Carg13186 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg13186
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	S4 RNA-binding domain-containing protein
Location	Carg_Chr04: 2930502 .. 2934183 (+)
RNA-Seq Expression	Carg13186
Synteny	Carg13186

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACGATACGCACTAACCATGGCGGCAGCGACTGCGAGCATTGGAGCTCTGTGGAGCCTAAGAAGAGCAGCTCAATCTTCCAGTTTCCGAACTCCCCTTGCCATTAATCTCGGCAAGGTCTCATTCCACGAGGCCCGGTTTCCCTCTTCTCCATCTTCTCCTCTTGGCGCCTCAGGTTTCGATTCGCTTCTTATCTATTGATTGTTCTTAGAGAAAAGTGTGAATTAGTATTGTTTAGTGAGCGGATTTGTCCTTGAATTGCACTGTGATTGCTGCTATGATCAAAATGATCGATCAATTAGTTCAGGAGATAATGAGCTTTGTATTGAGTATCAATTGGAATTCATTTTCCGTTTATAAACTTGTCTTTTATTAGCTTAATTTTAATTTCGAATGTATTGTAAATGAAATAGATGAGAATACTCTGTTTTAGTTCTTCTTGATGAAATCCTGAATGTTAACCCAAGTGTTGTTGCTTGAATTTTTCAAGATTTGTAAGTTATTCATCGTTGCAATGTCGTTTCAGGAATGTGCCAATTAGTGCAGGCTGTGAAGGGAGACATTGATGTTTTACTCAATGGAGTTGGAGATAAAGGTGTTATTGTAGATGTGAAACATATTCTTGTTATGGTATTGAATCCTGAAAAACTTTCACTGACATGTTAGTATTTAAGACTAGAGCCTTACAAGTTTATTGTTCGTCATCTTTTCTATCCATCTGCAAAGATTTAATAAGCTTGGATCTTCAAGTTTCTAGAAAATTAAAGGGAAACAGGCAGTCCTTTTTCTTCCCCTTTTATGTTGATGATGCTCGTATAAAAAGTAGAAAGTGATGGATGATTCTGGTTCTTCACTCTTTTTGGTTTCGTTTAGGCCAAACGTTCGTTATCAAGACGAGAAGTTCTCCATACAAACTTTCTCACTCCACCTGTGGTGAAAGAGTCAATGCTAGCCATTCAAAAACTAGCCGACGTGAAAGCAATAGCGCAGGGAGGATATCCAGAGGTGAAAATATAAAGGTCTTGTTATGTTTTTTCAGTTGGGGATTGTGTTTATGATTCTAAGATCTATTGCTGATACCACACTTCTTTCAAGTTGGCAAAATGTTTAGGCAGAGCGCTGTCGGATTTCTGTTGGGCATGCTGATGAACTAACAAGTGATCCAGACGTCGTTTCGGCATTGAGGTATTGTTCTTTATTCTTTCACATCAGTGCATTTTAATTGAGCTTTCGAGTAAAATCCGTTGTTCTTTGGTCATTTCTTCCTTTTAAGGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCTTCCCAGTATCACAGGAAATTTTGTGTTTCACACCTGCACACATGGGGACTTCCTTGGAGCAATTCTTGGCACAGGCATTGCTAGGGAAAAGCTTGGTGATATCATACTCCAGGTATTAGTATGTCCGCTATTTATTATAATTACAACTGCTTGTTCTTATTCTTACTGCACATTTGATGCTTCGTGCGTATTGCTATTGTTGGTTTTGCTTTACGGATTTGTTTTCTTATAAGGACTGTTCGAATTTGTAACTCAGTAAGTATCATAAATGCGTTTCACTTTGGTCATCTGTGCATTAGTTTTATGCTGAGAAGGTAAAAATTTCTTTGACAAATCCCAAAAATTGATGGTAAAAATTGTGTTTTGAGTTATCATGCTCTTGCCGCCTCCTGACTATGTTCAGAATTTTGATCAAAACTGATAAAATCTATCTTTCAATCTCTCCATGTGGAGCAAAACTTTTTGCAAAAGATTCAATTTAGGTTTGTGTAAATTTTTTAGGTTTTCAATAAAAGATTGTGATAAAGCTATTATGGGCCAGATTTATTTTATTCTCTTATACCTTACTTTCAGGAAGAGAAGGGAGCTCAAGTAGTTATTGTTCCAGAACTCGTCGACTTCCTTGTATCATCACTGCGCAAGGTAGTCTCGTTATCTTTGGCGGTTGCTTCTAACACGATGATACAGAAACTAACATGAGAATGGAAATATGATTTTTTTGAACTCTGACTGCATTTCTTGTGCGTATGAAACCCTGCATGGTCTAATAGAGCAACTCAAACTATTTGTAAATTTTCTTCATTGATCTCTTTATATGTTATGGCATTCTTAATTTCAGGTTGGCAATGTCACGGTTTCTTGTACGAGGATTCCATTGACAGATCTCGATTATGAACCACCGAAGTATGAAGTTATATCAATAACATTTCATATTGGTTTCCATGTTTATTTTAATGTAGTATTTTCTTATTTCATTTACAGGACTAAGACATTTAAAACCATTGAGGCATCTCTTAGGGTTGATGCTCTAGCAAGTGCTGGATTCAAGATTTCACGGTCTAAACTAGTGGATTTCATCAGGTACACAGGCTTCTACTAACCTATTAATTTTCCACATTGTGATAATTTCTAGCATGAAATGAATCAATTATCTATTTTTGTACATTATTGAACAAAAAATAATTTGTATTGCTCCTTCAGAATTTCATTTGTTCTTGGAAAGTATCATAATGATCCAAGAAAAGGGTTTGAGTTTTTTGAGCAATCAATTTGAAGAAATATTTTATAGGTTCCAAACCCGGAAAAGAATAGGGAAGACTTATGACAAAGTTTATGCATTGTTGAATCCTTACGCCATCGTGCTTCTCCCCTGTTACCTATTTTTACTAGCGGAATAGAGTTGACTTAATCCATAGGTTTACACCTTTTGCTCATTTGCCTGTTTGACTTTAATTACTCTGAAATTTTAGGCATCAGTTTAAAGTATAAGTAGATAGTTAAATGGTGCCATCATATGGTAATGTATAATAACAGACAACTTTGTCAAAGTTTCTAGGAATTAGGGTATTGCAATGTGTTATCTCCTATTTCTTTTGTGAAAGTATATGAACCTGAAATTGTTACATGAGCAGTGGCGGTGATGTACGTGTCAATTGGACGACGATTACTAAAAATGGAACCATACTAAAGACTGGTGATATTGTTTCTGTTAGTGGGAAAGGGAGACTAAAGGTGAAATTCTTAATTCAGTTGAAACCAAATCTAGTTGCACTACAGTTTTTCGAGCTTTAGCATTTCTGACTTCTGGTTGTTTTCCTCGTATTCAGATTGGCGAAATAAATCCTACAAAGAAGGGAAAATTCGCCATCGAGCTTATCAAGTACGTGTAGCTCTGGCGTATTGGATCGTTCGGAGTTGAACTGGGTAAAGATTGTCATGGAATCTCCCTCAAGGTCGAACTCAAGGAAGCATAAGAATAATTAAAGTAAGTCATTGTTCAACATGACATTAGTCTAATTTGTACATGTTAAAATCAGAACGCCCATTCATCCATTTGTAATTTATTAACCAAATAGACACAAAACTCAATGAGGATAAGATAATAGTTGAAAATCTTTTACTTTTGGTTTCAGGTAGTGATTTGAACACATTTGAATAGTTGTTCAAAGGAGTACCTAATGATCCAAACTGAAATTTGATGCTGAAATGGTGTATGGAGTACTTGAAAAGTGAATAACTGGCATTTTAGACTTTAAAGAACAATGGAAGAGAGGGATAAAAGGGGAAACTTGCGAGTGAAGTGTCTTGGTTTAGTGTTTAGGGTTAAATGTCTTATCCGTCTCACAGTTTTAAAACGTGTCTGTTAGAGAGTTTCC

