Carg13204 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg13204
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Ferredoxin
Location	Carg_Chr04: 2848529 .. 2848987 (+)
RNA-Seq Expression	Carg13204
Synteny	Carg13204

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCAGCACCACCGCACTCACCGCCCCAATTCCGGTCACCTCCTTCCTCCGGCGGCAGCAGCCGGTGACCGGGGTAAGCCTGAGGCCATTTCCCAACGTGGGTCAGTCTCTGTTTGGGCTGAAACTCGGCAGCAGCCGCGGTGGAAGCATGACAGTGATGGCATACAAGGTGAAGCTGATTACACCAGAGGGAGAGAAAGAGATTGAATGCAGCGGCGATGATTACATTCTTGATGCGGCGGAGGAAAGCGGCGTTGATCTGCCGTACTCTTGCAGAGCAGGGGCGTGTTCTTCGTGCATTGGGAAGCTGAAATCAGGGAAGGTGGATCAATCTGATAACAGCTTTCTTGATGATCAACAAATGGAAGATGGGTGGGTTCTGACTTGTGTTGCAAGGCCTGAATCTGATATTGTAATTGAGACCCACAAGGAGGAGGTCTTTGCTGATTCTGCCTAA

mRNA sequence

ATGGGCAGCACCACCGCACTCACCGCCCCAATTCCGGTCACCTCCTTCCTCCGGCGGCAGCAGCCGGTGACCGGGGTAAGCCTGAGGCCATTTCCCAACGTGGGTCAGTCTCTGTTTGGGCTGAAACTCGGCAGCAGCCGCGGTGGAAGCATGACAGTGATGGCATACAAGGTGAAGCTGATTACACCAGAGGGAGAGAAAGAGATTGAATGCAGCGGCGATGATTACATTCTTGATGCGGCGGAGGAAAGCGGCGTTGATCTGCCGTACTCTTGCAGAGCAGGGGCGTGTTCTTCGTGCATTGGGAAGCTGAAATCAGGGAAGGTGGATCAATCTGATAACAGCTTTCTTGATGATCAACAAATGGAAGATGGGTGGGTTCTGACTTGTGTTGCAAGGCCTGAATCTGATATTGTAATTGAGACCCACAAGGAGGAGGTCTTTGCTGATTCTGCCTAA

Coding sequence (CDS)

ATGGGCAGCACCACCGCACTCACCGCCCCAATTCCGGTCACCTCCTTCCTCCGGCGGCAGCAGCCGGTGACCGGGGTAAGCCTGAGGCCATTTCCCAACGTGGGTCAGTCTCTGTTTGGGCTGAAACTCGGCAGCAGCCGCGGTGGAAGCATGACAGTGATGGCATACAAGGTGAAGCTGATTACACCAGAGGGAGAGAAAGAGATTGAATGCAGCGGCGATGATTACATTCTTGATGCGGCGGAGGAAAGCGGCGTTGATCTGCCGTACTCTTGCAGAGCAGGGGCGTGTTCTTCGTGCATTGGGAAGCTGAAATCAGGGAAGGTGGATCAATCTGATAACAGCTTTCTTGATGATCAACAAATGGAAGATGGGTGGGTTCTGACTTGTGTTGCAAGGCCTGAATCTGATATTGTAATTGAGACCCACAAGGAGGAGGTCTTTGCTGATTCTGCCTAA

Protein sequence

MGSTTALTAPIPVTSFLRRQQPVTGVSLRPFPNVGQSLFGLKLGSSRGGSMTVMAYKVKLITPEGEKEIECSGDDYILDAAEESGVDLPYSCRAGACSSCIGKLKSGKVDQSDNSFLDDQQMEDGWVLTCVARPESDIVIETHKEEVFADSA

Homology

[Close]

BLAST of Carg13204 vs. NCBI nr
Match: XP_022941964.1 (ferredoxin-like [Cucurbita moschata] >XP_022983176.1 ferredoxin-like [Cucurbita maxima] >XP_023547581.1 ferredoxin-like [Cucurbita pepo subsp. pepo] >KAG6600367.1 Ferredoxin-2, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7031026.1 Ferredoxin-2, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 306.2 bits (783), Expect = 1.6e-79
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0


Query: 1   MGSTTALTAPIPVTSFLRRQQPVTGVSLRPFPNVGQSLFGLKLGSSRGGSMTVMAYKVKL 60
           MGSTTALTAPIPVTSFLRRQQPVTGVSLRPFPNVGQSLFGLKLGSSRGGSMTVMAYKVKL
Sbjct: 1   MGSTTALTAPIPVTSFLRRQQPVTGVSLRPFPNVGQSLFGLKLGSSRGGSMTVMAYKVKL 60

