg13306-RACarg13306-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006139 nucleobase-containing compound metabolic process
biological_process GO:0006796 phosphate-containing compound metabolic process
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0019205 nucleobase-containing compound kinase activity