mRNA sequence

ACGATACGCACTAACCATGGCGGCAGCGACTGCGAGCATTGGAGCTCTGTGGAGCCTAAGAAGAGCAGCTCAATCTTCCAGTTTCCGAACTCCCCTTGCCATTAATCTCGGCAAGGTCTCATTCCACGAGGCCCGGTTTCCCTCTTCTCCATCTTCTCCTCTTGGCGCCTCAGGAATGTGCCAATTAGTGCAGGCTGTGAAGGGAGACATTGATGTTTTACTCAATGGAGTTGGAGATAAAGGTGTTATTGTAGATGTGAAACATATTCTTGTTATGGCCAAACGTTCGTTATCAAGACGAGAAGTTCTCCATACAAACTTTCTCACTCCACCTGTGGTGAAAGAGTCAATGCTAGCCATTCAAAAACTAGCCGACGTGAAAGCAATAGCGCAGGGAGGATATCCAGAGGCAGAGCGCTGTCGGATTTCTGTTGGGCATGCTGATGAACTAACAAGTGATCCAGACGTCGTTTCGGCATTGAGTATCACAGGAAATTTTGTGTTTCACACCTGCACACATGGGGACTTCCTTGGAGCAATTCTTGGCACAGGCATTGCTAGGGAAAAGCTTGGTGATATCATACTCCAGGAAGAGAAGGGAGCTCAAGTAGTTATTGTTCCAGAACTCGTCGACTTCCTTGTATCATCACTGCGCAAGGTTGGCAATGTCACGGTTTCTTGTACGAGGATTCCATTGACAGATCTCGATTATGAACCACCGAAGACTAAGACATTTAAAACCATTGAGGCATCTCTTAGGGTTGATGCTCTAGCAAGTGCTGGATTCAAGATTTCACGGTCTAAACTAGTGGATTTCATCAGTGGCGGTGATGTACGTGTCAATTGGACGACGATTACTAAAAATGGAACCATACTAAAGACTGGTGATATTGTTTCTGTTAGTGGGAAAGGGAGACTAAAGATTGGCGAAATAAATCCTACAAAGAAGGGAAAATTCGCCATCGAGCTTATCAAGTACGTGTAGCTCTGGCGTATTGGATCGTTCGGAGTTGAACTGGGTAAAGATTGTCATGGAATCTCCCTCAAGGTCGAACTCAAGGAAGCATAAGAATAATTAAAGTAGTGATTTGAACACATTTGAATAGTTGTTCAAAGGAGTACCTAATGATCCAAACTGAAATTTGATGCTGAAATGGTGTATGGAGTACTTGAAAAGTGAATAACTGGCATTTTAGACTTTAAAGAACAATGGAAGAGAGGGATAAAAGGGGAAACTTGCGAGTGAAGTGTCTTGGTTTAGTGTTTAGGGTTAAATGTCTTATCCGTCTCACAGTTTTAAAACGTGTCTGTTAGAGAGTTTCC