Query: 61  ITPEGEKEIECSGDDYILDAAEESGVDLPYSCRAGACSSCIGKLKSGKVDQSDNSFLDDQ 120
           ITPEGEKEIECSGDDYILDAAEESGVDLPYSCRAGACSSCIGKLKSGKVDQSDNSFLDDQ
Sbjct: 61  ITPEGEKEIECSGDDYILDAAEESGVDLPYSCRAGACSSCIGKLKSGKVDQSDNSFLDDQ 120

Query: 121 QMEDGWVLTCVARPESDIVIETHKEEVFADSA 153
           QMEDGWVLTCVARPESDIVIETHKEEVFADSA
Sbjct: 121 QMEDGWVLTCVARPESDIVIETHKEEVFADSA 152

[Close]

BLAST of Carg13204 vs. NCBI nr
Match: XP_038905955.1 (ferredoxin-like [Benincasa hispida])

HSP 1 Score: 238.4 bits (607), Expect = 4.0e-59
Identity = 116/149 (77.85%), Postives = 127/149 (85.23%), Query Frame = 0


Query: 1   MGSTTALTAPIPVTSFLRRQQPVTGVSLRPFPNVGQSLFGLKLGSSRGGSMTVMAYKVKL 60
           MGSTTA TAP P  SFLRR  P  GVSL+PFPNVGQSLFGLK GSSRGG +T MAY + L
Sbjct: 1   MGSTTAFTAPFPAASFLRR-NPAGGVSLKPFPNVGQSLFGLKHGSSRGGRVTAMAYNITL 60

Query: 61  ITPEGEKEIECSGDDYILDAAEESGVDLPYSCRAGACSSCIGKLKSGKVDQSDNSFLDDQ 120
           ITPEGEK I C+ D YILDAAEE+G+DLPYSCRAGACSSC+GK+ SG +DQSDNSFLDD 
Sbjct: 61  ITPEGEKSITCTSDVYILDAAEEAGLDLPYSCRAGACSSCVGKVVSGTLDQSDNSFLDDD 120

Query: 121 QMEDGWVLTCVARPESDIVIETHKEEVFA 150
           QM  GWVLTCVARPESD+VIETHKE+VFA
Sbjct: 121 QMAQGWVLTCVARPESDLVIETHKEDVFA 148

[Close]

BLAST of Carg13204 vs. NCBI nr
Match: XP_008456052.1 (PREDICTED: ferredoxin-like [Cucumis melo] >KAA0038971.1 ferredoxin-like [Cucumis melo var. makuwa] >TYK11176.1 ferredoxin-like [Cucumis melo var. makuwa])

HSP 1 Score: 226.5 bits (576), Expect = 1.6e-55
Identity = 112/149 (75.17%), Postives = 125/149 (83.89%), Query Frame = 0


Query: 1   MGSTTALTAPIPVTSFLRRQQPVTGVSLRPFPNVGQSLFGLKLGSSRGGSMTVMAYKVKL 60
           MGSTTA T+P P TSFLRR  P  GVSL+PFPN+G+SLFGLK    RGG +T MAY VKL
Sbjct: 1   MGSTTAFTSPFPATSFLRR-NPTGGVSLKPFPNMGESLFGLK---HRGGRVTAMAYNVKL 60

Query: 61  ITPEGEKEIECSGDDYILDAAEESGVDLPYSCRAGACSSCIGKLKSGKVDQSDNSFLDDQ 120
           ITPEGEK I C  D YILDAAEE+G+DLPYSCRAGACSSCIGK+ SGK+DQSD SFLDD 
Sbjct: 61  ITPEGEKSITCPDDAYILDAAEENGIDLPYSCRAGACSSCIGKVVSGKLDQSDQSFLDDD 120

Query: 121 QMEDGWVLTCVARPESDIVIETHKEEVFA 150
           Q+ +GWVLTCVAR ESD+VIETHKE+VFA
Sbjct: 121 QVAEGWVLTCVARAESDVVIETHKEDVFA 145

[Close]

BLAST of Carg13204 vs. NCBI nr
Match: XP_004146259.1 (ferredoxin, leaf L-A [Cucumis sativus] >KGN57598.1 hypothetical protein Csa_011051 [Cucumis sativus])

HSP 1 Score: 221.5 bits (563), Expect = 5.0e-54
Identity = 106/149 (71.14%), Postives = 126/149 (84.56%), Query Frame = 0


Query: 1   MGSTTALTAPIPVTSFLRRQQPVTGVSLRPFPNVGQSLFGLKLGSSRGGSMTVMAYKVKL 60
           M STTA+T+P P TSF+RR  P  GVS +PFPN+G+SL+GLK    RGG + + AYKVKL
Sbjct: 1   MSSTTAITSPFPATSFIRR-NPTGGVSFKPFPNMGESLYGLK---HRGGRLAMKAYKVKL 60

