Carg13241 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg13241
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionCopper ion transmembrane transporter
LocationCarg_Chr07: 5718780 .. 5719085 (+)
RNA-Seq ExpressionCarg13241
SyntenyCarg13241
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCCATTTCTCTTCCTTCTCTTCATCTTCGCCAGTGCTCTTCTCGATTCCGCCGCCGTCGCAGCCGAACCGCCGTCCGCTAGGAAGCTCGGGAACCACTGGAGTGCGGCGGCTGTTTCTTCGAGTCCGTCTGAAGCGCCGCAAAGTGAAATCAAAGTATTGGAGAATCGTGAGCATCATAAGTCGAGAGATATGTCTATTGCCGGTGGGGGTGTGATATTGGGCGGACTCGCTACCACTTTTTTTGTGGCCATTATTTGTTACATTAGAGCTACCAAACGACAGAACTCAGAGGTGAAGTGA

mRNA sequence

ATGGCTCCATTTCTCTTCCTTCTCTTCATCTTCGCCAGTGCTCTTCTCGATTCCGCCGCCGTCGCAGCCGAACCGCCGTCCGCTAGGAAGCTCGGGAACCACTGGAGTGCGGCGGCTGTTTCTTCGAGTCCGTCTGAAGCGCCGCAAAGTGAAATCAAAGTATTGGAGAATCGTGAGCATCATAAGTCGAGAGATATGTCTATTGCCGGTGGGGGTGTGATATTGGGCGGACTCGCTACCACTTTTTTTGTGGCCATTATTTGTTACATTAGAGCTACCAAACGACAGAACTCAGAGGTGAAGTGA

Coding sequence (CDS)

ATGGCTCCATTTCTCTTCCTTCTCTTCATCTTCGCCAGTGCTCTTCTCGATTCCGCCGCCGTCGCAGCCGAACCGCCGTCCGCTAGGAAGCTCGGGAACCACTGGAGTGCGGCGGCTGTTTCTTCGAGTCCGTCTGAAGCGCCGCAAAGTGAAATCAAAGTATTGGAGAATCGTGAGCATCATAAGTCGAGAGATATGTCTATTGCCGGTGGGGGTGTGATATTGGGCGGACTCGCTACCACTTTTTTTGTGGCCATTATTTGTTACATTAGAGCTACCAAACGACAGAACTCAGAGGTGAAGTGA

Protein sequence

MAPFLFLLFIFASALLDSAAVAAEPPSARKLGNHWSAAAVSSSPSEAPQSEIKVLENREHHKSRDMSIAGGGVILGGLATTFFVAIICYIRATKRQNSEVK
Homology
BLAST of Carg13241 vs. NCBI nr
Match: KAG6595353.1 (hypothetical protein SDJN03_11906, partial [Cucurbita argyrosperma subsp. sororia] >KAG7027361.1 hypothetical protein SDJN02_11373, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 192.6 bits (488), Expect = 1.7e-45
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0

Query: 1   MAPFLFLLFIFASALLDSAAVAAEPPSARKLGNHWSAAAVSSSPSEAPQSEIKVLENREH 60
           MAPFLFLLFIFASALLDSAAVAAEPPSARKLGNHWSAAAVSSSPSEAPQSEIKVLENREH
Sbjct: 1   MAPFLFLLFIFASALLDSAAVAAEPPSARKLGNHWSAAAVSSSPSEAPQSEIKVLENREH 60

Query: 61  HKSRDMSIAGGGVILGGLATTFFVAIICYIRATKRQNSEVK 102
           HKSRDMSIAGGGVILGGLATTFFVAIICYIRATKRQNSEVK
Sbjct: 61  HKSRDMSIAGGGVILGGLATTFFVAIICYIRATKRQNSEVK 101

BLAST of Carg13241 vs. NCBI nr
Match: KAG6603622.1 (hypothetical protein SDJN03_04231, partial [Cucurbita argyrosperma subsp. sororia] >KAG7033809.1 hypothetical protein SDJN02_03534, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 131.7 bits (330), Expect = 3.5e-27
Identity = 78/117 (66.67%), Postives = 84/117 (71.79%), Query Frame = 0