Coding sequence (CDS)

ATGGCGGCAGCGACTGCGAGCATTGGAGCTCTGTGGAGCCTAAGAAGAGCAGCTCAATCTTCCAGTTTCCGAACTCCCCTTGCCATTAATCTCGGCAAGGTCTCATTCCACGAGGCCCGGTTTCCCTCTTCTCCATCTTCTCCTCTTGGCGCCTCAGGAATGTGCCAATTAGTGCAGGCTGTGAAGGGAGACATTGATGTTTTACTCAATGGAGTTGGAGATAAAGGTGTTATTGTAGATGTGAAACATATTCTTGTTATGGCCAAACGTTCGTTATCAAGACGAGAAGTTCTCCATACAAACTTTCTCACTCCACCTGTGGTGAAAGAGTCAATGCTAGCCATTCAAAAACTAGCCGACGTGAAAGCAATAGCGCAGGGAGGATATCCAGAGGCAGAGCGCTGTCGGATTTCTGTTGGGCATGCTGATGAACTAACAAGTGATCCAGACGTCGTTTCGGCATTGAGTATCACAGGAAATTTTGTGTTTCACACCTGCACACATGGGGACTTCCTTGGAGCAATTCTTGGCACAGGCATTGCTAGGGAAAAGCTTGGTGATATCATACTCCAGGAAGAGAAGGGAGCTCAAGTAGTTATTGTTCCAGAACTCGTCGACTTCCTTGTATCATCACTGCGCAAGGTTGGCAATGTCACGGTTTCTTGTACGAGGATTCCATTGACAGATCTCGATTATGAACCACCGAAGACTAAGACATTTAAAACCATTGAGGCATCTCTTAGGGTTGATGCTCTAGCAAGTGCTGGATTCAAGATTTCACGGTCTAAACTAGTGGATTTCATCAGTGGCGGTGATGTACGTGTCAATTGGACGACGATTACTAAAAATGGAACCATACTAAAGACTGGTGATATTGTTTCTGTTAGTGGGAAAGGGAGACTAAAGATTGGCGAAATAAATCCTACAAAGAAGGGAAAATTCGCCATCGAGCTTATCAAGTACGTGTAG

Protein sequence

MAAATASIGALWSLRRAAQSSSFRTPLAINLGKVSFHEARFPSSPSSPLGASGMCQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFVFHTCTHGDFLGAILGTGIAREKLGDIILQEEKGAQVVIVPELVDFLVSSLRKVGNVTVSCTRIPLTDLDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDFISGGDVRVNWTTITKNGTILKTGDIVSVSGKGRLKIGEINPTKKGKFAIELIKYV

Homology

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BLAST of Carg13186 vs. NCBI nr
Match: KAG6600381.1 (hypothetical protein SDJN03_05614, partial [Cucurbita argyrosperma subsp. sororia] >KAG7031043.1 ylmH [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 618.6 bits (1594), Expect = 3.0e-173
Identity = 322/322 (100.00%), Postives = 322/322 (100.00%), Query Frame = 0


Query: 1   MAAATASIGALWSLRRAAQSSSFRTPLAINLGKVSFHEARFPSSPSSPLGASGMCQLVQA 60
           MAAATASIGALWSLRRAAQSSSFRTPLAINLGKVSFHEARFPSSPSSPLGASGMCQLVQA
Sbjct: 1   MAAATASIGALWSLRRAAQSSSFRTPLAINLGKVSFHEARFPSSPSSPLGASGMCQLVQA 60

Query: 61  VKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLAD 120
           VKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLAD
Sbjct: 61  VKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLAD 120

Query: 121 VKAIAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFVFHTCTHGDFLGAILGTGI 180
           VKAIAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFVFHTCTHGDFLGAILGTGI
Sbjct: 121 VKAIAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFVFHTCTHGDFLGAILGTGI 180

Query: 181 AREKLGDIILQEEKGAQVVIVPELVDFLVSSLRKVGNVTVSCTRIPLTDLDYEPPKTKTF 240
           AREKLGDIILQEEKGAQVVIVPELVDFLVSSLRKVGNVTVSCTRIPLTDLDYEPPKTKTF
Sbjct: 181 AREKLGDIILQEEKGAQVVIVPELVDFLVSSLRKVGNVTVSCTRIPLTDLDYEPPKTKTF 240

Query: 241 KTIEASLRVDALASAGFKISRSKLVDFISGGDVRVNWTTITKNGTILKTGDIVSVSGKGR 300
           KTIEASLRVDALASAGFKISRSKLVDFISGGDVRVNWTTITKNGTILKTGDIVSVSGKGR
Sbjct: 241 KTIEASLRVDALASAGFKISRSKLVDFISGGDVRVNWTTITKNGTILKTGDIVSVSGKGR 300

Query: 301 LKIGEINPTKKGKFAIELIKYV 323
           LKIGEINPTKKGKFAIELIKYV
Sbjct: 301 LKIGEINPTKKGKFAIELIKYV 322

[Close]

BLAST of Carg13186 vs. NCBI nr
Match: XP_022941560.1 (uncharacterized protein LOC111446880 isoform X2 [Cucurbita moschata])

HSP 1 Score: 613.6 bits (1581), Expect = 9.7e-172
Identity = 319/322 (99.07%), Postives = 321/322 (99.69%), Query Frame = 0