Query: 61  ITPEGEKEIECSGDDYILDAAEESGVDLPYSCRAGACSSCIGKLKSGKVDQSDNSFLDDQ 120
           ITP+GEK +EC  D YILDAAEESG+DLPYSCRAGACSSC+GK+ SGK+DQSD SFLDD+
Sbjct: 61  ITPDGEKTVECDADLYILDAAEESGLDLPYSCRAGACSSCVGKVVSGKLDQSDQSFLDDE 120

Query: 121 QMEDGWVLTCVARPESDIVIETHKEEVFA 150
           Q+ +GWVLTCVARPESD+VIETHKE+ FA
Sbjct: 121 QVAEGWVLTCVARPESDLVIETHKEDSFA 145

[Close]

BLAST of Carg13204 vs. NCBI nr
Match: XP_022136604.1 (ferredoxin-like [Momordica charantia])

HSP 1 Score: 218.0 bits (554), Expect = 5.6e-53
Identity = 109/149 (73.15%), Postives = 122/149 (81.88%), Query Frame = 0


Query: 1   MGSTTALTAPIPVTSFLRRQQPVTGVSLRPFPNVGQSLFGLKLGSSRGGSMTVMAYKVKL 60
           MGSTTAL+ PIP TSFL R QP  G  LRPFPN+GQ +FGLK G SRGG +  MAYKV L
Sbjct: 1   MGSTTALSGPIPATSFL-RGQPAAG--LRPFPNMGQGVFGLK-GGSRGGRVRAMAYKVTL 60

Query: 61  ITPEGEKEIECSGDDYILDAAEESGVDLPYSCRAGACSSCIGKLKSGKVDQSDNSFLDDQ 120
           ITP GEK ++C  D YILDAAEE G+DLPYSCRAGACSSC+GK+ SGKVDQSDNSFLDD 
Sbjct: 61  ITPSGEKSVKCPPDSYILDAAEEDGLDLPYSCRAGACSSCVGKVVSGKVDQSDNSFLDDD 120

Query: 121 QMEDGWVLTCVARPESDIVIETHKEEVFA 150
           QM +GWVLTCVA P+SD+VIETHKE  F+
Sbjct: 121 QMAEGWVLTCVAYPQSDVVIETHKEGEFS 145

[Close]

BLAST of Carg13204 vs. ExPASy Swiss-Prot
Match: O04090 (Ferredoxin-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=FD1 PE=1 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 4.3e-48
Identity = 100/147 (68.03%), Postives = 120/147 (81.63%), Query Frame = 0


Query: 3   STTALTAPIPVTSFLRRQQPVTGVSLR--PFPNVGQSLFGLKLGSSRGGSMTVMA-YKVK 62
           ++TAL++ I  TSFLRRQQ  T +SLR  PF N  QSLFGLK  ++RGG +T MA YKVK
Sbjct: 2   ASTALSSAIVSTSFLRRQQ--TPISLRSLPFANT-QSLFGLKSSTARGGRVTAMATYKVK 61

Query: 63  LITPEGEKEIECSGDDYILDAAEESGVDLPYSCRAGACSSCIGKLKSGKVDQSDNSFLDD 122
            ITPEGE+E+EC  D Y+LDAAEE+G+DLPYSCRAG+CSSC GK+ SG +DQSD SFLDD
Sbjct: 62  FITPEGEQEVECEEDVYVLDAAEEAGLDLPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDD 121

Query: 123 QQMEDGWVLTCVARPESDIVIETHKEE 147
           +QM +G+VLTCVA P SD+VIETHKEE
Sbjct: 122 EQMSEGYVLTCVAYPTSDVVIETHKEE 145

[Close]

BLAST of Carg13204 vs. ExPASy Swiss-Prot
Match: P16972 (Ferredoxin-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=FD2 PE=1 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 4.4e-45
Identity = 93/146 (63.70%), Postives = 114/146 (78.08%), Query Frame = 0


Query: 3   STTALTAPIPVTSFLRRQQPVTGVSLRPFPNVG-QSLFGLKLGSSRGGSMTVMA-YKVKL 62
           ++TAL++ I  TSF+RR      +SLR  P+   QSLFGLK G++RGG +T MA YKVK 
Sbjct: 2   ASTALSSAIVGTSFIRRSP--APISLRSLPSANTQSLFGLKSGTARGGRVTAMATYKVKF 61

