Carg13254 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg13254
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	RING/FYVE/PHD zinc finger superfamily protein
Location	Carg_Chr07: 5858833 .. 5859881 (-)
RNA-Seq Expression	Carg13254
Synteny	Carg13254

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AACCCATCTTCCTTTATTCTCTTCTGTGGCTAAATTTCATGGCTTTTTGAGTTTCTGATTCAGGGGTTTCTTAAAAATGGCGGCTTTGGAGACAGCCGGAGTTGATTTGGAGGAAGGGGGTCGTGGTGGTGACGGCGGACGGGGGGCGGAGGCGGGTGAAGTGAAGGTGCATTCAGAGAGGGATTGTAGGATTTGCCATTTGGGGTTGGAGAGCAACAGTAGTGAGTGTGGAACTGCAATTGAATTGGGCTGTTCTTGTAAGAATGATTTGGCTGCTGCCCACAAGCATTGTGCTGAAGCTTGGTTCAAAATCAGAGGAAACAAGTGAGTTTTAATTTCAAATCCCTTTCCAATTTCACGATTCTTAAACTGATCTGCTGAGAATTTGAATATAGATAGGTTCTTAGTTGGGATCTTTTTTTAGTGTTTTTGGGAAAGCTTGAGAAGGCTATAGAAAGGAAAAAATTAAAACAAAAACAATGCAATCTTAGTCAAAAGGAATGGAATGGAATAGAATATGGAATTGAGAAACGAAGCATTATAAAAAAGTTATTCAATTTGTCTTCACTTCATTAACTCTCTACCTTATAATATTATTCCCTTACCCTTCATACACATTAGAATCTCTCATTGATTTATTTTTAGAGTGTATGTCTTTAATAAAGAGGAGATTGGATGTCTTGACGGTACATTATTTGTATCATTCTTAACATATGTATCTTCTTAAGTGGTCCTTTTTTTTCTTTGGTTAGGACGTGTGAGATATGCCATTCTATTGTACAAAATGTAGGAGTACATGAACTCGAACAAATGGAGCAACTCCACGAGTTTAACAATGGGACACTATCGACAACCACGGTTGCAGCATCGGTGGCTGCTTCTCCCGATGGTGGTCGGAGGTTTTGGCAGGTTCATCGAGTCCTGAATTTTCTTCTTGCTTGTATTGTATTTGCTTTTGTCATATCTTGGTTGTTTCATTTCAATATGCGGTCATAAAACGGTTGTGTACAAAGAAAGGTTTCGATCTTTAAGTTAGGTCTATAAATTTT

mRNA sequence

AACCCATCTTCCTTTATTCTCTTCTGTGGCTAAATTTCATGGCTTTTTGAGTTTCTGATTCAGGGGTTTCTTAAAAATGGCGGCTTTGGAGACAGCCGGAGTTGATTTGGAGGAAGGGGGTCGTGGTGGTGACGGCGGACGGGGGGCGGAGGCGGGTGAAGTGAAGGTGCATTCAGAGAGGGATTGTAGGATTTGCCATTTGGGGTTGGAGAGCAACAGTAGTGAGTGTGGAACTGCAATTGAATTGGGCTGTTCTTGTAAGAATGATTTGGCTGCTGCCCACAAGCATTGTGCTGAAGCTTGGTTCAAAATCAGAGGAAACAAGACGTGTGAGATATGCCATTCTATTGTACAAAATGTAGGAGTACATGAACTCGAACAAATGGAGCAACTCCACGAGTTTAACAATGGGACACTATCGACAACCACGGTTGCAGCATCGGTGGCTGCTTCTCCCGATGGTGGTCGGAGGTTTTGGCAGGTTCATCGAGTCCTGAATTTTCTTCTTGCTTGTATTGTATTTGCTTTTGTCATATCTTGGTTGTTTCATTTCAATATGCGGTCATAAAACGGTTGTGTACAAAGAAAGGTTTCGATCTTTAAGTTAGGTCTATAAATTTT

Coding sequence (CDS)