Query: 1   MAAATASIGALWSLRRAAQSSSFRTPLAINLGKVSFHEARFPSSPSSPLGASGMCQLVQA 60
           MAAATASIGALWSLRRAA+SSSFRTPLA+NLGKVSFHEARFPSSPSSPLGASGMCQLVQA
Sbjct: 1   MAAATASIGALWSLRRAARSSSFRTPLAVNLGKVSFHEARFPSSPSSPLGASGMCQLVQA 60

Query: 61  VKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLAD 120
           VKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLAD
Sbjct: 61  VKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLAD 120

Query: 121 VKAIAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFVFHTCTHGDFLGAILGTGI 180
           VKAIAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFVF TCTHGDFLGAILGTGI
Sbjct: 121 VKAIAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFVFQTCTHGDFLGAILGTGI 180

Query: 181 AREKLGDIILQEEKGAQVVIVPELVDFLVSSLRKVGNVTVSCTRIPLTDLDYEPPKTKTF 240
           AREKLGDIILQEEKGAQVVIVPELVDFLVSSLRKVGNVTVSCTRIPLTDLDYEPPKTKTF
Sbjct: 181 AREKLGDIILQEEKGAQVVIVPELVDFLVSSLRKVGNVTVSCTRIPLTDLDYEPPKTKTF 240

Query: 241 KTIEASLRVDALASAGFKISRSKLVDFISGGDVRVNWTTITKNGTILKTGDIVSVSGKGR 300
           KTIEASLRVDALASAGFKISRSKLVDFISGGDVRVNWTTITKNGTILKTGDIVSVSGKGR
Sbjct: 241 KTIEASLRVDALASAGFKISRSKLVDFISGGDVRVNWTTITKNGTILKTGDIVSVSGKGR 300

Query: 301 LKIGEINPTKKGKFAIELIKYV 323
           LKIGEINPTKKGKFAIELIKYV
Sbjct: 301 LKIGEINPTKKGKFAIELIKYV 322

[Close]

BLAST of Carg13186 vs. NCBI nr
Match: XP_023554595.1 (uncharacterized protein LOC111811761 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 611.3 bits (1575), Expect = 4.8e-171
Identity = 317/322 (98.45%), Postives = 319/322 (99.07%), Query Frame = 0


Query: 1   MAAATASIGALWSLRRAAQSSSFRTPLAINLGKVSFHEARFPSSPSSPLGASGMCQLVQA 60
           MAAATASIGALWSLRRA  SSSFRTPLA+NL KVSFHEARFPSSPSSPLGASGMCQLVQA
Sbjct: 1   MAAATASIGALWSLRRATLSSSFRTPLAVNLSKVSFHEARFPSSPSSPLGASGMCQLVQA 60

Query: 61  VKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLAD 120
           VKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLAD
Sbjct: 61  VKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLAD 120

Query: 121 VKAIAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFVFHTCTHGDFLGAILGTGI 180
           VKAIAQGGYPEAERCRISVGHADELTSDPD+VSALSITGNFVFHTCTHGDFLGAILGTGI
Sbjct: 121 VKAIAQGGYPEAERCRISVGHADELTSDPDIVSALSITGNFVFHTCTHGDFLGAILGTGI 180

Query: 181 AREKLGDIILQEEKGAQVVIVPELVDFLVSSLRKVGNVTVSCTRIPLTDLDYEPPKTKTF 240
           AREKLGDIILQEEKGAQVVIVPELVDFLVSSLRKVGNVTVSCTRIPLTDLDYEPPKTKTF
Sbjct: 181 AREKLGDIILQEEKGAQVVIVPELVDFLVSSLRKVGNVTVSCTRIPLTDLDYEPPKTKTF 240

Query: 241 KTIEASLRVDALASAGFKISRSKLVDFISGGDVRVNWTTITKNGTILKTGDIVSVSGKGR 300
           KTIEASLRVDALASAGFKISRSKLVDFISGGDVRVNWTTITKNGTILKTGDIVSVSGKGR
Sbjct: 241 KTIEASLRVDALASAGFKISRSKLVDFISGGDVRVNWTTITKNGTILKTGDIVSVSGKGR 300

Query: 301 LKIGEINPTKKGKFAIELIKYV 323
           LKIGEINPTKKGKFAIELIKYV
Sbjct: 301 LKIGEINPTKKGKFAIELIKYV 322

[Close]

BLAST of Carg13186 vs. NCBI nr
Match: XP_022941558.1 (uncharacterized protein LOC111446880 isoform X1 [Cucurbita moschata])

HSP 1 Score: 609.0 bits (1569), Expect = 2.4e-170
Identity = 319/323 (98.76%), Postives = 321/323 (99.38%), Query Frame = 0


Query: 1   MAAATASIGALWSLRRAAQSSSFRTPLAINLGKVSFHEARFPSSPSSPLGASGMCQLVQA 60
           MAAATASIGALWSLRRAA+SSSFRTPLA+NLGKVSFHEARFPSSPSSPLGASGMCQLVQA
Sbjct: 1   MAAATASIGALWSLRRAARSSSFRTPLAVNLGKVSFHEARFPSSPSSPLGASGMCQLVQA 60

Query: 61  VKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLAD 120
           VKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLAD
Sbjct: 61  VKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLAD 120

Query: 121 VKAIAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFVFHTCTHGDFLGAILGTGI 180
           VKAIAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFVF TCTHGDFLGAILGTGI
Sbjct: 121 VKAIAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFVFQTCTHGDFLGAILGTGI 180