Query: 63  ITPEGEKEIECSGDDYILDAAEESGVDLPYSCRAGACSSCIGKLKSGKVDQSDNSFLDDQ 122
           ITPEGE E+EC  D Y+LDAAEE+G+DLPYSCRAG+CSSC GK+ SG VDQSD SFLDD+
Sbjct: 62  ITPEGELEVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQSFLDDE 121

Query: 123 QMEDGWVLTCVARPESDIVIETHKEE 147
           Q+ +G+VLTC A P SD+ IETHKEE
Sbjct: 122 QIGEGFVLTCAAYPTSDVTIETHKEE 145

[Close]

BLAST of Carg13204 vs. ExPASy Swiss-Prot
Match: Q9ZTS2 (Ferredoxin, chloroplastic OS=Capsicum annuum OX=4072 GN=AP1 PE=1 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 1.6e-42
Identity = 87/141 (61.70%), Postives = 110/141 (78.01%), Query Frame = 0


Query: 6   ALTAPIPVTSFLRRQQPVTGVSLRPFPNVGQSLFGLKLGSSRGGSMTVMA-YKVKLITPE 65
           +++A +  TSF+ R+  VT  SL+P PNVG++LFGLK  S+ GG +T MA YKVKLITP+
Sbjct: 3   SVSATMISTSFMPRKPAVT--SLKPIPNVGEALFGLK--SANGGKVTCMASYKVKLITPD 62

Query: 66  GEKEIECSGDDYILDAAEESGVDLPYSCRAGACSSCIGKLKSGKVDQSDNSFLDDQQMED 125
           G  E +C  + YILD AEE+G DLPYSCRAG+CSSC GK+  G VDQ+D +FLDD Q+E+
Sbjct: 63  GPIEFDCPDNVYILDQAEEAGHDLPYSCRAGSCSSCAGKIAGGAVDQTDGNFLDDDQLEE 122

Query: 126 GWVLTCVARPESDIVIETHKE 146
           GWVLTCVA P+SD+ IETHKE
Sbjct: 123 GWVLTCVAYPQSDVTIETHKE 139

[Close]

BLAST of Carg13204 vs. ExPASy Swiss-Prot
Match: O04683 (Ferredoxin-1, chloroplastic OS=Mesembryanthemum crystallinum OX=3544 PE=2 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 1.7e-41
Identity = 83/144 (57.64%), Postives = 105/144 (72.92%), Query Frame = 0


Query: 3   STTALTAPIPVTSFLRRQQPVTGVSLRPFPNVGQSLFGLKLGSSRGGSMTVMAYKVKLIT 62
           +T AL+     T+F  +  P+T        NVG++LFGLK  +SRG    + AYKV L+T
Sbjct: 4   TTAALSGATMSTAFAPKTPPMTAALP---TNVGRALFGLKSSASRGRVTAMAAYKVTLVT 63

Query: 63  PEGEKEIECSGDDYILDAAEESGVDLPYSCRAGACSSCIGKLKSGKVDQSDNSFLDDQQM 122
           PEG++E+EC  D YILDAAEE+G+DLPYSCRAG+CSSC GK+ SG V+Q D SFLDD Q+
Sbjct: 64  PEGKQELECPDDVYILDAAEEAGIDLPYSCRAGSCSSCAGKVTSGSVNQDDGSFLDDDQI 123

Query: 123 EDGWVLTCVARPESDIVIETHKEE 147
           ++GWVLTCVA P  D+ IETHKEE
Sbjct: 124 KEGWVLTCVAYPTGDVTIETHKEE 144

[Close]

BLAST of Carg13204 vs. ExPASy Swiss-Prot
Match: P00221 (Ferredoxin-1, chloroplastic OS=Spinacia oleracea OX=3562 GN=PETF PE=1 SV=2)

HSP 1 Score: 167.5 bits (423), Expect = 1.1e-40
Identity = 84/144 (58.33%), Postives = 103/144 (71.53%), Query Frame = 0


Query: 3   STTALTAPIPVTSFLRRQQPVTGVSLRPFPNVGQSLFGLKLGSSRGGSMTVMAYKVKLIT 62
           + T  T     T+F+ + Q    ++  P  N G+SLFGLK G SRGG MT+ AYKV L+T
Sbjct: 2   AATTTTMMGMATTFVPKPQAPPMMAALP-SNTGRSLFGLKTG-SRGGRMTMAAYKVTLVT 61

Query: 63  PEGEKEIECSGDDYILDAAEESGVDLPYSCRAGACSSCIGKLKSGKVDQSDNSFLDDQQM 122
           P G  E +C  D YILDAAEE G+DLPYSCRAG+CSSC GKLK+G ++Q D SFLDD Q+
Sbjct: 62  PTGNVEFQCPDDVYILDAAEEEGIDLPYSCRAGSCSSCAGKLKTGSLNQDDQSFLDDDQI 121

Query: 123 EDGWVLTCVARPESDIVIETHKEE 147
           ++GWVLTC A P SD+ IETHKEE
Sbjct: 122 DEGWVLTCAAYPVSDVTIETHKEE 143

[Close]

BLAST of Carg13204 vs. ExPASy TrEMBL
Match: A0A6J1J1D5 (Ferredoxin OS=Cucurbita maxima OX=3661 GN=LOC111481826 PE=3 SV=1)

HSP 1 Score: 306.2 bits (783), Expect = 7.5e-80
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0


Query: 1   MGSTTALTAPIPVTSFLRRQQPVTGVSLRPFPNVGQSLFGLKLGSSRGGSMTVMAYKVKL 60
           MGSTTALTAPIPVTSFLRRQQPVTGVSLRPFPNVGQSLFGLKLGSSRGGSMTVMAYKVKL
Sbjct: 1   MGSTTALTAPIPVTSFLRRQQPVTGVSLRPFPNVGQSLFGLKLGSSRGGSMTVMAYKVKL 60

Query: 61  ITPEGEKEIECSGDDYILDAAEESGVDLPYSCRAGACSSCIGKLKSGKVDQSDNSFLDDQ 120
           ITPEGEKEIECSGDDYILDAAEESGVDLPYSCRAGACSSCIGKLKSGKVDQSDNSFLDDQ
Sbjct: 61  ITPEGEKEIECSGDDYILDAAEESGVDLPYSCRAGACSSCIGKLKSGKVDQSDNSFLDDQ 120

Query: 121 QMEDGWVLTCVARPESDIVIETHKEEVFADSA 153
           QMEDGWVLTCVARPESDIVIETHKEEVFADSA
Sbjct: 121 QMEDGWVLTCVARPESDIVIETHKEEVFADSA 152

[Close]

BLAST of Carg13204 vs. ExPASy TrEMBL
Match: A0A6J1FPZ2 (Ferredoxin OS=Cucurbita moschata OX=3662 GN=LOC111447172 PE=3 SV=1)

HSP 1 Score: 306.2 bits (783), Expect = 7.5e-80
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0


Query: 1   MGSTTALTAPIPVTSFLRRQQPVTGVSLRPFPNVGQSLFGLKLGSSRGGSMTVMAYKVKL 60
           MGSTTALTAPIPVTSFLRRQQPVTGVSLRPFPNVGQSLFGLKLGSSRGGSMTVMAYKVKL
Sbjct: 1   MGSTTALTAPIPVTSFLRRQQPVTGVSLRPFPNVGQSLFGLKLGSSRGGSMTVMAYKVKL 60

Query: 61  ITPEGEKEIECSGDDYILDAAEESGVDLPYSCRAGACSSCIGKLKSGKVDQSDNSFLDDQ 120
           ITPEGEKEIECSGDDYILDAAEESGVDLPYSCRAGACSSCIGKLKSGKVDQSDNSFLDDQ
Sbjct: 61  ITPEGEKEIECSGDDYILDAAEESGVDLPYSCRAGACSSCIGKLKSGKVDQSDNSFLDDQ 120

Query: 121 QMEDGWVLTCVARPESDIVIETHKEEVFADSA 153
           QMEDGWVLTCVARPESDIVIETHKEEVFADSA
Sbjct: 121 QMEDGWVLTCVARPESDIVIETHKEEVFADSA 152

[Close]

BLAST of Carg13204 vs. ExPASy TrEMBL
Match: A0A5A7TBH5 (Ferredoxin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold227G00090 PE=3 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 7.6e-56
Identity = 112/149 (75.17%), Postives = 125/149 (83.89%), Query Frame = 0


Query: 1   MGSTTALTAPIPVTSFLRRQQPVTGVSLRPFPNVGQSLFGLKLGSSRGGSMTVMAYKVKL 60
           MGSTTA T+P P TSFLRR  P  GVSL+PFPN+G+SLFGLK    RGG +T MAY VKL
Sbjct: 1   MGSTTAFTSPFPATSFLRR-NPTGGVSLKPFPNMGESLFGLK---HRGGRVTAMAYNVKL 60

Query: 61  ITPEGEKEIECSGDDYILDAAEESGVDLPYSCRAGACSSCIGKLKSGKVDQSDNSFLDDQ 120
           ITPEGEK I C  D YILDAAEE+G+DLPYSCRAGACSSCIGK+ SGK+DQSD SFLDD 
Sbjct: 61  ITPEGEKSITCPDDAYILDAAEENGIDLPYSCRAGACSSCIGKVVSGKLDQSDQSFLDDD 120