ATGGCGGCTTTGGAGACAGCCGGAGTTGATTTGGAGGAAGGGGGTCGTGGTGGTGACGGCGGACGGGGGGCGGAGGCGGGTGAAGTGAAGGTGCATTCAGAGAGGGATTGTAGGATTTGCCATTTGGGGTTGGAGAGCAACAGTAGTGAGTGTGGAACTGCAATTGAATTGGGCTGTTCTTGTAAGAATGATTTGGCTGCTGCCCACAAGCATTGTGCTGAAGCTTGGTTCAAAATCAGAGGAAACAAGACGTGTGAGATATGCCATTCTATTGTACAAAATGTAGGAGTACATGAACTCGAACAAATGGAGCAACTCCACGAGTTTAACAATGGGACACTATCGACAACCACGGTTGCAGCATCGGTGGCTGCTTCTCCCGATGGTGGTCGGAGGTTTTGGCAGGTTCATCGAGTCCTGAATTTTCTTCTTGCTTGTATTGTATTTGCTTTTGTCATATCTTGGTTGTTTCATTTCAATATGCGGTCATAA

Protein sequence

MAALETAGVDLEEGGRGGDGGRGAEAGEVKVHSERDCRICHLGLESNSSECGTAIELGCSCKNDLAAAHKHCAEAWFKIRGNKTCEICHSIVQNVGVHELEQMEQLHEFNNGTLSTTTVAASVAASPDGGRRFWQVHRVLNFLLACIVFAFVISWLFHFNMRS

Homology

[Close]

BLAST of Carg13254 vs. NCBI nr
Match: KAG7027374.1 (hypothetical protein SDJN02_11386 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 337.0 bits (863), Expect = 8.8e-89
Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 0


Query: 1   MAALETAGVDLEEGGRGGDGGRGAEAGEVKVHSERDCRICHLGLESNSSECGTAIELGCS 60
           MAALETAGVDLEEGGRGGDGGRGAEAGEVKVHSERDCRICHLGLESNSSECGTAIELGCS
Sbjct: 1   MAALETAGVDLEEGGRGGDGGRGAEAGEVKVHSERDCRICHLGLESNSSECGTAIELGCS 60

Query: 61  CKNDLAAAHKHCAEAWFKIRGNKTCEICHSIVQNVGVHELEQMEQLHEFNNGTLSTTTVA 120
           CKNDLAAAHKHCAEAWFKIRGNKTCEICHSIVQNVGVHELEQMEQLHEFNNGTLSTTTVA
Sbjct: 61  CKNDLAAAHKHCAEAWFKIRGNKTCEICHSIVQNVGVHELEQMEQLHEFNNGTLSTTTVA 120

Query: 121 ASVAASPDGGRRFWQVHRVLNFLLACIVFAFVISWLFHFNMRS 164
           ASVAASPDGGRRFWQVHRVLNFLLACIVFAFVISWLFHFNMRS
Sbjct: 121 ASVAASPDGGRRFWQVHRVLNFLLACIVFAFVISWLFHFNMRS 163

[Close]

BLAST of Carg13254 vs. NCBI nr
Match: KAG6595366.1 (hypothetical protein SDJN03_11919, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 334.0 bits (855), Expect = 7.5e-88
Identity = 162/163 (99.39%), Postives = 162/163 (99.39%), Query Frame = 0


Query: 1   MAALETAGVDLEEGGRGGDGGRGAEAGEVKVHSERDCRICHLGLESNSSECGTAIELGCS 60
           MAALETAGVDLEEGGRGGDGGR AEAGEVKVHSERDCRICHLGLESNSSECGTAIELGCS
Sbjct: 1   MAALETAGVDLEEGGRGGDGGRRAEAGEVKVHSERDCRICHLGLESNSSECGTAIELGCS 60

Query: 61  CKNDLAAAHKHCAEAWFKIRGNKTCEICHSIVQNVGVHELEQMEQLHEFNNGTLSTTTVA 120
           CKNDLAAAHKHCAEAWFKIRGNKTCEICHSIVQNVGVHELEQMEQLHEFNNGTLSTTTVA
Sbjct: 61  CKNDLAAAHKHCAEAWFKIRGNKTCEICHSIVQNVGVHELEQMEQLHEFNNGTLSTTTVA 120

Query: 121 ASVAASPDGGRRFWQVHRVLNFLLACIVFAFVISWLFHFNMRS 164
           ASVAASPDGGRRFWQVHRVLNFLLACIVFAFVISWLFHFNMRS
Sbjct: 121 ASVAASPDGGRRFWQVHRVLNFLLACIVFAFVISWLFHFNMRS 163