Query: 1   MAPFLFLLFIFASALLDSAAV-------AAEPPSARKLGNHWSAAAVSSSPSEAPQSEIK 60
           MAPFLFLLFIFA+ALL S AV       AAEPPS RKLG H S A V SSPSEAP+SE K
Sbjct: 23  MAPFLFLLFIFANALLGSVAVGAAPPPTAAEPPSGRKLGKHHSTAVVFSSPSEAPRSEKK 82

Query: 61  V-------------LENREHHKSRDMSIAGGGVILGGLATTFFVAIICYIRATKRQN 98
           V             LEN EHHKS D S+AGGGVILGGLATTF VAI+CYIRAT+RQ+
Sbjct: 83  VSTANDGGTGNEIELENHEHHKSIDKSVAGGGVILGGLATTFLVAIVCYIRATRRQS 139

BLAST of Carg13241 vs. NCBI nr
Match: XP_008448528.1 (PREDICTED: uncharacterized protein LOC103490675 [Cucumis melo] >KAA0045126.1 uncharacterized protein E6C27_scaffold30G001250 [Cucumis melo var. makuwa] >TYK23611.1 uncharacterized protein E5676_scaffold500G001230 [Cucumis melo var. makuwa])

HSP 1 Score: 121.3 bits (303), Expect = 4.7e-24
Identity = 73/121 (60.33%), Postives = 79/121 (65.29%), Query Frame = 0

Query: 3   PFLFLLFIFASALLDSAAVAAEP-------PSARKLGNHWSAAAVSSSPSEAPQSEIKV- 62
           PFLFLLFIFA+A   S A AA P       PS RKLG H S A   SSP EAP+SE+KV 
Sbjct: 6   PFLFLLFIFANAFFSSLAAAAAPPPTSAESPSLRKLGKHQSTAIAFSSPIEAPRSEMKVQ 65

Query: 63  ---------------LENREHHKSRDMSIAGGGVILGGLATTFFVAIICYIRATKRQNSE 101
                          L N +HHKSRD SIAGGGVILGGLATTF VAIICYIRAT+RQ SE
Sbjct: 66  GTSAASGGESGNAVQLGNHDHHKSRDKSIAGGGVILGGLATTFLVAIICYIRATRRQKSE 125

BLAST of Carg13241 vs. NCBI nr
Match: KGN54308.1 (hypothetical protein Csa_017945 [Cucumis sativus])

HSP 1 Score: 121.3 bits (303), Expect = 4.7e-24
Identity = 72/123 (58.54%), Postives = 81/123 (65.85%), Query Frame = 0

Query: 1   MAPFLFLLFIFASALLDSAAVAAEP-------PSARKLGNHWSAAAVSSSPSEAPQSEIK 60
           + PFLFLLFIFA+AL  S A AA P       PS RKLG H S A   SSP+EAP+S +K
Sbjct: 2   LPPFLFLLFIFANALFSSLAAAAAPPPTSAESPSVRKLGKHQSTAIAFSSPTEAPRSVMK 61

Query: 61  V----------------LENREHHKSRDMSIAGGGVILGGLATTFFVAIICYIRATKRQN 101
           V                L N +HHKSRD SIAGGGVILGGLATTF VA+ICYIRAT+RQ 
Sbjct: 62  VQGTSGASGGESGNAVELGNHDHHKSRDKSIAGGGVILGGLATTFLVAVICYIRATRRQK 121

BLAST of Carg13241 vs. NCBI nr
Match: XP_022151558.1 (uncharacterized protein LOC111019472 [Momordica charantia])

HSP 1 Score: 118.2 bits (295), Expect = 4.0e-23
Identity = 76/128 (59.38%), Postives = 84/128 (65.62%), Query Frame = 0

Query: 1   MAPFLFLLFIFASALLDSAAV--------------AAEPPSARKLGNHWSAAAVS--SSP 60
           MA FLF+LFIFA+A L+S  V               AE PSARKLG H SAAAVS  SSP
Sbjct: 1   MARFLFILFIFANAFLNSVVVVGAEFGAAPSPISTGAETPSARKLGKHRSAAAVSSGSSP 60