Query: 181 AREKLGDIILQEEKGAQVVIVPELVDFLVSSLRKVGNVTVSCTRIPLTDLDYEPPKTKTF 240
           AREKLGDIILQEEKGAQVVIVPELVDFLVSSLRKVGNVTVSCTRIPLTDLDYEPPKTKTF
Sbjct: 181 AREKLGDIILQEEKGAQVVIVPELVDFLVSSLRKVGNVTVSCTRIPLTDLDYEPPKTKTF 240

Query: 241 KTIEASLRVDALASAGFKISRSKLVDFI-SGGDVRVNWTTITKNGTILKTGDIVSVSGKG 300
           KTIEASLRVDALASAGFKISRSKLVDFI SGGDVRVNWTTITKNGTILKTGDIVSVSGKG
Sbjct: 241 KTIEASLRVDALASAGFKISRSKLVDFISSGGDVRVNWTTITKNGTILKTGDIVSVSGKG 300

Query: 301 RLKIGEINPTKKGKFAIELIKYV 323
           RLKIGEINPTKKGKFAIELIKYV
Sbjct: 301 RLKIGEINPTKKGKFAIELIKYV 323

[Close]

BLAST of Carg13186 vs. NCBI nr
Match: XP_022981895.1 (uncharacterized protein LOC111480897 isoform X1 [Cucurbita maxima])

HSP 1 Score: 602.8 bits (1553), Expect = 1.7e-168
Identity = 311/322 (96.58%), Postives = 318/322 (98.76%), Query Frame = 0


Query: 1   MAAATASIGALWSLRRAAQSSSFRTPLAINLGKVSFHEARFPSSPSSPLGASGMCQLVQA 60
           MAAATASIGALWSLRRAAQSSS RTPLA+NL KVSFHEARFP+SPSSPLG+SGMCQLVQA
Sbjct: 1   MAAATASIGALWSLRRAAQSSSLRTPLAVNLSKVSFHEARFPTSPSSPLGSSGMCQLVQA 60

Query: 61  VKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLAD 120
           VKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLAI+KLAD
Sbjct: 61  VKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLAIKKLAD 120

Query: 121 VKAIAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFVFHTCTHGDFLGAILGTGI 180
           VKAIAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNF+FHTCTHGDFLGAILGTGI
Sbjct: 121 VKAIAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFMFHTCTHGDFLGAILGTGI 180

Query: 181 AREKLGDIILQEEKGAQVVIVPELVDFLVSSLRKVGNVTVSCTRIPLTDLDYEPPKTKTF 240
           AREKLGDIILQEEKGAQVVIVPELVDFLVSSL KVGNVTVSCTRIPLTDLDYEPPKTKTF
Sbjct: 181 AREKLGDIILQEEKGAQVVIVPELVDFLVSSLHKVGNVTVSCTRIPLTDLDYEPPKTKTF 240

Query: 241 KTIEASLRVDALASAGFKISRSKLVDFISGGDVRVNWTTITKNGTILKTGDIVSVSGKGR 300
           KTIEASLRVDALASAGFKISRSKLVDFIS GDVRVNWTTITKNGTILKTGDIVSVSGKGR
Sbjct: 241 KTIEASLRVDALASAGFKISRSKLVDFISSGDVRVNWTTITKNGTILKTGDIVSVSGKGR 300

Query: 301 LKIGEINPTKKGKFAIELIKYV 323
           LKIGEINPTKKGKFA+ELI+YV
Sbjct: 301 LKIGEINPTKKGKFAVELIRYV 322

[Close]

BLAST of Carg13186 vs. ExPASy Swiss-Prot
Match: P71020 (Putative RNA-binding protein YlmH OS=Bacillus subtilis (strain 168) OX=224308 GN=ylmH PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 5.2e-19
Identity = 67/222 (30.18%), Postives = 114/222 (51.35%), Query Frame = 0


Query: 100 TNFLTPPVVKESML--AIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPD--VVSAL 159
           T+FL P   +E ++  A+   ADV     GGY  AER R ++   + +T +     + A 
Sbjct: 35  TDFLDP---REQVILSAVTGQADVGLAFSGGYDRAERKR-AILFPEYITPEESDFELQAF 94

Query: 160 SITGNFVFHTCTHGDFLGAILGTGIAREKLGDIILQEEKGAQVVIVPELVDFLVSSLRKV 219
           ++     F +  H   LGA++G G+ R+K GDI+   E   Q+++  +  DF+ + L + 
Sbjct: 95  NVRYADKFVSVDHRSLLGALMGIGLKRQKFGDIVF-SETAVQLIVSADTADFVAAQLTQA 154

Query: 220 GNVTVSCTRIPLTDLDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDFISGGDVRV 279
           G   VS  +I L+DL+      +      +SLR+DA+ ++  + SR K    +  G V+V
Sbjct: 155 GKAAVSLEKIDLSDLNIPAVDVEIRDDTVSSLRLDAVCASMSRQSRQKSQTLVKNGLVKV 214

Query: 280 NWTTITKNGTILKTGDIVSVSGKGRLKIGEI-NPTKKGKFAI 317
           NW  +     I+  GD++S+ G GR  + +I   TKK K+ +
Sbjct: 215 NWKVVEDPSYIVAEGDMLSIRGFGRCSLTKIEGKTKKDKWRV 251

[Close]

BLAST of Carg13186 vs. ExPASy TrEMBL
Match: A0A6J1FU11 (uncharacterized protein LOC111446880 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111446880 PE=4 SV=1)

HSP 1 Score: 613.6 bits (1581), Expect = 4.7e-172
Identity = 319/322 (99.07%), Postives = 321/322 (99.69%), Query Frame = 0