[Close]

BLAST of Carg13254 vs. NCBI nr
Match: XP_023517920.1 (uncharacterized protein LOC111781512 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 318.2 bits (814), Expect = 4.2e-83
Identity = 159/164 (96.95%), Postives = 159/164 (96.95%), Query Frame = 0


Query: 1   MAALETAGVDLEEGGRGGDGGRGAEAGEVKVHSERDCRICHLGLESNSSECGTAIELGCS 60
           MAALETAGVDLEEGGRGG GGR AEAGEVKVHSERDCRICHLGLESNSSECGTAIELGCS
Sbjct: 1   MAALETAGVDLEEGGRGGHGGRRAEAGEVKVHSERDCRICHLGLESNSSECGTAIELGCS 60

Query: 61  CKNDLAAAHKHCAEAWFKIRGNKTCEICHSIVQNV-GVHELEQMEQLHEFNNGTLSTTTV 120
           CKNDLAAAHKHCAEAWFKIRGNKTCEICHSIVQNV GVHELEQMEQLHE NNGTLSTTTV
Sbjct: 61  CKNDLAAAHKHCAEAWFKIRGNKTCEICHSIVQNVGGVHELEQMEQLHELNNGTLSTTTV 120

Query: 121 AASVAASPDGGRRFWQVHRVLNFLLACIVFAFVISWLFHFNMRS 164
           AASVAA PDGGRRFWQVHRVLNFLLACIVFAFVISWLFHFNMRS
Sbjct: 121 AASVAA-PDGGRRFWQVHRVLNFLLACIVFAFVISWLFHFNMRS 163

[Close]

BLAST of Carg13254 vs. NCBI nr
Match: XP_038883458.1 (uncharacterized protein LOC120074413 [Benincasa hispida])

HSP 1 Score: 244.6 bits (623), Expect = 6.0e-61
Identity = 127/166 (76.51%), Postives = 138/166 (83.13%), Query Frame = 0


Query: 1   MAALETAGVDLEEGGRGGDGGRGAEAG-EVKVHS-ERDCRICHLGLESNSSECGTAIELG 60
           MAALETAG DLE+G R     RG+  G EVKV++ ERDCRICHLGL SNS+E G  IELG
Sbjct: 1   MAALETAGADLEKGWRQTAAERGSGVGEEVKVNNLERDCRICHLGLVSNSNEFGVGIELG 60

Query: 61  CSCKNDLAAAHKHCAEAWFKIRGNKTCEICHSIVQNV-GVHELEQMEQLHEFNNGTLSTT 120
           C CKNDL+ AHKHCAEAWFKIRGNKTCEICHSIV+NV  V E EQ EQLHE NNGT+ST 
Sbjct: 61  CCCKNDLSTAHKHCAEAWFKIRGNKTCEICHSIVRNVMVVREPEQTEQLHESNNGTVSTA 120

Query: 121 TVAASVAASPDGGRRFWQVHRVLNFLLACIVFAFVISWLFHFNMRS 164
           TVAASVAA+P GGR FW VHRVLNFLLAC+VFAFVISWLFHFN+ S
Sbjct: 121 TVAASVAATPSGGRSFWHVHRVLNFLLACMVFAFVISWLFHFNVPS 166

[Close]

BLAST of Carg13254 vs. NCBI nr
Match: XP_022151515.1 (uncharacterized protein LOC111019441, partial [Momordica charantia])

HSP 1 Score: 234.2 bits (596), Expect = 8.1e-58
Identity = 118/165 (71.52%), Postives = 131/165 (79.39%), Query Frame = 0


Query: 1   MAALETAG-VDLEEGGRGGDGGRGAEAGEVKVHSERDCRICHLGLESNSSECGTAIELGC 60
           +AA++T G  DLE+G     G R  EA      +ERDCRICHLGLES+S ECG  IELGC
Sbjct: 18  IAAVDTPGSADLEQGRCSSGGERRREA------AERDCRICHLGLESSSDECGIGIELGC 77

