Carg13305 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg13305
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	sigma factor binding protein 2, chloroplastic-like
Location	Carg_Chr07: 6244309 .. 6244815 (-)
RNA-Seq Expression	Carg13305
Synteny	Carg13305

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACGGCGGCGGCGGCGGCGGCGGCAACCGCAACGACCACACATCTCTCGGCGGCGTCCGCCGACGAAAGCCAACGAAGAAAACAAAACAACCCAACAACAAAAAGAAACCCATCAAAGTTGTGTACATATCGAATCCAATGAAGGTTAAAACCAGTGCCTCTAAATTCATGGCTTTGGTCCAAGAGCTCACCGGCCAAGATGCCGACTTTCCCGACCCCTCTAAGTTCCACTCCTCCGACGAAGACGCCGGAGCCACCCCCGACCTCCTCCACAGCACGACCGCCGCCGGCCAGGACTATGATAGTCTAATGATGAATAATAATATCCCTACTACACTTGGTGTTGAGCTGCCGGCGGAGGACTACCTTGTTGGTAGCTTTTATGATGACTTTGATGACCTGATTCTTCCTCCTCCACTCATCGGAAACTTCTCCGGATTTCTACCAGCGGCTGAGGCGGCGGCGGCGGCGGCGGCGGTGATGTATGAATCTTATGCAATGTGA

mRNA sequence

ATGGACGGCGGCGGCGGCGGCGGCGGCAACCGCAACGACCACACATCTCTCGGCGGCGTCCGCCGACGAAAGCCAACGAAGAAAACAAAACAACCCAACAACAAAAAGAAACCCATCAAAGTTGTGTACATATCGAATCCAATGAAGGTTAAAACCAGTGCCTCTAAATTCATGGCTTTGGTCCAAGAGCTCACCGGCCAAGATGCCGACTTTCCCGACCCCTCTAAGTTCCACTCCTCCGACGAAGACGCCGGAGCCACCCCCGACCTCCTCCACAGCACGACCGCCGCCGGCCAGGACTATGATAGTCTAATGATGAATAATAATATCCCTACTACACTTGGTGTTGAGCTGCCGGCGGAGGACTACCTTGTTGGTAGCTTTTATGATGACTTTGATGACCTGATTCTTCCTCCTCCACTCATCGGAAACTTCTCCGGATTTCTACCAGCGGCTGAGGCGGCGGCGGCGGCGGCGGCGGTGATGTATGAATCTTATGCAATGTGA

Coding sequence (CDS)

ATGGACGGCGGCGGCGGCGGCGGCGGCAACCGCAACGACCACACATCTCTCGGCGGCGTCCGCCGACGAAAGCCAACGAAGAAAACAAAACAACCCAACAACAAAAAGAAACCCATCAAAGTTGTGTACATATCGAATCCAATGAAGGTTAAAACCAGTGCCTCTAAATTCATGGCTTTGGTCCAAGAGCTCACCGGCCAAGATGCCGACTTTCCCGACCCCTCTAAGTTCCACTCCTCCGACGAAGACGCCGGAGCCACCCCCGACCTCCTCCACAGCACGACCGCCGCCGGCCAGGACTATGATAGTCTAATGATGAATAATAATATCCCTACTACACTTGGTGTTGAGCTGCCGGCGGAGGACTACCTTGTTGGTAGCTTTTATGATGACTTTGATGACCTGATTCTTCCTCCTCCACTCATCGGAAACTTCTCCGGATTTCTACCAGCGGCTGAGGCGGCGGCGGCGGCGGCGGCGGTGATGTATGAATCTTATGCAATGTGA

Protein sequence

MDGGGGGGGNRNDHTSLGGVRRRKPTKKTKQPNNKKKPIKVVYISNPMKVKTSASKFMALVQELTGQDADFPDPSKFHSSDEDAGATPDLLHSTTAAGQDYDSLMMNNNIPTTLGVELPAEDYLVGSFYDDFDDLILPPPLIGNFSGFLPAAEAAAAAAAVMYESYAM

Homology

[Close]

BLAST of Carg13305 vs. NCBI nr
Match: KAG7027424.1 (Sigma factor binding protein 1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 325.1 bits (832), Expect = 3.6e-85
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0


