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Carg13241 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCTCCATTTCTCTTCCTTCTCTTCATCTTCGCCAGTGCTCTTCTCGATTCCGCCGCCGTCGCAGCCGAACCGCCGTCCGCTAGGAAGCTCGGGAACCACTGGAGTGCGGCGGCTGTTTCTTCGAGTCCGTCTGAAGCGCCGCAAAGTGAAATCAAAGTATTGGAGAATCGTGAGCATCATAAGTCGAGAGATATGTCTATTGCCGGTGGGGGTGTGATATTGGGCGGACTCGCTACCACTTTTTTTGTGGCCATTATTTGTTACATTAGAGCTACCAAACGACAGAACTCAGAGGTGAAGTGA ATGGCTCCATTTCTCTTCCTTCTCTTCATCTTCGCCAGTGCTCTTCTCGATTCCGCCGCCGTCGCAGCCGAACCGCCGTCCGCTAGGAAGCTCGGGAACCACTGGAGTGCGGCGGCTGTTTCTTCGAGTCCGTCTGAAGCGCCGCAAAGTGAAATCAAAGTATTGGAGAATCGTGAGCATCATAAGTCGAGAGATATGTCTATTGCCGGTGGGGGTGTGATATTGGGCGGACTCGCTACCACTTTTTTTGTGGCCATTATTTGTTACATTAGAGCTACCAAACGACAGAACTCAGAGGTGAAGTGA ATGGCTCCATTTCTCTTCCTTCTCTTCATCTTCGCCAGTGCTCTTCTCGATTCCGCCGCCGTCGCAGCCGAACCGCCGTCCGCTAGGAAGCTCGGGAACCACTGGAGTGCGGCGGCTGTTTCTTCGAGTCCGTCTGAAGCGCCGCAAAGTGAAATCAAAGTATTGGAGAATCGTGAGCATCATAAGTCGAGAGATATGTCTATTGCCGGTGGGGGTGTGATATTGGGCGGACTCGCTACCACTTTTTTTGTGGCCATTATTTGTTACATTAGAGCTACCAAACGACAGAACTCAGAGGTGAAGTGA MAPFLFLLFIFASALLDSAAVAAEPPSARKLGNHWSAAAVSSSPSEAPQSEIKVLENREHHKSRDMSIAGGGVILGGLATTFFVAIICYIRATKRQNSEVK Homology
BLAST of Carg13241 vs. NCBI nr
Match: KAG6595353.1 (hypothetical protein SDJN03_11906, partial [Cucurbita argyrosperma subsp. sororia] >KAG7027361.1 hypothetical protein SDJN02_11373, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 192.6 bits (488), Expect = 1.7e-45 Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0
BLAST of Carg13241 vs. NCBI nr
Match: KAG6603622.1 (hypothetical protein SDJN03_04231, partial [Cucurbita argyrosperma subsp. sororia] >KAG7033809.1 hypothetical protein SDJN02_03534, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 131.7 bits (330), Expect = 3.5e-27 Identity = 78/117 (66.67%), Postives = 84/117 (71.79%), Query Frame = 0
BLAST of Carg13241 vs. NCBI nr
Match: XP_008448528.1 (PREDICTED: uncharacterized protein LOC103490675 [Cucumis melo] >KAA0045126.1 uncharacterized protein E6C27_scaffold30G001250 [Cucumis melo var. makuwa] >TYK23611.1 uncharacterized protein E5676_scaffold500G001230 [Cucumis melo var. makuwa]) HSP 1 Score: 121.3 bits (303), Expect = 4.7e-24 Identity = 73/121 (60.33%), Postives = 79/121 (65.29%), Query Frame = 0
BLAST of Carg13241 vs. NCBI nr
Match: KGN54308.1 (hypothetical protein Csa_017945 [Cucumis sativus]) HSP 1 Score: 121.3 bits (303), Expect = 4.7e-24 Identity = 72/123 (58.54%), Postives = 81/123 (65.85%), Query Frame = 0
BLAST of Carg13241 vs. NCBI nr
Match: XP_022151558.1 (uncharacterized protein LOC111019472 [Momordica charantia]) HSP 1 Score: 118.2 bits (295), Expect = 4.0e-23 Identity = 76/128 (59.38%), Postives = 84/128 (65.62%), Query Frame = 0
BLAST of Carg13241 vs. ExPASy TrEMBL
Match: A0A5A7TSM2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold500G001230 PE=4 SV=1) HSP 1 Score: 121.3 bits (303), Expect = 2.3e-24 Identity = 73/121 (60.33%), Postives = 79/121 (65.29%), Query Frame = 0
BLAST of Carg13241 vs. ExPASy TrEMBL
Match: A0A0A0KXQ0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G303070 PE=4 SV=1) HSP 1 Score: 121.3 bits (303), Expect = 2.3e-24 Identity = 72/123 (58.54%), Postives = 81/123 (65.85%), Query Frame = 0
BLAST of Carg13241 vs. ExPASy TrEMBL
Match: A0A1S3BJV8 (uncharacterized protein LOC103490675 OS=Cucumis melo OX=3656 GN=LOC103490675 PE=4 SV=1) HSP 1 Score: 121.3 bits (303), Expect = 2.3e-24 Identity = 73/121 (60.33%), Postives = 79/121 (65.29%), Query Frame = 0
BLAST of Carg13241 vs. ExPASy TrEMBL
Match: A0A6J1DCH7 (uncharacterized protein LOC111019472 OS=Momordica charantia OX=3673 GN=LOC111019472 PE=4 SV=1) HSP 1 Score: 118.2 bits (295), Expect = 1.9e-23 Identity = 76/128 (59.38%), Postives = 84/128 (65.62%), Query Frame = 0
BLAST of Carg13241 vs. ExPASy TrEMBL
Match: A0A7J7CSV7 (Uncharacterized protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW13G00073 PE=4 SV=1) HSP 1 Score: 80.9 bits (198), Expect = 3.4e-12 Identity = 47/87 (54.02%), Postives = 55/87 (63.22%), Query Frame = 0
BLAST of Carg13241 vs. TAIR 10
Match: AT3G09280.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: root; Has 31 Blast hits to 31 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 69.3 bits (168), Expect = 2.0e-12 Identity = 39/89 (43.82%), Postives = 55/89 (61.80%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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