Query: 61  SCKNDLAAAHKHCAEAWFKIRGNKTCEICHSIVQNV-GVHELEQMEQLHEFNNGTLSTTT 120
           SCKNDL AAHKHCAEAWFKIRGNKTCEICHS+V NV G HE+E +EQL E NN T+STTT
Sbjct: 78  SCKNDLGAAHKHCAEAWFKIRGNKTCEICHSVVSNVIGAHEVEPVEQLSESNNATVSTTT 137

Query: 121 VAASVAASPDGGRRFWQVHRVLNFLLACIVFAFVISWLFHFNMRS 164
           VA SV   P+GGR FWQVHRVLNFLLAC+VFAFVISWLFHFN+ S
Sbjct: 138 VATSVTGGPNGGRSFWQVHRVLNFLLACMVFAFVISWLFHFNVPS 176

[Close]

BLAST of Carg13254 vs. ExPASy TrEMBL
Match: A0A6J1DBE4 (uncharacterized protein LOC111019441 OS=Momordica charantia OX=3673 GN=LOC111019441 PE=4 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 3.9e-58
Identity = 118/165 (71.52%), Postives = 131/165 (79.39%), Query Frame = 0


Query: 1   MAALETAG-VDLEEGGRGGDGGRGAEAGEVKVHSERDCRICHLGLESNSSECGTAIELGC 60
           +AA++T G  DLE+G     G R  EA      +ERDCRICHLGLES+S ECG  IELGC
Sbjct: 18  IAAVDTPGSADLEQGRCSSGGERRREA------AERDCRICHLGLESSSDECGIGIELGC 77

Query: 61  SCKNDLAAAHKHCAEAWFKIRGNKTCEICHSIVQNV-GVHELEQMEQLHEFNNGTLSTTT 120
           SCKNDL AAHKHCAEAWFKIRGNKTCEICHS+V NV G HE+E +EQL E NN T+STTT
Sbjct: 78  SCKNDLGAAHKHCAEAWFKIRGNKTCEICHSVVSNVIGAHEVEPVEQLSESNNATVSTTT 137

Query: 121 VAASVAASPDGGRRFWQVHRVLNFLLACIVFAFVISWLFHFNMRS 164
           VA SV   P+GGR FWQVHRVLNFLLAC+VFAFVISWLFHFN+ S
Sbjct: 138 VATSVTGGPNGGRSFWQVHRVLNFLLACMVFAFVISWLFHFNVPS 176

[Close]

BLAST of Carg13254 vs. ExPASy TrEMBL
Match: A0A1S3B5A7 (uncharacterized protein LOC103486339 OS=Cucumis melo OX=3656 GN=LOC103486339 PE=4 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 1.2e-46
Identity = 99/140 (70.71%), Postives = 113/140 (80.71%), Query Frame = 0


Query: 28  EVKVHS---ERDCRICHLGLESNSSECGTAIELGCSCKNDLAAAHKHCAEAWFKIRGNKT 87
           E+KVHS   ERDCRICHLGLESNS E G  IELGCSCK+DLAAAHKHCAE WFKI+GNKT
Sbjct: 95  EIKVHSAKVERDCRICHLGLESNSQESGIPIELGCSCKDDLAAAHKHCAETWFKIKGNKT 154

Query: 88  CEICHSIVQNV-GVHELEQMEQLHEFNNGTLSTTTVAASVAASPDGGRRFWQVHRVLNFL 147
           CEICHSI +N+ G +E+E  EQ +E NN + STTTVAAS+ +S      FW+ HR LNFL
Sbjct: 155 CEICHSIARNILGPNEVELTEQSNESNNAS-STTTVAASIPSS--DSHSFWRGHRFLNFL 214

Query: 148 LACIVFAFVISWLFHFNMRS 164
           LAC+VFAFVISWLFHFN+ S
Sbjct: 215 LACMVFAFVISWLFHFNVPS 231

[Close]

BLAST of Carg13254 vs. ExPASy TrEMBL
Match: A0A0B0MSH9 (E3 ubiquitin-protein ligase MARCH2 OS=Gossypium arboreum OX=29729 GN=LOC108455880 PE=4 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 2.0e-46
Identity = 100/142 (70.42%), Postives = 111/142 (78.17%), Query Frame = 0


Query: 26  AGEVKVH---SERDCRICHLGLESNSSECGTAIELGCSCKNDLAAAHKHCAEAWFKIRGN 85
           A E+K+H    E+DCRICHLGLESNS E G  IELGCSCK+DLAAAHKHCAEAWFKIRGN
Sbjct: 86  ANELKLHLAKVEKDCRICHLGLESNSHESGAPIELGCSCKDDLAAAHKHCAEAWFKIRGN 145

Query: 86  KTCEICHSIVQN-VGVHELEQMEQLHEFNNGTLSTTTVAASVAASPDGGRRFWQVHRVLN 145
           KTCEICHSI +N VGV+E+E  EQ +E N+   ST T A S AAS    R FW  HR LN
Sbjct: 146 KTCEICHSIARNVVGVNEVESTEQPNETNS---STATTAVSGAASYTESRSFWHGHRFLN 205

Query: 146 FLLACIVFAFVISWLFHFNMRS 164
           FLLAC+VFAFVISWLFHFN+ S
Sbjct: 206 FLLACMVFAFVISWLFHFNVPS 224

[Close]

BLAST of Carg13254 vs. ExPASy TrEMBL
Match: A0A2P5YEN9 (RING-CH-type domain-containing protein OS=Gossypium barbadense OX=3634 GN=ES319_A09G171900v1 PE=4 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 2.0e-46
Identity = 100/142 (70.42%), Postives = 111/142 (78.17%), Query Frame = 0


Query: 26  AGEVKVH---SERDCRICHLGLESNSSECGTAIELGCSCKNDLAAAHKHCAEAWFKIRGN 85
           A E+K+H    E+DCRICHLGLESNS E G  IELGCSCK+DLAAAHKHCAEAWFKIRGN
Sbjct: 86  ANELKLHLAKVEKDCRICHLGLESNSHESGAPIELGCSCKDDLAAAHKHCAEAWFKIRGN 145

Query: 86  KTCEICHSIVQN-VGVHELEQMEQLHEFNNGTLSTTTVAASVAASPDGGRRFWQVHRVLN 145
           KTCEICHSI +N VGV+E+E  EQ +E N+   ST T A S AAS    R FW  HR LN
Sbjct: 146 KTCEICHSIARNVVGVNEVESTEQPNETNS---STATTAVSGAASYTESRSFWHGHRFLN 205

Query: 146 FLLACIVFAFVISWLFHFNMRS 164
           FLLAC+VFAFVISWLFHFN+ S
Sbjct: 206 FLLACMVFAFVISWLFHFNVPS 224

[Close]

BLAST of Carg13254 vs. ExPASy TrEMBL
Match: A0A5D2P4V3 (RING-CH-type domain-containing protein OS=Gossypium tomentosum OX=34277 GN=ES332_A09G190600v1 PE=4 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 2.0e-46
Identity = 100/142 (70.42%), Postives = 111/142 (78.17%), Query Frame = 0


Query: 26  AGEVKVH---SERDCRICHLGLESNSSECGTAIELGCSCKNDLAAAHKHCAEAWFKIRGN 85
           A E+K+H    E+DCRICHLGLESNS E G  IELGCSCK+DLAAAHKHCAEAWFKIRGN
Sbjct: 86  ANELKLHLAKVEKDCRICHLGLESNSHESGAPIELGCSCKDDLAAAHKHCAEAWFKIRGN 145

Query: 86  KTCEICHSIVQN-VGVHELEQMEQLHEFNNGTLSTTTVAASVAASPDGGRRFWQVHRVLN 145
           KTCEICHSI +N VGV+E+E  EQ +E N+   ST T A S AAS    R FW  HR LN
Sbjct: 146 KTCEICHSIARNIVGVNEVESTEQPNETNS---STATTAVSGAASYTESRSFWHGHRFLN 205

Query: 146 FLLACIVFAFVISWLFHFNMRS 164
           FLLAC+VFAFVISWLFHFN+ S
Sbjct: 206 FLLACMVFAFVISWLFHFNVPS 224

[Close]

BLAST of Carg13254 vs. TAIR 10
Match: AT5G05830.1 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 158.7 bits (400), Expect = 4.0e-39
Identity = 81/132 (61.36%), Postives = 94/132 (71.21%), Query Frame = 0


Query: 33  SERDCRICHLGLESNSSECGTAIELGCSCKNDLAAAHKHCAEAWFKIRGNKTCEICHSIV 92
           SERDCRICH+ L++ + E G  IELGCSCK DLAAAHKHCAE WFKI+GNK CE+C SI 
Sbjct: 75  SERDCRICHMSLDAANLESGVPIELGCSCKADLAAAHKHCAETWFKIKGNKICEVCGSIA 134

Query: 93  QN-VGVHELEQMEQLHEFNNGTLSTTTVAASVAASPDGGRRFWQVHRVLNFLLACIVFAF 152
            N VG  E+E  E  +E N   +   T+  S     + GR FWQ HR LNFLLAC+VFAF
Sbjct: 135 GNVVGSVEVESEESRNEANG--VENLTLRTSGPRLVE-GRSFWQGHRFLNFLLACMVFAF 194

Query: 153 VISWLFHFNMRS 164
           VISWLFHFN+ S
Sbjct: 195 VISWLFHFNVPS 203

[Close]

BLAST of Carg13254 vs. TAIR 10
Match: AT5G01070.2 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 146.0 bits (367), Expect = 2.7e-35
Identity = 71/138 (51.45%), Postives = 87/138 (63.04%), Query Frame = 0


Query: 26  AGEVKVHSERDCRICHLGLESNSSECGTAIELGCSCKNDLAAAHKHCAEAWFKIRGNKTC 85
           +G ++   E+DCRICHLGLES+  ECG  + LGCSCK+DL   HK CA+ WFKI+GNKTC
Sbjct: 67  SGSIRGSPEKDCRICHLGLESSRHECGDPMVLGCSCKDDLGYVHKQCADTWFKIKGNKTC 126

Query: 86  EICHSIVQNVGVHELEQMEQLHEFNNGTLSTTTVAASVAASPDGGRRFWQVHRVLNFLLA 145
           EIC SI QN    + E  +   E N   +        VA S    RR  + +R LNFLL 
Sbjct: 127 EICRSIAQNFFKVDNEIGQTTVETNVDDVEAGNTPTMVATSDSDDRRLCRGNRFLNFLLT 186

Query: 146 CIVFAFVISWLFHFNMRS 164
           C+V AFVISW FHFN+ S
Sbjct: 187 CMVCAFVISWFFHFNLPS 204

[Close]

BLAST of Carg13254 vs. TAIR 10
Match: AT2G37950.1 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 134.0 bits (336), Expect = 1.1e-31
Identity = 71/137 (51.82%), Postives = 90/137 (65.69%), Query Frame = 0


Query: 34  ERDCRICHLGLESNSSECGTAIELGCSCKNDLAAAHKHCAEAWFKIRGNKTCEICHSIVQ 93
           E+DCRICHLG+E++    G AIELGCSCK+DLA AH+ CAE WFKI+G+KTCEIC S+ +
Sbjct: 81  EKDCRICHLGVETSG---GGAIELGCSCKDDLAVAHRQCAETWFKIKGDKTCEICQSVAR 140

Query: 94  NV-GVHEL--EQMEQLHEFNNGTLSTTTVAASVAASPDGG----RRFWQVHRVLNFLLAC 153
           NV G +E+    ME+  E  NG           AA   GG       WQ  RV+N +LAC
Sbjct: 141 NVGGANEMVGSTMEE-RELRNG--------EETAAGEGGGATVVENRWQPQRVVNLVLAC 200

Query: 154 IVFAFVISWLFHFNMRS 164
           +VF F ISW+FHF++ S
Sbjct: 201 MVFGFFISWIFHFHVSS 205

[Close]

BLAST of Carg13254 vs. TAIR 10
Match: AT5G59000.1 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 102.8 bits (255), Expect = 2.6e-22
Identity = 72/198 (36.36%), Postives = 88/198 (44.44%), Query Frame = 0


Query: 9   VDLEEGG------RGGDGG-------RGAEAGEVKVHSERDCRICHLGLESNSSE----- 68
           VDLE GG      +   GG       R     + K    RDCRICHL LE+N        
Sbjct: 40  VDLESGGVPAPEKQLHSGGKKRRTRRRKRRKKKKKKKGGRDCRICHLPLETNKEAEDEDE 99

Query: 69  --------------------------CGTAIELGCSCKNDLAAAHKHCAEAWFKIRGNKT 128
                                      G  ++LGCSCK DL  AH  CAE WFKI+GN T
Sbjct: 100 EEEDDSDDDEDEEDEEEEEEEEEEEYYGLPLQLGCSCKGDLGVAHSKCAETWFKIKGNMT 159