Query: 1   MDGGGGGGGNRNDHTSLGGVRRRKPTKKTKQPNNKKKPIKVVYISNPMKVKTSASKFMAL 60
           MDGGGGGGGNRNDHTSLGGVRRRKPTKKTKQPNNKKKPIKVVYISNPMKVKTSASKFMAL
Sbjct: 1   MDGGGGGGGNRNDHTSLGGVRRRKPTKKTKQPNNKKKPIKVVYISNPMKVKTSASKFMAL 60

Query: 61  VQELTGQDADFPDPSKFHSSDEDAGATPDLLHSTTAAGQDYDSLMMNNNIPTTLGVELPA 120
           VQELTGQDADFPDPSKFHSSDEDAGATPDLLHSTTAAGQDYDSLMMNNNIPTTLGVELPA
Sbjct: 61  VQELTGQDADFPDPSKFHSSDEDAGATPDLLHSTTAAGQDYDSLMMNNNIPTTLGVELPA 120

Query: 121 EDYLVGSFYDDFDDLILPPPLIGNFSGFLPAAEAAAAAAAVMYESYAM 169
           EDYLVGSFYDDFDDLILPPPLIGNFSGFLPAAEAAAAAAAVMYESYAM
Sbjct: 121 EDYLVGSFYDDFDDLILPPPLIGNFSGFLPAAEAAAAAAAVMYESYAM 168

[Close]

BLAST of Carg13305 vs. NCBI nr
Match: XP_022931925.1 (sigma factor binding protein 1, chloroplastic-like [Cucurbita moschata] >KAG6595416.1 Sigma factor binding protein 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 314.7 bits (805), Expect = 4.8e-82
Identity = 164/168 (97.62%), Postives = 164/168 (97.62%), Query Frame = 0


Query: 1   MDGGGGGGGNRNDHTSLGGVRRRKPTKKTKQPNNKKKPIKVVYISNPMKVKTSASKFMAL 60
           MDGGGGGGGNRNDHTSLGGVRRRKPTKKTKQPNNKKKPIKVVYISNPMKVKTSASKFMAL
Sbjct: 1   MDGGGGGGGNRNDHTSLGGVRRRKPTKKTKQPNNKKKPIKVVYISNPMKVKTSASKFMAL 60

Query: 61  VQELTGQDADFPDPSKFHSSDEDAGATPDLLHSTTAAGQDYDSLMMNNNIPTTLGVELPA 120
           VQELTGQDADFPDPSKFHSSDEDAGATPDLLHSTTAAGQDYDSLMMNNNIPTTLGVELPA
Sbjct: 61  VQELTGQDADFPDPSKFHSSDEDAGATPDLLHSTTAAGQDYDSLMMNNNIPTTLGVELPA 120

Query: 121 EDYLVGSFYDDFDDLILPPPLIGNFSGFLPAAEAAAAAAAVMYESYAM 169
           EDYLVGSFYDDFDDLILPPPLIGNFSGFLPAAE    AAAVMYESYAM
Sbjct: 121 EDYLVGSFYDDFDDLILPPPLIGNFSGFLPAAE----AAAVMYESYAM 164

[Close]

BLAST of Carg13305 vs. NCBI nr
Match: XP_023518833.1 (uncharacterized protein LOC111782231 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 292.0 bits (746), Expect = 3.4e-75
Identity = 156/166 (93.98%), Postives = 157/166 (94.58%), Query Frame = 0


Query: 4   GGGGGGNRNDHTSLGGVRRRKPTKKTKQPNNKKKPIKVVYISNPMKVKTSASKFMALVQE 63
           GGGGGGNRNDHTSLGGVRRRKPTKKT QPNNKKKPIKVVYISNPMKVKTSASKFMALVQE
Sbjct: 3   GGGGGGNRNDHTSLGGVRRRKPTKKTNQPNNKKKPIKVVYISNPMKVKTSASKFMALVQE 62

Query: 64  LTGQDADFPDPSKFHSSDEDAGATPDLLHST-TAAGQDYDSLMMNNNIPTTLGVELPAED 123
           LTGQDADFPDPSKFHSSD DAGATPDLLHST  AA QDYDSL MNNNIPTTLGVELPAED
Sbjct: 63  LTGQDADFPDPSKFHSSDVDAGATPDLLHSTAAAAAQDYDSLTMNNNIPTTLGVELPAED 122

Query: 124 YLVGSFYDDFDDLILPPPLIGNFSGFLPAAEAAAAAAAVMYESYAM 169
           YL+GSFYDDFDDLILPPPLIGNFS FLPAAE  AAAAAVMYESYAM
Sbjct: 123 YLLGSFYDDFDDLILPPPLIGNFSEFLPAAE--AAAAAVMYESYAM 166