Query: 1   MAAATASIGALWSLRRAAQSSSFRTPLAINLGKVSFHEARFPSSPSSPLGASGMCQLVQA 60
           MAAATASIGALWSLRRAA+SSSFRTPLA+NLGKVSFHEARFPSSPSSPLGASGMCQLVQA
Sbjct: 1   MAAATASIGALWSLRRAARSSSFRTPLAVNLGKVSFHEARFPSSPSSPLGASGMCQLVQA 60

Query: 61  VKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLAD 120
           VKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLAD
Sbjct: 61  VKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLAD 120

Query: 121 VKAIAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFVFHTCTHGDFLGAILGTGI 180
           VKAIAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFVF TCTHGDFLGAILGTGI
Sbjct: 121 VKAIAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFVFQTCTHGDFLGAILGTGI 180

Query: 181 AREKLGDIILQEEKGAQVVIVPELVDFLVSSLRKVGNVTVSCTRIPLTDLDYEPPKTKTF 240
           AREKLGDIILQEEKGAQVVIVPELVDFLVSSLRKVGNVTVSCTRIPLTDLDYEPPKTKTF
Sbjct: 181 AREKLGDIILQEEKGAQVVIVPELVDFLVSSLRKVGNVTVSCTRIPLTDLDYEPPKTKTF 240

Query: 241 KTIEASLRVDALASAGFKISRSKLVDFISGGDVRVNWTTITKNGTILKTGDIVSVSGKGR 300
           KTIEASLRVDALASAGFKISRSKLVDFISGGDVRVNWTTITKNGTILKTGDIVSVSGKGR
Sbjct: 241 KTIEASLRVDALASAGFKISRSKLVDFISGGDVRVNWTTITKNGTILKTGDIVSVSGKGR 300

Query: 301 LKIGEINPTKKGKFAIELIKYV 323
           LKIGEINPTKKGKFAIELIKYV
Sbjct: 301 LKIGEINPTKKGKFAIELIKYV 322

[Close]

BLAST of Carg13186 vs. ExPASy TrEMBL
Match: A0A6J1FSF6 (uncharacterized protein LOC111446880 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111446880 PE=4 SV=1)

HSP 1 Score: 609.0 bits (1569), Expect = 1.2e-170
Identity = 319/323 (98.76%), Postives = 321/323 (99.38%), Query Frame = 0


Query: 1   MAAATASIGALWSLRRAAQSSSFRTPLAINLGKVSFHEARFPSSPSSPLGASGMCQLVQA 60
           MAAATASIGALWSLRRAA+SSSFRTPLA+NLGKVSFHEARFPSSPSSPLGASGMCQLVQA
Sbjct: 1   MAAATASIGALWSLRRAARSSSFRTPLAVNLGKVSFHEARFPSSPSSPLGASGMCQLVQA 60

Query: 61  VKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLAD 120
           VKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLAD
Sbjct: 61  VKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLAD 120

Query: 121 VKAIAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFVFHTCTHGDFLGAILGTGI 180
           VKAIAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFVF TCTHGDFLGAILGTGI
Sbjct: 121 VKAIAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFVFQTCTHGDFLGAILGTGI 180

Query: 181 AREKLGDIILQEEKGAQVVIVPELVDFLVSSLRKVGNVTVSCTRIPLTDLDYEPPKTKTF 240
           AREKLGDIILQEEKGAQVVIVPELVDFLVSSLRKVGNVTVSCTRIPLTDLDYEPPKTKTF
Sbjct: 181 AREKLGDIILQEEKGAQVVIVPELVDFLVSSLRKVGNVTVSCTRIPLTDLDYEPPKTKTF 240

Query: 241 KTIEASLRVDALASAGFKISRSKLVDFI-SGGDVRVNWTTITKNGTILKTGDIVSVSGKG 300
           KTIEASLRVDALASAGFKISRSKLVDFI SGGDVRVNWTTITKNGTILKTGDIVSVSGKG
Sbjct: 241 KTIEASLRVDALASAGFKISRSKLVDFISSGGDVRVNWTTITKNGTILKTGDIVSVSGKG 300

Query: 301 RLKIGEINPTKKGKFAIELIKYV 323
           RLKIGEINPTKKGKFAIELIKYV
Sbjct: 301 RLKIGEINPTKKGKFAIELIKYV 323

[Close]

BLAST of Carg13186 vs. ExPASy TrEMBL
Match: A0A6J1J103 (uncharacterized protein LOC111480897 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111480897 PE=4 SV=1)

HSP 1 Score: 602.8 bits (1553), Expect = 8.3e-169
Identity = 311/322 (96.58%), Postives = 318/322 (98.76%), Query Frame = 0


Query: 1   MAAATASIGALWSLRRAAQSSSFRTPLAINLGKVSFHEARFPSSPSSPLGASGMCQLVQA 60
           MAAATASIGALWSLRRAAQSSS RTPLA+NL KVSFHEARFP+SPSSPLG+SGMCQLVQA
Sbjct: 1   MAAATASIGALWSLRRAAQSSSLRTPLAVNLSKVSFHEARFPTSPSSPLGSSGMCQLVQA 60

Query: 61  VKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLAD 120
           VKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLAI+KLAD
Sbjct: 61  VKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLAIKKLAD 120

Query: 121 VKAIAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFVFHTCTHGDFLGAILGTGI 180
           VKAIAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNF+FHTCTHGDFLGAILGTGI
Sbjct: 121 VKAIAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFMFHTCTHGDFLGAILGTGI 180