Query: 61  SEAPQSEIKVL-----------ENREHHKSRDMSIAGGGVILGGLATTFFVAIICYIRAT 102
           SEAP+SE+KV                +HK+ D SIAGGGVILGGLATTF VAIICYIRAT
Sbjct: 61  SEAPRSEMKVQATSAAATNGGDHQHHNHKASDKSIAGGGVILGGLATTFLVAIICYIRAT 120

BLAST of Carg13241 vs. ExPASy TrEMBL
Match: A0A5A7TSM2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold500G001230 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 2.3e-24
Identity = 73/121 (60.33%), Postives = 79/121 (65.29%), Query Frame = 0

Query: 3   PFLFLLFIFASALLDSAAVAAEP-------PSARKLGNHWSAAAVSSSPSEAPQSEIKV- 62
           PFLFLLFIFA+A   S A AA P       PS RKLG H S A   SSP EAP+SE+KV 
Sbjct: 6   PFLFLLFIFANAFFSSLAAAAAPPPTSAESPSLRKLGKHQSTAIAFSSPIEAPRSEMKVQ 65

Query: 63  ---------------LENREHHKSRDMSIAGGGVILGGLATTFFVAIICYIRATKRQNSE 101
                          L N +HHKSRD SIAGGGVILGGLATTF VAIICYIRAT+RQ SE
Sbjct: 66  GTSAASGGESGNAVQLGNHDHHKSRDKSIAGGGVILGGLATTFLVAIICYIRATRRQKSE 125

BLAST of Carg13241 vs. ExPASy TrEMBL
Match: A0A0A0KXQ0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G303070 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 2.3e-24
Identity = 72/123 (58.54%), Postives = 81/123 (65.85%), Query Frame = 0

Query: 1   MAPFLFLLFIFASALLDSAAVAAEP-------PSARKLGNHWSAAAVSSSPSEAPQSEIK 60
           + PFLFLLFIFA+AL  S A AA P       PS RKLG H S A   SSP+EAP+S +K
Sbjct: 2   LPPFLFLLFIFANALFSSLAAAAAPPPTSAESPSVRKLGKHQSTAIAFSSPTEAPRSVMK 61

Query: 61  V----------------LENREHHKSRDMSIAGGGVILGGLATTFFVAIICYIRATKRQN 101
           V                L N +HHKSRD SIAGGGVILGGLATTF VA+ICYIRAT+RQ 
Sbjct: 62  VQGTSGASGGESGNAVELGNHDHHKSRDKSIAGGGVILGGLATTFLVAVICYIRATRRQK 121

BLAST of Carg13241 vs. ExPASy TrEMBL
Match: A0A1S3BJV8 (uncharacterized protein LOC103490675 OS=Cucumis melo OX=3656 GN=LOC103490675 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 2.3e-24
Identity = 73/121 (60.33%), Postives = 79/121 (65.29%), Query Frame = 0

Query: 3   PFLFLLFIFASALLDSAAVAAEP-------PSARKLGNHWSAAAVSSSPSEAPQSEIKV- 62
           PFLFLLFIFA+A   S A AA P       PS RKLG H S A   SSP EAP+SE+KV 
Sbjct: 6   PFLFLLFIFANAFFSSLAAAAAPPPTSAESPSLRKLGKHQSTAIAFSSPIEAPRSEMKVQ 65

Query: 63  ---------------LENREHHKSRDMSIAGGGVILGGLATTFFVAIICYIRATKRQNSE 101
                          L N +HHKSRD SIAGGGVILGGLATTF VAIICYIRAT+RQ SE
Sbjct: 66  GTSAASGGESGNAVQLGNHDHHKSRDKSIAGGGVILGGLATTFLVAIICYIRATRRQKSE 125

BLAST of Carg13241 vs. ExPASy TrEMBL
Match: A0A6J1DCH7 (uncharacterized protein LOC111019472 OS=Momordica charantia OX=3673 GN=LOC111019472 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.9e-23
Identity = 76/128 (59.38%), Postives = 84/128 (65.62%), Query Frame = 0