Query: 121 QMEDGWVLTCVARPESDIVIETHKEEVFA 150
           Q+ +GWVLTCVAR ESD+VIETHKE+VFA
Sbjct: 121 QVAEGWVLTCVARAESDVVIETHKEDVFA 145

[Close]

BLAST of Carg13204 vs. ExPASy TrEMBL
Match: A0A1S3C1X0 (Ferredoxin OS=Cucumis melo OX=3656 GN=LOC103496100 PE=3 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 7.6e-56
Identity = 112/149 (75.17%), Postives = 125/149 (83.89%), Query Frame = 0


Query: 1   MGSTTALTAPIPVTSFLRRQQPVTGVSLRPFPNVGQSLFGLKLGSSRGGSMTVMAYKVKL 60
           MGSTTA T+P P TSFLRR  P  GVSL+PFPN+G+SLFGLK    RGG +T MAY VKL
Sbjct: 1   MGSTTAFTSPFPATSFLRR-NPTGGVSLKPFPNMGESLFGLK---HRGGRVTAMAYNVKL 60

Query: 61  ITPEGEKEIECSGDDYILDAAEESGVDLPYSCRAGACSSCIGKLKSGKVDQSDNSFLDDQ 120
           ITPEGEK I C  D YILDAAEE+G+DLPYSCRAGACSSCIGK+ SGK+DQSD SFLDD 
Sbjct: 61  ITPEGEKSITCPDDAYILDAAEENGIDLPYSCRAGACSSCIGKVVSGKLDQSDQSFLDDD 120

Query: 121 QMEDGWVLTCVARPESDIVIETHKEEVFA 150
           Q+ +GWVLTCVAR ESD+VIETHKE+VFA
Sbjct: 121 QVAEGWVLTCVARAESDVVIETHKEDVFA 145

[Close]

BLAST of Carg13204 vs. ExPASy TrEMBL
Match: A0A0A0L764 (Ferredoxin OS=Cucumis sativus OX=3659 GN=Csa_3G222800 PE=3 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 2.4e-54
Identity = 106/149 (71.14%), Postives = 126/149 (84.56%), Query Frame = 0


Query: 1   MGSTTALTAPIPVTSFLRRQQPVTGVSLRPFPNVGQSLFGLKLGSSRGGSMTVMAYKVKL 60
           M STTA+T+P P TSF+RR  P  GVS +PFPN+G+SL+GLK    RGG + + AYKVKL
Sbjct: 1   MSSTTAITSPFPATSFIRR-NPTGGVSFKPFPNMGESLYGLK---HRGGRLAMKAYKVKL 60

Query: 61  ITPEGEKEIECSGDDYILDAAEESGVDLPYSCRAGACSSCIGKLKSGKVDQSDNSFLDDQ 120
           ITP+GEK +EC  D YILDAAEESG+DLPYSCRAGACSSC+GK+ SGK+DQSD SFLDD+
Sbjct: 61  ITPDGEKTVECDADLYILDAAEESGLDLPYSCRAGACSSCVGKVVSGKLDQSDQSFLDDE 120

Query: 121 QMEDGWVLTCVARPESDIVIETHKEEVFA 150
           Q+ +GWVLTCVARPESD+VIETHKE+ FA
Sbjct: 121 QVAEGWVLTCVARPESDLVIETHKEDSFA 145

[Close]

BLAST of Carg13204 vs. TAIR 10
Match: AT1G10960.1 (ferredoxin 1 )

HSP 1 Score: 192.2 bits (487), Expect = 3.1e-49
Identity = 100/147 (68.03%), Postives = 120/147 (81.63%), Query Frame = 0


Query: 3   STTALTAPIPVTSFLRRQQPVTGVSLR--PFPNVGQSLFGLKLGSSRGGSMTVMA-YKVK 62
           ++TAL++ I  TSFLRRQQ  T +SLR  PF N  QSLFGLK  ++RGG +T MA YKVK
Sbjct: 2   ASTALSSAIVSTSFLRRQQ--TPISLRSLPFANT-QSLFGLKSSTARGGRVTAMATYKVK 61

Query: 63  LITPEGEKEIECSGDDYILDAAEESGVDLPYSCRAGACSSCIGKLKSGKVDQSDNSFLDD 122
            ITPEGE+E+EC  D Y+LDAAEE+G+DLPYSCRAG+CSSC GK+ SG +DQSD SFLDD
Sbjct: 62  FITPEGEQEVECEEDVYVLDAAEEAGLDLPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDD 121

Query: 123 QQMEDGWVLTCVARPESDIVIETHKEE 147
           +QM +G+VLTCVA P SD+VIETHKEE
Sbjct: 122 EQMSEGYVLTCVAYPTSDVVIETHKEE 145

[Close]

BLAST of Carg13204 vs. TAIR 10
Match: AT1G60950.1 (2Fe-2S ferredoxin-like superfamily protein )