Query: 181 AREKLGDIILQEEKGAQVVIVPELVDFLVSSLRKVGNVTVSCTRIPLTDLDYEPPKTKTF 240
           AREKLGDIILQEEKGAQVVIVPELVDFLVSSL KVGNVTVSCTRIPLTDLDYEPPKTKTF
Sbjct: 181 AREKLGDIILQEEKGAQVVIVPELVDFLVSSLHKVGNVTVSCTRIPLTDLDYEPPKTKTF 240

Query: 241 KTIEASLRVDALASAGFKISRSKLVDFISGGDVRVNWTTITKNGTILKTGDIVSVSGKGR 300
           KTIEASLRVDALASAGFKISRSKLVDFIS GDVRVNWTTITKNGTILKTGDIVSVSGKGR
Sbjct: 241 KTIEASLRVDALASAGFKISRSKLVDFISSGDVRVNWTTITKNGTILKTGDIVSVSGKGR 300

Query: 301 LKIGEINPTKKGKFAIELIKYV 323
           LKIGEINPTKKGKFA+ELI+YV
Sbjct: 301 LKIGEINPTKKGKFAVELIRYV 322

[Close]

BLAST of Carg13186 vs. ExPASy TrEMBL
Match: A0A6J1CP18 (uncharacterized protein LOC111012786 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111012786 PE=4 SV=1)

HSP 1 Score: 553.1 bits (1424), Expect = 7.5e-154
Identity = 283/319 (88.71%), Postives = 300/319 (94.04%), Query Frame = 0


Query: 4   ATASIGALWSLRRAAQSSSFRTPLAINLGKVSFHEARFPSSPSSPLGASGMCQLVQAVKG 63
           A  SIGALWSLRRAAQ+SSFR PLA+NL   SFH+ARFP SPSSP G+SG+CQLVQAVKG
Sbjct: 2   AATSIGALWSLRRAAQASSFRIPLALNL---SFHQARFPPSPSSPPGSSGICQLVQAVKG 61

Query: 64  DIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLADVKA 123
           DIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLADVKA
Sbjct: 62  DIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLADVKA 121

Query: 124 IAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFVFHTCTHGDFLGAILGTGIARE 183
           IAQGGYPEAERCRISVGHADELTSDPD++SALSITGNF FH C+HGDFLG+ILGTGIARE
Sbjct: 122 IAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIARE 181

Query: 184 KLGDIILQEEKGAQVVIVPELVDFLVSSLRKVGNVTVSCTRIPLTDLDYEPPKTKTFKTI 243
           KLGDIILQ E GAQVV+VPELVDFL+SSLRKVGNVTVSCTRIPLT LDYEPPKTKTF TI
Sbjct: 182 KLGDIILQGENGAQVVLVPELVDFLISSLRKVGNVTVSCTRIPLTALDYEPPKTKTFNTI 241

Query: 244 EASLRVDALASAGFKISRSKLVDFISGGDVRVNWTTITKNGTILKTGDIVSVSGKGRLKI 303
           EASLRVDA+ASAGFKISRSKLVD IS GDVRVNWT +TKNGT LKTGD+VSVSGKGRLKI
Sbjct: 242 EASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPVTKNGTTLKTGDVVSVSGKGRLKI 301

Query: 304 GEINPTKKGKFAIELIKYV 323
           GEIN TKKGKF++ELI+YV
Sbjct: 302 GEINSTKKGKFSVELIRYV 317

[Close]

BLAST of Carg13186 vs. ExPASy TrEMBL
Match: A0A0A0LC56 (S4 RNA-binding domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G233470 PE=4 SV=1)

HSP 1 Score: 552.4 bits (1422), Expect = 1.3e-153
Identity = 286/322 (88.82%), Postives = 302/322 (93.79%), Query Frame = 0


Query: 1   MAAATASIGALWSLRRAAQSSSFRTPLAINLGKVSFHEARFPSSPSSPLGASGMCQLVQA 60
           MAA   SI ALWSLRRAAQ SSFR PLA+NL ++ F+EARF   PSSPLG SG+CQLVQA
Sbjct: 1   MAATATSIAALWSLRRAAQFSSFRRPLALNLNRLCFNEARF---PSSPLGTSGICQLVQA 60

Query: 61  VKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLAD 120
           VKGDIDVLLNGVGDKGVIVDVK ILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLAD
Sbjct: 61  VKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLAD 120

Query: 121 VKAIAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFVFHTCTHGDFLGAILGTGI 180
           VKAIAQGGYPEAERCRISVGHADELTSDPD++SALSITGNF FH C+HGDFLG+ILGTGI
Sbjct: 121 VKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGI 180

Query: 181 AREKLGDIILQEEKGAQVVIVPELVDFLVSSLRKVGNVTVSCTRIPLTDLDYEPPKTKTF 240
           AREKLGDI+LQEE GAQVVIVPELVDFL+SSLRKVGNVTVSCTRIPLT L+YEPPKTKTF
Sbjct: 181 AREKLGDIMLQEETGAQVVIVPELVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTF 240

Query: 241 KTIEASLRVDALASAGFKISRSKLVDFISGGDVRVNWTTITKNGTILKTGDIVSVSGKGR 300
           KTIEASLRVDA+ASAGFKISRSKLVD IS GDVRVNWT+ITKNGTILKTGDIVSVSGKGR
Sbjct: 241 KTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTSITKNGTILKTGDIVSVSGKGR 300

Query: 301 LKIGEINPTKKGKFAIELIKYV 323
           LKIGEIN TKKGKFA+ELI+YV
Sbjct: 301 LKIGEINSTKKGKFAVELIRYV 319

[Close]