[Close]

BLAST of Carg13305 vs. NCBI nr
Match: XP_022966643.1 (uncharacterized protein LOC111466266 [Cucurbita maxima])

HSP 1 Score: 285.8 bits (730), Expect = 2.4e-73
Identity = 151/165 (91.52%), Postives = 154/165 (93.33%), Query Frame = 0


Query: 4   GGGGGGNRNDHTSLGGVRRRKPTKKTKQPNNKKKPIKVVYISNPMKVKTSASKFMALVQE 63
           GGGGGGN NDHT LGGVRRRKPTKKTKQPNNKKKPIKVVYISNPMKVKTSAS FMALVQE
Sbjct: 3   GGGGGGNLNDHTDLGGVRRRKPTKKTKQPNNKKKPIKVVYISNPMKVKTSASNFMALVQE 62

Query: 64  LTGQDADFPDPSKFHSSDEDAGATPDLLHSTTAAGQDYDSLMMNNNIPTTLGVELPAEDY 123
           LTGQDADFPDPSKF SSDE AGATP LLHST AAGQ+Y SLMMNNNIPTTLGVELPAED+
Sbjct: 63  LTGQDADFPDPSKFDSSDEVAGATPGLLHSTAAAGQEYGSLMMNNNIPTTLGVELPAEDF 122

Query: 124 LVGSFYDDFDDLILPPPLIGNFSGFLPAAEAAAAAAAVMYESYAM 169
           LVGSFYDDFDDLILPPPLIGNFSGFLPAAE  A AAA+MYESYAM
Sbjct: 123 LVGSFYDDFDDLILPPPLIGNFSGFLPAAE--ATAAAMMYESYAM 165

[Close]

BLAST of Carg13305 vs. NCBI nr
Match: XP_038882812.1 (sigma factor binding protein 2, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 186.4 bits (472), Expect = 2.0e-43
Identity = 111/166 (66.87%), Postives = 126/166 (75.90%), Query Frame = 0


Query: 7   GGGNRNDHTSLGGVRRRKPTKKTKQPNNKKKPIKVVYISNPMKVKTSASKFMALVQELTG 66
           G    N+H  L  V RRKPTKKTKQP NKKKPIKVVYISNPMKV+TSASKFMALVQELTG
Sbjct: 4   GADTGNNHRILDAVNRRKPTKKTKQP-NKKKPIKVVYISNPMKVQTSASKFMALVQELTG 63

Query: 67  QDADFPDPSKFHSSDEDAG-ATPDLLHSTTAAGQDYD----SLMMNNNIPTTLGVELPAE 126
           +DADFPDPSKF  S    G A+ DLLH+T + G D +    +L+MNNN   +L VELP +
Sbjct: 64  RDADFPDPSKFSPSAVCGGAASSDLLHNTASGGGDDEHGASNLIMNNN-NCSLAVELPVD 123

Query: 127 DYLVGSFYDDFDDLILPPPLIGNFSGFLPAAEAAAAAAAVMYESYA 168
           D ++GSFYDDFDDLI PPP+IGNFSG LP      AAAAV+YESYA
Sbjct: 124 DDILGSFYDDFDDLIFPPPVIGNFSGLLP------AAAAVVYESYA 161

[Close]

BLAST of Carg13305 vs. ExPASy Swiss-Prot
Match: Q9LDH1 (Sigma factor binding protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SIB1 PE=1 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 6.3e-08
Identity = 47/134 (35.07%), Postives = 58/134 (43.28%), Query Frame = 0


Query: 23  RKPTKKTKQPNNKKKPIKVVYISNPMKVKTSASKFMALVQELTGQDADFPDPSKFHSSDE 82
           RK  K+ K+  +  KPIKV YISNPM+V+T ASKF  LVQELTGQDA    P   +S   
Sbjct: 24  RKSPKQKKKTTSTNKPIKVRYISNPMRVQTCASKFRELVQELTGQDAVDLQPEPIYSPSS 83

Query: 83  D--------AGATPDLLHSTTAAGQDYDSLMMNNNIPTTLGVELPAEDYLVGSFYDDFDD 142
           D            P +LH      +D D     N                        +D
Sbjct: 84  DDHNLSPPAENLAPRVLHQEPFGERDSDCYEPLN-----------------------AED 134

Query: 143 LILPPPLIGNFSGF 149
           + LP  +   FSGF
Sbjct: 144 MFLPDQMSAGFSGF 134

[Close]

BLAST of Carg13305 vs. ExPASy Swiss-Prot
Match: O80669 (Sigma factor binding protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SIB2 PE=1 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.5e-06
Identity = 34/61 (55.74%), Postives = 41/61 (67.21%), Query Frame = 0


Query: 23 RKPTKKTKQPNNKKKPIKVVYISNPMKVKTSASKFMALVQELTGQD-ADF-PDPSKFHSS 82
          R P K+ ++     KPIKV YISNPM+V+T  SKF  LVQELTGQD AD  P P+ F + 
Sbjct: 21 RIPPKQKRKSTTTHKPIKVRYISNPMRVETCPSKFRELVQELTGQDAADLPPSPTTFTAV 80

[Close]

BLAST of Carg13305 vs. ExPASy TrEMBL
Match: A0A6J1F0S9 (sigma factor binding protein 1, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111438200 PE=4 SV=1)

HSP 1 Score: 314.7 bits (805), Expect = 2.3e-82
Identity = 164/168 (97.62%), Postives = 164/168 (97.62%), Query Frame = 0


Query: 1   MDGGGGGGGNRNDHTSLGGVRRRKPTKKTKQPNNKKKPIKVVYISNPMKVKTSASKFMAL 60
           MDGGGGGGGNRNDHTSLGGVRRRKPTKKTKQPNNKKKPIKVVYISNPMKVKTSASKFMAL
Sbjct: 1   MDGGGGGGGNRNDHTSLGGVRRRKPTKKTKQPNNKKKPIKVVYISNPMKVKTSASKFMAL 60

Query: 61  VQELTGQDADFPDPSKFHSSDEDAGATPDLLHSTTAAGQDYDSLMMNNNIPTTLGVELPA 120
           VQELTGQDADFPDPSKFHSSDEDAGATPDLLHSTTAAGQDYDSLMMNNNIPTTLGVELPA
Sbjct: 61  VQELTGQDADFPDPSKFHSSDEDAGATPDLLHSTTAAGQDYDSLMMNNNIPTTLGVELPA 120

Query: 121 EDYLVGSFYDDFDDLILPPPLIGNFSGFLPAAEAAAAAAAVMYESYAM 169
           EDYLVGSFYDDFDDLILPPPLIGNFSGFLPAAE    AAAVMYESYAM
Sbjct: 121 EDYLVGSFYDDFDDLILPPPLIGNFSGFLPAAE----AAAVMYESYAM 164

[Close]

BLAST of Carg13305 vs. ExPASy TrEMBL
Match: A0A6J1HSP6 (uncharacterized protein LOC111466266 OS=Cucurbita maxima OX=3661 GN=LOC111466266 PE=4 SV=1)

HSP 1 Score: 285.8 bits (730), Expect = 1.2e-73
Identity = 151/165 (91.52%), Postives = 154/165 (93.33%), Query Frame = 0


Query: 4   GGGGGGNRNDHTSLGGVRRRKPTKKTKQPNNKKKPIKVVYISNPMKVKTSASKFMALVQE 63
           GGGGGGN NDHT LGGVRRRKPTKKTKQPNNKKKPIKVVYISNPMKVKTSAS FMALVQE
Sbjct: 3   GGGGGGNLNDHTDLGGVRRRKPTKKTKQPNNKKKPIKVVYISNPMKVKTSASNFMALVQE 62

Query: 64  LTGQDADFPDPSKFHSSDEDAGATPDLLHSTTAAGQDYDSLMMNNNIPTTLGVELPAEDY 123
           LTGQDADFPDPSKF SSDE AGATP LLHST AAGQ+Y SLMMNNNIPTTLGVELPAED+
Sbjct: 63  LTGQDADFPDPSKFDSSDEVAGATPGLLHSTAAAGQEYGSLMMNNNIPTTLGVELPAEDF 122

Query: 124 LVGSFYDDFDDLILPPPLIGNFSGFLPAAEAAAAAAAVMYESYAM 169
           LVGSFYDDFDDLILPPPLIGNFSGFLPAAE  A AAA+MYESYAM
Sbjct: 123 LVGSFYDDFDDLILPPPLIGNFSGFLPAAE--ATAAAMMYESYAM 165

[Close]

BLAST of Carg13305 vs. ExPASy TrEMBL
Match: A0A6J1EY87 (sigma factor binding protein 2, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111439409 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 3.5e-38
Identity = 107/166 (64.46%), Postives = 121/166 (72.89%), Query Frame = 0


Query: 4   GGGGGGNRNDHTSLGGVRRRKPTKKTKQPNNKKKPIKVVYISNPMKVKTSASKFMALVQE 63
           G  G G  N H  L GV RRKPTKKTKQP NK KPIKVVYISNPMKV+ SAS FMALVQ+
Sbjct: 3   GSAGTGTGNSHRLLDGVHRRKPTKKTKQP-NKNKPIKVVYISNPMKVQISASGFMALVQQ 62

Query: 64  LTGQDADFPDPSKF-HSSDEDAGATPDLLHSTTAAGQDYDSLMMNNNIPTTLGVELPAE- 123
           LTGQDADFPDPS F  ++  DA A PD +H+TTA     D+ +MNNN P +L VE+P E 
Sbjct: 63  LTGQDADFPDPSTFPPAAVRDAAAFPD-IHNTTA-----DANLMNNNNP-SLTVEIPMED 122

Query: 124 DYLVGSFYDDFDDLILPPPLIGNFSGFLPAAEAAAAAAAVMYESYA 168
           D  +GSFYDD DDLI PPP+IGN+   LP    AAAA AV+YESYA
Sbjct: 123 DPFLGSFYDDIDDLIFPPPVIGNYPALLP----AAAATAVLYESYA 156

[Close]

BLAST of Carg13305 vs. ExPASy TrEMBL
Match: A0A0A0L3J8 (VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G431960 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 1.3e-37
Identity = 106/172 (61.63%), Postives = 127/172 (73.84%), Query Frame = 0


Query: 1   MDGGGGGGGNRNDHTSLGGVRRRKPTKKTKQPNNK-KKPIKVVYISNPMKVKTSASKFMA 60
           MD G   G   +DH +L  V RRKPTKKTKQP N+ KKPIKVVYISNPMKV+TSAS FMA
Sbjct: 1   MDAGTATG---SDHRTLDAVYRRKPTKKTKQPKNRLKKPIKVVYISNPMKVQTSASGFMA 60

Query: 61  LVQELTGQDADFPDPSKFHSSDE-DAGATPDLLHSTTAAGQDYD---SLMMNNNIPTTLG 120
           LVQELTGQDADFPDPSKF  S   D  A+ D L++T ++G + D   +L++N+N  ++L 
Sbjct: 61  LVQELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTISSGGEDDGATNLIVNSN-NSSLV 120

Query: 121 VELPAEDYLVGSFYDDFDDLILPPPLIGNFSGFLPAAEAAAAAAAVMYESYA 168
            E+PAED ++GSFYDDFDDLI P P+IGNFSG LP     A  AAV+YES A
Sbjct: 121 DEVPAEDDILGSFYDDFDDLIFPSPVIGNFSGLLP-----APVAAVVYESNA 163

[Close]

BLAST of Carg13305 vs. ExPASy TrEMBL
Match: A0A6J1HS32 (sigma factor binding protein 2, chloroplastic-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111467277 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 7.4e-36
Identity = 105/165 (63.64%), Postives = 116/165 (70.30%), Query Frame = 0


Query: 4   GGGGGGNRNDHTSLGGVRRRKPTKKTKQPNNKKKPIKVVYISNPMKVKTSASKFMALVQE 63
           G  G G  N H  L GV RRKPTKKTKQP NK KPIKVVYISNPMKV+ SAS FMALVQ+
Sbjct: 3   GSAGTGTGNSHRLLDGVHRRKPTKKTKQP-NKNKPIKVVYISNPMKVQISASGFMALVQQ 62

Query: 64  LTGQDADFPDPSKFHSSDEDAGATPDLLHSTTAAGQDYDSLMMNNNIPTTLGVELPAE-D 123
           LTGQDA+FPD SKF      A A PD +H TTA      +LMMNNN   +L VE P E D
Sbjct: 63  LTGQDAEFPDSSKF----PPAAAFPD-IHDTTADA----NLMMNNN--PSLTVEPPMEDD 122

Query: 124 YLVGSFYDDFDDLILPPPLIGNFSGFLPAAEAAAAAAAVMYESYA 168
            L+G+FYDD DDLI PPP+IGN+   LP    AAAA AV+YESYA
Sbjct: 123 PLLGTFYDDIDDLIFPPPVIGNYPALLP----AAAATAVLYESYA 151

[Close]

BLAST of Carg13305 vs. TAIR 10
Match: AT3G56710.1 (sigma factor binding protein 1 )

HSP 1 Score: 58.9 bits (141), Expect = 4.5e-09
Identity = 47/134 (35.07%), Postives = 58/134 (43.28%), Query Frame = 0


Query: 23  RKPTKKTKQPNNKKKPIKVVYISNPMKVKTSASKFMALVQELTGQDADFPDPSKFHSSDE 82
           RK  K+ K+  +  KPIKV YISNPM+V+T ASKF  LVQELTGQDA    P   +S   
Sbjct: 24  RKSPKQKKKTTSTNKPIKVRYISNPMRVQTCASKFRELVQELTGQDAVDLQPEPIYSPSS 83

Query: 83  D--------AGATPDLLHSTTAAGQDYDSLMMNNNIPTTLGVELPAEDYLVGSFYDDFDD 142
           D            P +LH      +D D     N                        +D
Sbjct: 84  DDHNLSPPAENLAPRVLHQEPFGERDSDCYEPLN-----------------------AED 134

Query: 143 LILPPPLIGNFSGF 149
           + LP  +   FSGF
Sbjct: 144 MFLPDQMSAGFSGF 134

[Close]

BLAST of Carg13305 vs. TAIR 10
Match: AT2G41180.1 (VQ motif-containing protein )

HSP 1 Score: 54.3 bits (129), Expect = 1.1e-07
Identity = 34/61 (55.74%), Postives = 41/61 (67.21%), Query Frame = 0


Query: 23 RKPTKKTKQPNNKKKPIKVVYISNPMKVKTSASKFMALVQELTGQD-ADF-PDPSKFHSS 82
          R P K+ ++     KPIKV YISNPM+V+T  SKF  LVQELTGQD AD  P P+ F + 
Sbjct: 21 RIPPKQKRKSTTTHKPIKVRYISNPMRVETCPSKFRELVQELTGQDAADLPPSPTTFTAV 80

The following BLAST results are available for this feature:

BLAST of Carg13305 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7027424.1	3.6e-85	100.00	Sigma factor binding protein 1, chloroplastic, partial [Cucurbita argyrosperma s...	[more]
XP_022931925.1	4.8e-82	97.62	sigma factor binding protein 1, chloroplastic-like [Cucurbita moschata] >KAG6595...	[more]
XP_023518833.1	3.4e-75	93.98	uncharacterized protein LOC111782231 [Cucurbita pepo subsp. pepo]	[more]
XP_022966643.1	2.4e-73	91.52	uncharacterized protein LOC111466266 [Cucurbita maxima]	[more]
XP_038882812.1	2.0e-43	66.87	sigma factor binding protein 2, chloroplastic-like [Benincasa hispida]	[more]

BLAST of Carg13305 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LDH1	6.3e-08	35.07	Sigma factor binding protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN...	[more]
O80669	1.5e-06	55.74	Sigma factor binding protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN...	[more]

BLAST of Carg13305 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F0S9	2.3e-82	97.62	sigma factor binding protein 1, chloroplastic-like OS=Cucurbita moschata OX=3662...	[more]
A0A6J1HSP6	1.2e-73	91.52	uncharacterized protein LOC111466266 OS=Cucurbita maxima OX=3661 GN=LOC111466266...	[more]
A0A6J1EY87	3.5e-38	64.46	sigma factor binding protein 2, chloroplastic-like OS=Cucurbita moschata OX=3662...	[more]
A0A0A0L3J8	1.3e-37	61.63	VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G431960 PE=4 SV=...	[more]
A0A6J1HS32	7.4e-36	63.64	sigma factor binding protein 2, chloroplastic-like isoform X1 OS=Cucurbita maxim...	[more]

BLAST of Carg13305 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G56710.1	4.5e-09	35.07	sigma factor binding protein 1	[more]
AT2G41180.1	1.1e-07	55.74	VQ motif-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008889	VQ	PFAM	PF05678	VQ	coord: 44..69 e-value: 1.4E-11 score: 43.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 21..35
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..39
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 68..90
None	No IPR available	PANTHER	PTHR33624:SF2	SIGMA FACTOR BINDING PROTEIN 1, CHLOROPLASTIC	coord: 21..151
IPR039335	Sigma factor binding protein 1/2	PANTHER	PTHR33624	SIGMA FACTOR BINDING PROTEIN 1, CHLOROPLASTIC	coord: 21..151

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg13305-RA	Carg13305-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051091	positive regulation of DNA-binding transcription factor activity