HSP 1 Score: 182.2 bits (461), Expect = 3.2e-46
Identity = 93/146 (63.70%), Postives = 114/146 (78.08%), Query Frame = 0


Query: 3   STTALTAPIPVTSFLRRQQPVTGVSLRPFPNVG-QSLFGLKLGSSRGGSMTVMA-YKVKL 62
           ++TAL++ I  TSF+RR      +SLR  P+   QSLFGLK G++RGG +T MA YKVK 
Sbjct: 2   ASTALSSAIVGTSFIRRSP--APISLRSLPSANTQSLFGLKSGTARGGRVTAMATYKVKF 61

Query: 63  ITPEGEKEIECSGDDYILDAAEESGVDLPYSCRAGACSSCIGKLKSGKVDQSDNSFLDDQ 122
           ITPEGE E+EC  D Y+LDAAEE+G+DLPYSCRAG+CSSC GK+ SG VDQSD SFLDD+
Sbjct: 62  ITPEGELEVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQSFLDDE 121

Query: 123 QMEDGWVLTCVARPESDIVIETHKEE 147
           Q+ +G+VLTC A P SD+ IETHKEE
Sbjct: 122 QIGEGFVLTCAAYPTSDVTIETHKEE 145

[Close]

BLAST of Carg13204 vs. TAIR 10
Match: AT2G27510.1 (ferredoxin 3 )

HSP 1 Score: 142.5 bits (358), Expect = 2.8e-34
Identity = 69/108 (63.89%), Postives = 82/108 (75.93%), Query Frame = 0


Query: 39  FGLKLGSSRGGSMTVMAYKVKLITPEG-EKEIECSGDDYILDAAEESGVDLPYSCRAGAC 98
           FGLK  ++ GG+     YKVKL+ P+G E E E   D YILDAAEE+GVDLPYSCRAGAC
Sbjct: 44  FGLKCSANSGGATMSAVYKVKLLGPDGQEDEFEVQDDQYILDAAEEAGVDLPYSCRAGAC 103

Query: 99  SSCIGKLKSGKVDQSDNSFLDDQQMEDGWVLTCVARPESDIVIETHKE 146
           S+C G++ SG VDQSD SFL+D  +E G+VLTCVA P+SD VI THKE
Sbjct: 104 STCAGQIVSGNVDQSDGSFLEDSHLEKGYVLTCVAYPQSDCVIHTHKE 151

[Close]

BLAST of Carg13204 vs. TAIR 10
Match: AT5G10000.1 (ferredoxin 4 )

HSP 1 Score: 114.0 bits (284), Expect = 1.1e-25
Identity = 59/107 (55.14%), Postives = 79/107 (73.83%), Query Frame = 0


Query: 43  LGSSRGGSMTVMA---YKVKLITPEG-EKEIECSGDDYILDAAEESGVDLPYSCRAGACS 102
           L SSRG    V A    KVKLI+PEG E+EIE + D  IL++AE +G++LPYSCR+G C 
Sbjct: 38  LSSSRGNFGKVFAKESRKVKLISPEGEEQEIEGNEDCCILESAENAGLELPYSCRSGTCG 97

Query: 103 SCIGKLKSGKVDQSDNSFLDDQQMEDGWVLTCVARPESDIVIETHKE 146
           +C GKL SGKVDQS  SFL+++Q++ G++LTC+A P  D V+ THK+
Sbjct: 98  TCCGKLVSGKVDQSLGSFLEEEQIQKGYILTCIALPLEDCVVYTHKQ 144

[Close]

BLAST of Carg13204 vs. TAIR 10
Match: AT4G14890.1 (2Fe-2S ferredoxin-like superfamily protein )

HSP 1 Score: 71.2 bits (173), Expect = 7.9e-13
Identity = 49/141 (34.75%), Postives = 66/141 (46.81%), Query Frame = 0


Query: 8   TAPIPV-TSFLRRQQPVTGVSLR-PFPNVGQSLFGLKLGSSRGGSMTVMAYKVKLITPEG 67
           T P+P  TS +   +P    S   P  N   S    +      G +   AYKV +     
Sbjct: 3   TLPLPTQTSTISLPKPYLSNSFSFPLRNATLSTTTNRRNFLTTGRIIARAYKVVVEHDGK 62

Query: 68  EKEIECSGDDYILDAAEESGVDLPYSCRAGACSSCIGKLKSGKVDQSDNSFLDDQQMEDG 127
             E+E   D+ IL  A +SG+D+PY C  G C +C  KL +G VDQS    L D  +E G
Sbjct: 63  TTELEVEPDETILSKALDSGLDVPYDCNLGVCMTCPAKLVTGTVDQS-GGMLSDDVVERG 122

