Carg13273 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg13273
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Unknown protein
Location	Carg_Chr07: 5993531 .. 5994106 (+)
RNA-Seq Expression	Carg13273
Synteny	Carg13273

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATTTGACGATGGATTACAGGAGCAATATGAAAAGAAATATGATCCAGCAAAACAAAACAGTTTTGAAAGCGGGTCAACTGCCAAAGTCGGACCGGATCTAATGCTGAAAGGAAAAGGATGGTATGTTTTTTTTTTTTTTCTTCTTTTTCCAAAATCACCCGTTCTCAACACAGGTCAGGATCATCTAGGCAAGCTTTTTCCTAAAATTTCATTGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAATAACCTAACAAGGATTACTCATAACCTGAGAAAGTTTAATGGACGACCTAAATCCATAAACCCCAGTCATCGACTTTTGCCAACCCTTATTGAGCTACTCATGTCATATAATCTACCGAGAGAGGTGTTTCCTTCTTTCATTAAGTCTAGTAAACTAAACTACTGCTTCTTAAAAATGATAGGAGGAGGAACATGAAGATGATACAGAGGAGGAGGAAAAGGAAGAACATGAAGATGATACAGAGGTGGAGGAGGAAAAGGAAGAACATGAAGATGATACAGAGGTGGAGGAAGAGGAAGAACATGAAGATGCAGAAGAAGAGTAA

mRNA sequence

AAATTTGACGATGGATTACAGGAGCAATATGAAAAGAAATATGATCCAGCAAAACAAAACAGTTTTGAAAGCGGGTCAACTGCCAAAGAGGAGGAACATGAAGATGATACAGAGGAGGAGGAAAAGGAAGAACATGAAGATGATACAGAGGTGGAGGAGGAAAAGGAAGAACATGAAGATGATACAGAGGTGGAGGAAGAGGAAGAACATGAAGATGCAGAAGAAGAGTAA

Coding sequence (CDS)

AAATTTGACGATGGATTACAGGAGCAATATGAAAAGAAATATGATCCAGCAAAACAAAACAGTTTTGAAAGCGGGTCAACTGCCAAAGAGGAGGAACATGAAGATGATACAGAGGAGGAGGAAAAGGAAGAACATGAAGATGATACAGAGGTGGAGGAGGAAAAGGAAGAACATGAAGATGATACAGAGGTGGAGGAAGAGGAAGAACATGAAGATGCAGAAGAAGAGTAA

Protein sequence

KFDDGLQEQYEKKYDPAKQNSFESGSTAKEEEHEDDTEEEEKEEHEDDTEVEEEKEEHEDDTEVEEEEEHEDAEEE

Homology

[Close]

BLAST of Carg13273 vs. NCBI nr
Match: KAG7027393.1 (hypothetical protein SDJN02_11405, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 112.5 bits (280), Expect = 1.6e-21
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 0


Query: 1  KFDDGLQEQYEKKYDPAKQNSFESGSTAKEEEHEDDTEEEEKEEHEDDTEVEEEKEEHED 60
          KFDDGLQEQYEKKYDPAKQNSFESGSTAKEEEHEDDTEEEEKEEHEDDTEVEEEKEEHED
Sbjct: 1  KFDDGLQEQYEKKYDPAKQNSFESGSTAKEEEHEDDTEEEEKEEHEDDTEVEEEKEEHED 60

Query: 61 DTEVEEEEEHEDAEEE 77
          DTEVEEEEEHEDAEEE
Sbjct: 61 DTEVEEEEEHEDAEEE 76

[Close]

BLAST of Carg13273 vs. NCBI nr
Match: KAG6595385.1 (hypothetical protein SDJN03_11938, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 59.3 bits (142), Expect = 1.7e-05
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = 0


Query: 1  KFDDGLQEQYEKKYDPAKQNSFESGSTAK 30
          KFDDGLQEQYEKKYDPAKQNSFESGSTAK
Sbjct: 17 KFDDGLQEQYEKKYDPAKQNSFESGSTAK 45

The following BLAST results are available for this feature:

BLAST of Carg13273 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7027393.1	1.6e-21	100.00	hypothetical protein SDJN02_11405, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6595385.1	1.7e-05	100.00	hypothetical protein SDJN03_11938, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Carg13273 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg13273 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg13273 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 28..76
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..76
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..18
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 32..76

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg13273-RA	Carg13273-RA	mRNA