Query: 1   MAPFLFLLFIFASALLDSAAV--------------AAEPPSARKLGNHWSAAAVS--SSP 60
           MA FLF+LFIFA+A L+S  V               AE PSARKLG H SAAAVS  SSP
Sbjct: 1   MARFLFILFIFANAFLNSVVVVGAEFGAAPSPISTGAETPSARKLGKHRSAAAVSSGSSP 60

Query: 61  SEAPQSEIKVL-----------ENREHHKSRDMSIAGGGVILGGLATTFFVAIICYIRAT 102
           SEAP+SE+KV                +HK+ D SIAGGGVILGGLATTF VAIICYIRAT
Sbjct: 61  SEAPRSEMKVQATSAAATNGGDHQHHNHKASDKSIAGGGVILGGLATTFLVAIICYIRAT 120

BLAST of Carg13241 vs. ExPASy TrEMBL
Match: A0A7J7CSV7 (Uncharacterized protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW13G00073 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 3.4e-12
Identity = 47/87 (54.02%), Postives = 55/87 (63.22%), Query Frame = 0

Query: 23  AEPPSARKLGNHWSAA------AVSSSPSEAPQSEIKVLEN----REHHKSRDMSIAGGG 82
           +EPP  RKLG H            S SPS+APQ+E  +L +    R  H S D SIAGGG
Sbjct: 12  SEPPVIRKLGKHQPQVPNSFIEPPSLSPSQAPQAEETILTSSLLRRMRHHSIDKSIAGGG 71

Query: 83  VILGGLATTFFVAIICYIRATKRQNSE 100
           VILGGL TTFFVA+ CYIRAT+R  +E
Sbjct: 72  VILGGLGTTFFVAVFCYIRATRRPKAE 98

BLAST of Carg13241 vs. TAIR 10
Match: AT3G09280.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: root; Has 31 Blast hits to 31 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 69.3 bits (168), Expect = 2.0e-12
Identity = 39/89 (43.82%), Postives = 55/89 (61.80%), Query Frame = 0

Query: 7  LLFIFASALLDSAAVAAEPPSARKLGNHWSAAAVSSSPSEAPQSEIKVLENREHHKSRDM 66
          L ++F+ A   +A+  AEPP+ RKLG H      + +P  +   E   +    HH + + 
Sbjct: 12 LTYVFSMA---AASSEAEPPATRKLGRHEWPGEEAEAPEVSHLEE--TVRRGHHHSTVER 71

Query: 67 SIAGGGVILGGLATTFFVAIICYIRATKR 96
          S+AGGGVILGGLATTF V + CYIRAT++
Sbjct: 72 SVAGGGVILGGLATTFLVVVFCYIRATRK 95

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6595353.11.7e-45100.00hypothetical protein SDJN03_11906, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6603622.13.5e-2766.67hypothetical protein SDJN03_04231, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_008448528.14.7e-2460.33PREDICTED: uncharacterized protein LOC103490675 [Cucumis melo] >KAA0045126.1 unc... [more]
KGN54308.14.7e-2458.54hypothetical protein Csa_017945 [Cucumis sativus][more]
XP_022151558.14.0e-2359.38uncharacterized protein LOC111019472 [Momordica charantia][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7TSM22.3e-2460.33Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0KXQ02.3e-2458.54Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G303070 PE=4 SV=1[more]
A0A1S3BJV82.3e-2460.33uncharacterized protein LOC103490675 OS=Cucumis melo OX=3656 GN=LOC103490675 PE=... [more]
A0A6J1DCH71.9e-2359.38uncharacterized protein LOC111019472 OS=Momordica charantia OX=3673 GN=LOC111019... [more]
A0A7J7CSV73.4e-1254.02Uncharacterized protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW13G00073 ... [more]
Match NameE-valueIdentityDescription
AT3G09280.12.0e-1243.82unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34558EXPRESSED PROTEINcoord: 1..99
NoneNo IPR availablePANTHERPTHR34558:SF9F3L24.15 PROTEINcoord: 1..99

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg13241-RACarg13241-RAmRNA