Query: 128 WVLTCVARPESDIVIETHKEE 147
           + L C + P SD  I+   EE
Sbjct: 123 YTLLCASYPTSDCHIKMIPEE 142

The following BLAST results are available for this feature:

BLAST of Carg13204 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022941964.1	1.6e-79	100.00	ferredoxin-like [Cucurbita moschata] >XP_022983176.1 ferredoxin-like [Cucurbita ...	[more]
XP_038905955.1	4.0e-59	77.85	ferredoxin-like [Benincasa hispida]	[more]
XP_008456052.1	1.6e-55	75.17	PREDICTED: ferredoxin-like [Cucumis melo] >KAA0038971.1 ferredoxin-like [Cucumis...	[more]
XP_004146259.1	5.0e-54	71.14	ferredoxin, leaf L-A [Cucumis sativus] >KGN57598.1 hypothetical protein Csa_0110...	[more]
XP_022136604.1	5.6e-53	73.15	ferredoxin-like [Momordica charantia]	[more]

BLAST of Carg13204 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O04090	4.3e-48	68.03	Ferredoxin-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=FD1 PE=1 SV=1	[more]
P16972	4.4e-45	63.70	Ferredoxin-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=FD2 PE=1 SV=1	[more]
Q9ZTS2	1.6e-42	61.70	Ferredoxin, chloroplastic OS=Capsicum annuum OX=4072 GN=AP1 PE=1 SV=1	[more]
O04683	1.7e-41	57.64	Ferredoxin-1, chloroplastic OS=Mesembryanthemum crystallinum OX=3544 PE=2 SV=1	[more]
P00221	1.1e-40	58.33	Ferredoxin-1, chloroplastic OS=Spinacia oleracea OX=3562 GN=PETF PE=1 SV=2	[more]

BLAST of Carg13204 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J1D5	7.5e-80	100.00	Ferredoxin OS=Cucurbita maxima OX=3661 GN=LOC111481826 PE=3 SV=1	[more]
A0A6J1FPZ2	7.5e-80	100.00	Ferredoxin OS=Cucurbita moschata OX=3662 GN=LOC111447172 PE=3 SV=1	[more]
A0A5A7TBH5	7.6e-56	75.17	Ferredoxin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold227G00090 PE=...	[more]
A0A1S3C1X0	7.6e-56	75.17	Ferredoxin OS=Cucumis melo OX=3656 GN=LOC103496100 PE=3 SV=1	[more]
A0A0A0L764	2.4e-54	71.14	Ferredoxin OS=Cucumis sativus OX=3659 GN=Csa_3G222800 PE=3 SV=1	[more]

BLAST of Carg13204 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G10960.1	3.1e-49	68.03	ferredoxin 1	[more]
AT1G60950.1	3.2e-46	63.70	2Fe-2S ferredoxin-like superfamily protein	[more]
AT2G27510.1	2.8e-34	63.89	ferredoxin 3	[more]
AT5G10000.1	1.1e-25	55.14	ferredoxin 4	[more]
AT4G14890.1	7.9e-13	34.75	2Fe-2S ferredoxin-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012675	Beta-grasp domain superfamily	GENE3D	3.10.20.30		coord: 53..151 e-value: 8.5E-37 score: 126.9
IPR010241	Ferredoxin [2Fe-2S], plant	TIGRFAM	TIGR02008	TIGR02008	coord: 55..146 e-value: 4.7E-47 score: 155.7
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	PFAM	PF00111	Fer2	coord: 62..134 e-value: 2.9E-19 score: 68.8
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	PROSITE	PS51085	2FE2S_FER_2	coord: 56..146 score: 13.204103
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	CDD	cd00207	fer2	coord: 58..141 e-value: 5.07279E-33 score: 110.177
None	No IPR available	PANTHER	PTHR43112	FERREDOXIN	coord: 4..147
None	No IPR available	PANTHER	PTHR43112:SF17	FERREDOXIN-1, CHLOROPLASTIC	coord: 4..147
IPR006058	2Fe-2S ferredoxin, iron-sulphur binding site	PROSITE	PS00197	2FE2S_FER_1	coord: 92..100
IPR036010	2Fe-2S ferredoxin-like superfamily	SUPERFAMILY	54292	2Fe-2S ferredoxin-like	coord: 53..148

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg13204-RA	Carg13204-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0022900	electron transport chain
biological_process	GO:0006124	ferredoxin metabolic process
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0010008	endosome membrane
cellular_component	GO:0000139	Golgi membrane
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0051537	2 iron, 2 sulfur cluster binding
molecular_function	GO:0009055	electron transfer activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0051536	iron-sulfur cluster binding