BLAST of Carg13186 vs. TAIR 10
Match: AT1G53120.1 (RNA-binding S4 domain-containing protein )

HSP 1 Score: 408.7 bits (1049), Expect = 4.4e-114
Identity = 207/319 (64.89%), Postives = 252/319 (79.00%), Query Frame = 0


Query: 4   ATASIGALWSLRRAAQSSSFRTPLAINLGKVSFHEARFPSSPSSPLGASGMCQLVQAVKG 63
           A  S+   W + R A  S   +       K        P+S      A   C   +A+KG
Sbjct: 2   AVTSLAPPWVILRLAFRSVAASSCLHTNQKTLITNLSIPTSFPLRQSALRRCYSAEAIKG 61

Query: 64  DIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLADVKA 123
           D+D LL GVGD+ V  +VK IL MA+R+ S+REVLHT+FLTPP+VKES+  ++K ADVK 
Sbjct: 62  DVDFLLKGVGDQAVAKEVKQILEMARRASSKREVLHTDFLTPPIVKESVSLLEKFADVKI 121

Query: 124 IAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFVFHTCTHGDFLGAILGTGIARE 183
           +AQGGYPEAERCRIS+GH D LTSDPD+V+ALSITGNF F  C+HGDFLGAILGTGI+RE
Sbjct: 122 VAQGGYPEAERCRISIGHPDVLTSDPDIVAALSITGNFGFQPCSHGDFLGAILGTGISRE 181

Query: 184 KLGDIILQEEKGAQVVIVPELVDFLVSSLRKVGNVTVSCTRIPLTDLDYEPPKTKTFKTI 243
           KLGDI++QEEKGAQV+IVPELVDF+V++L KVGNV V+C++IPL  L+YEPP+T +FKT+
Sbjct: 182 KLGDILIQEEKGAQVLIVPELVDFVVTALDKVGNVGVTCSKIPLLALEYEPPRTNSFKTV 241

Query: 244 EASLRVDALASAGFKISRSKLVDFISGGDVRVNWTTITKNGTILKTGDIVSVSGKGRLKI 303
           EASLR+DA+ASAGFKISRSKLVD IS  DVRVNW T+TKNGTI+KTGD+VSVSGKGRLKI
Sbjct: 242 EASLRIDAVASAGFKISRSKLVDLISSKDVRVNWATVTKNGTIVKTGDVVSVSGKGRLKI 301

Query: 304 GEINPTKKGKFAIELIKYV 323
           GEIN TKKGKFA+E+I+Y+
Sbjct: 302 GEINETKKGKFAVEIIRYL 320

The following BLAST results are available for this feature:

BLAST of Carg13186 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6600381.1	3.0e-173	100.00	hypothetical protein SDJN03_05614, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022941560.1	9.7e-172	99.07	uncharacterized protein LOC111446880 isoform X2 [Cucurbita moschata]	[more]
XP_023554595.1	4.8e-171	98.45	uncharacterized protein LOC111811761 isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_022941558.1	2.4e-170	98.76	uncharacterized protein LOC111446880 isoform X1 [Cucurbita moschata]	[more]
XP_022981895.1	1.7e-168	96.58	uncharacterized protein LOC111480897 isoform X1 [Cucurbita maxima]	[more]

BLAST of Carg13186 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P71020	5.2e-19	30.18	Putative RNA-binding protein YlmH OS=Bacillus subtilis (strain 168) OX=224308 GN...	[more]

BLAST of Carg13186 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FU11	4.7e-172	99.07	uncharacterized protein LOC111446880 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1FSF6	1.2e-170	98.76	uncharacterized protein LOC111446880 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1J103	8.3e-169	96.58	uncharacterized protein LOC111480897 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1CP18	7.5e-154	88.71	uncharacterized protein LOC111012786 isoform X1 OS=Momordica charantia OX=3673 G...	[more]
A0A0A0LC56	1.3e-153	88.82	S4 RNA-binding domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G233...	[more]

BLAST of Carg13186 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G53120.1	4.4e-114	64.89	RNA-binding S4 domain-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002942	RNA-binding S4 domain	SMART	SM00363	s4_6	coord: 247..307 e-value: 2.3E-10 score: 50.4
IPR002942	RNA-binding S4 domain	PFAM	PF01479	S4	coord: 251..293 e-value: 2.1E-7 score: 30.5
IPR002942	RNA-binding S4 domain	CDD	cd00165	S4	coord: 248..302 e-value: 3.13112E-10 score: 53.4074
IPR036986	RNA-binding S4 domain superfamily	GENE3D	3.10.290.10		coord: 239..298 e-value: 2.4E-6 score: 28.9
IPR017506	Photosystem II S4	TIGRFAM	TIGR03069	TIGR03069	coord: 80..319 e-value: 2.6E-93 score: 309.8
IPR040591	YlmH, putative RNA-binding domain	PFAM	PF17774	YlmH_RBD	coord: 154..229 e-value: 2.6E-14 score: 53.3
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 149..231 e-value: 2.8E-22 score: 80.3
None	No IPR available	PANTHER	PTHR32219	RNA-BINDING PROTEIN YLMH-RELATED	coord: 53..321
None	No IPR available	PANTHER	PTHR32219:SF3	RNA-BINDING PROTEIN YLMH-RELATED	coord: 53..321
None	No IPR available	PROSITE	PS50889	S4	coord: 247..307 score: 13.414023
None	No IPR available	SUPERFAMILY	55174	Alpha-L RNA-binding motif	coord: 152..309

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg13186-RA	Carg13186-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding