Carg13262 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg13262
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr07: 5911807 .. 5912390 (+)
RNA-Seq ExpressionCarg13262
SyntenyCarg13262
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGACTTCAACTGGTCGGTGAGGTCAATTATGTAGGTTTTCTTGTCTTTGATTTTCCATGCCACTGTTTTCGCTGAAATTATTTTCGACTACGGCTTGCTGGATTTCTGCTTTCCGGCGTCTTCGCGTTCTTGCTTTCTGCCACTGTCTTCTTCAACCTTGCGTTGGTGGATCGTAGTTTCGGCAGGGATTGGCAGTCGATTGCAATTGCCTGCCGAGGTTTGATTCTTTCGTTGTTTTTCTTTCTCTTTTTGTTCTTTTATTCTTGGGTTGTTGTATTTTTTTTTTTTTTTTTTTTTTTTTTGTGTTTAGCTTAAGTGCTGCCAATTTGCAGAATAGAAGCGTCGGGAGTACGGAATTTTGCTTCCCTTCAGGTTGTTTGATTAGCTAGGGTTGCGGGTTTCGTTCTGCGAGTAATGCGGTTCGTTGTTGTTGTTGTTGTTGTTGTTTTTTACTTGAGAAGCTTGTAGTCGAAATGGTTGTAATTTCGTGTTGTTTGGGTTTTTTCTTGGACTTGCAGGGTTGTTTTGAATATTGGGTTACCAGTGAAGTTCACGACTTTCCAGTGTTTGAGGAATTGTGA

mRNA sequence

ATGCGACTTCAACTGGTCGGTGAGGTTTTCTTGTCTTTGATTTTCCATGCCACTGTTTTCGCTGAAATTATTTTCGACTACGGCTTGCTGGATTTCTGCTTTCCGGCGTCTTCGCGTTCTTGCTTTCTGCCACTGTCTTCTTCAACCTTGCGTTGGTGGATCGTAGTTTCGGCAGGGATTGGCAGTCGATTGCAATTGCCTGCCGAGGGTTGTTTTGAATATTGGGTTACCAGTGAAGTTCACGACTTTCCAGTGTTTGAGGAATTGTGA

Coding sequence (CDS)

ATGCGACTTCAACTGGTCGGTGAGGTTTTCTTGTCTTTGATTTTCCATGCCACTGTTTTCGCTGAAATTATTTTCGACTACGGCTTGCTGGATTTCTGCTTTCCGGCGTCTTCGCGTTCTTGCTTTCTGCCACTGTCTTCTTCAACCTTGCGTTGGTGGATCGTAGTTTCGGCAGGGATTGGCAGTCGATTGCAATTGCCTGCCGAGGGTTGTTTTGAATATTGGGTTACCAGTGAAGTTCACGACTTTCCAGTGTTTGAGGAATTGTGA

Protein sequence

MRLQLVGEVFLSLIFHATVFAEIIFDYGLLDFCFPASSRSCFLPLSSSTLRWWIVVSAGIGSRLQLPAEGCFEYWVTSEVHDFPVFEEL
Homology
[Close]
BLAST of Carg13262 vs. NCBI nr
Match: KAG7027382.1 (hypothetical protein SDJN02_11394, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 185.3 bits (469), Expect = 2.3e-43
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0 

Query: 1  MRLQLVGEVFLSLIFHATVFAEIIFDYGLLDFCFPASSRSCFLPLSSSTLRWWIVVSAGI 60
          MRLQLVGEVFLSLIFHATVFAEIIFDYGLLDFCFPASSRSCFLPLSSSTLRWWIVVSAGI
Sbjct: 1  MRLQLVGEVFLSLIFHATVFAEIIFDYGLLDFCFPASSRSCFLPLSSSTLRWWIVVSAGI 60

Query: 61 GSRLQLPAEGCFEYWVTSEVHDFPVFEEL 90
          GSRLQLPAEGCFEYWVTSEVHDFPVFEEL
Sbjct: 61 GSRLQLPAEGCFEYWVTSEVHDFPVFEEL 89

[Close]
BLAST of Carg13262 vs. NCBI nr
Match: KAG6595375.1 (hypothetical protein SDJN03_11928, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 125.9 bits (315), Expect = 1.7e-25
Identity = 61/62 (98.39%), Postives = 62/62 (100.00%), Query Frame = 0 

Query: 8  EVFLSLIFHATVFAEIIFDYGLLDFCFPASSRSCFLPLSSSTLRWWIVVSAGIGSRLQLP 67
          +VFLSLIFHATVFAEIIFDYGLLDFCFPASSRSCFLPLSSSTLRWWIVVSAGIGSRLQLP
Sbjct: 15 QVFLSLIFHATVFAEIIFDYGLLDFCFPASSRSCFLPLSSSTLRWWIVVSAGIGSRLQLP 74

Query: 68 AE 70
          AE
Sbjct: 75 AE 76

The following BLAST results are available for this feature:
BLAST of Carg13262 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7027382.12.3e-43100.00hypothetical protein SDJN02_11394, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6595375.11.7e-2598.39hypothetical protein SDJN03_11928, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Carg13262 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg13262 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg13262 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg13262-RACarg13262-RAmRNA