Query: 129 CEICHSIVQNVGVHELEQMEQLHEFNNGTLST-TTVAASVAASPDGGRRFWQVHRVLNFL 162
           CEIC ++  NV   +             T ST +  AA  + +    R  W    V+NFL
Sbjct: 160 CEICGAMALNVAGEQSNP--------ESTASTHSQAAAGQSLTQTEPRGIWHGRPVMNFL 219

[Close]

BLAST of Carg13254 vs. TAIR 10
Match: AT5G01070.1 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 86.7 bits (213), Expect = 1.9e-17
Identity = 35/58 (60.34%), Postives = 44/58 (75.86%), Query Frame = 0


Query: 26  AGEVKVHSERDCRICHLGLESNSSECGTAIELGCSCKNDLAAAHKHCAEAWFKIRGNK 84
           +G ++   E+DCRICHLGLES+  ECG  + LGCSCK+DL   HK CA+ WFKI+GNK
Sbjct: 67  SGSIRGSPEKDCRICHLGLESSRHECGDPMVLGCSCKDDLGYVHKQCADTWFKIKGNK 124

The following BLAST results are available for this feature:

BLAST of Carg13254 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7027374.1	8.8e-89	100.00	hypothetical protein SDJN02_11386 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6595366.1	7.5e-88	99.39	hypothetical protein SDJN03_11919, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023517920.1	4.2e-83	96.95	uncharacterized protein LOC111781512 isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_038883458.1	6.0e-61	76.51	uncharacterized protein LOC120074413 [Benincasa hispida]	[more]
XP_022151515.1	8.1e-58	71.52	uncharacterized protein LOC111019441, partial [Momordica charantia]	[more]

BLAST of Carg13254 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg13254 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DBE4	3.9e-58	71.52	uncharacterized protein LOC111019441 OS=Momordica charantia OX=3673 GN=LOC111019...	[more]
A0A1S3B5A7	1.2e-46	70.71	uncharacterized protein LOC103486339 OS=Cucumis melo OX=3656 GN=LOC103486339 PE=...	[more]
A0A0B0MSH9	2.0e-46	70.42	E3 ubiquitin-protein ligase MARCH2 OS=Gossypium arboreum OX=29729 GN=LOC10845588...	[more]
A0A2P5YEN9	2.0e-46	70.42	RING-CH-type domain-containing protein OS=Gossypium barbadense OX=3634 GN=ES319_...	[more]
A0A5D2P4V3	2.0e-46	70.42	RING-CH-type domain-containing protein OS=Gossypium tomentosum OX=34277 GN=ES332...	[more]

BLAST of Carg13254 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G05830.1	4.0e-39	61.36	RING/FYVE/PHD zinc finger superfamily protein	[more]
AT5G01070.2	2.7e-35	51.45	RING/FYVE/PHD zinc finger superfamily protein	[more]
AT2G37950.1	1.1e-31	51.82	RING/FYVE/PHD zinc finger superfamily protein	[more]
AT5G59000.1	2.6e-22	36.36	RING/FYVE/PHD zinc finger superfamily protein	[more]
AT5G01070.1	1.9e-17	60.34	RING/FYVE/PHD zinc finger superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011016	Zinc finger, RING-CH-type	SMART	SM00744	ringv_2	coord: 36..89 e-value: 1.3E-14 score: 64.5
IPR011016	Zinc finger, RING-CH-type	PFAM	PF12906	RINGv	coord: 37..88 e-value: 2.5E-8 score: 33.9
IPR011016	Zinc finger, RING-CH-type	PROSITE	PS51292	ZF_RING_CH	coord: 29..95 score: 17.439644
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 21..96 e-value: 2.6E-14 score: 54.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..27
None	No IPR available	PANTHER	PTHR46214	ZINC FINGER, RING-CH-TYPE	coord: 28..162
None	No IPR available	PANTHER	PTHR46214:SF5	OS01G0850200 PROTEIN	coord: 28..162
None	No IPR available	CDD	cd16495	RING_CH-C4HC3_MARCH	coord: 37..89 e-value: 1.99805E-11 score: 54.2556
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 33..92

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg13254-RA	Carg13254-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0008270	zinc ion binding