Carg13184 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg13184
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	signaling peptide TAXIMIN 2-like
Location	Carg_Chr04: 2939196 .. 2941050 (+)
RNA-Seq Expression	Carg13184
Synteny	Carg13184

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCATGTTGCAGGCCATTAGGGTTCTTGATAGGCCTACCATTTGCCCTTCTTTCCTTATCTCTCTCCTTCGTTGGTTCTCTTCTTTTCATCTTTTTGTAAGTTTCTTTTCTTCTTCGTTATCGTTTAATTCTAACCCGTTTTTTCAATTTTTTCGTTTCGATATCATGTCGAGAAACACAACCACGAACAAAAACAAACCCTAATTTTCTCGGAATGCATGCTCCTGTTCTTCGTCGTCTACGATTAGGGTTTTATCTTGCATTTTTGTTGGTTTGAATGCATGCTCCTGTTCTTCATGTCTACGATTAGGATTTTATCTTACATTTTTGTTGGTTTGAATGCATGCTCCCGTTTTTCGTGTCTACAATTAGGGTTTTATCTTGCATTTTTGTTGGTTCGATATCATGTCAAGAAACACAAACAAAAAAACAAACCCTAATTTTCTCGGAATGCATCCTCCTGTTCTTCGTGTCTACGATTAGGGTTTTATCTTGCATTTTTATTGGTTTGATATCATGTCGAGAAACACAAACACAAACAAAAACAAACCCTAATTTCCTCGAAATGCATGCTCCCATTCTTCGTGTCTACGATTAGAGTTTTATCTTTCATTTTTGTTGGTTTGAATGCATGCTTCCATTCTTCGTGTCTATGATTAGGGTTTTATCTTGCATTTTTGTTGGTTTGAATGCATGCTCCCATTTTTCGTGTCTACGATTAGGGTTTTATCTTGCATTTTTATTGGTTTGATATCATGTCGAGAAACACAAACACAAATAAAAACAAACCCTAATTTCCTCGAAATGCATGCTCCCGTTCTTCGTGTCTACGATTAGGGTTTTATCTTGCCTTTTTGTTGGTTTGAATGCATGCTCCCATTTTTCGTGTCTACGATTAGGGTTTTATCTTGCATTTTTATTGGTTTGATATCATGTCGAGAAACACAAACACAAATAAAAACAAACCCTAATTTCCTCGAAATGCATGCTCCCGTTCTTCGTGTCTACGATTAGGGTTTTATCTTGCATTTTTTGGTTTGAATGCATGCTCCCATTTTTCATGTCTACGATTAGGGTTTTTTATCTTGCATTTTTATTGGTTTGATATCATGTCGAGAAACACAAACACAAAAACAAAACAAACCTAATTTCCTCGAAATGCATGCTCCCGTTCTTCGTGTCTACGATTAGGGTTTTATCTTGCATTTTTGTTAGTTTGATATCATGTCGAGAAACACAAACACAAACAAAAACAAACCCTAATTTCCTCGAAATGCATGCTCCCGTTCTTCGTGTCTACGATTAGGGTTTTATCTTGCATTTTTGTTAGTTTGATATCATGTCGAGAAACACAAACACAAACAAAAACAAACCCTAATTTCCTCGAAATGCATGCTCCCATTCTTCGTGTCTACGATTAGAGTTTTATCTTGCATTTTTGTTGGTTTGAATGCATGCTCCCATTTTTCGTGTCTACGACTAGGGTCTTATCTTGCATTTTTATTGGTTTGATATCATGTCGAGAAACACAAACAAAAACAAACCCTAATTTCCTCGAAATGCATGCTCCCGTTCTTCGTGTCTACGATTAGGGTTTTATCTTGCCTTTTTGTTGGTTTGAATGCATGCTCCCATTTTTCGTGTCTACGATTAGGATTTTATCTTGCATTTTAGTTGGTTTCGATCCGATTTTGATTAATGTTTGTATGGTTTTTGATGACTTGGGTAGGTCCCTTTTGAGCTGCATTTGCCCTTGCTGTGTGTGTGTTGCAATACTTATAAGTTTCTCAATCAGCCTTGTGAAGCTTCCCATCAATATAATTATTTGGTTCACTGATATGATTCCTTTTTAG

mRNA sequence

ATGGCATGTTGCAGGCCATTAGGGTTCTTGATAGGCCTACCATTTGCCCTTCTTTCCTTATCTCTCTCCTTCGTTGGTTCTCTTCTTTTCATCTTTTTGATTTTATCTTGCATTTTAGTTGGTTTCGATCCGATTTTGATTAATGTTTGTATGGTTTTTGATGACTTGGGTAGGTCCCTTTTGAGCTGCATTTGCCCTTGCTGTGTGTGTGTTGCAATACTTATAAGTTTCTCAATCAGCCTTGTGAAGCTTCCCATCAATATAATTATTTGGTTCACTGATATGATTCCTTTTTAG

Coding sequence (CDS)

ATGGCATGTTGCAGGCCATTAGGGTTCTTGATAGGCCTACCATTTGCCCTTCTTTCCTTATCTCTCTCCTTCGTTGGTTCTCTTCTTTTCATCTTTTTGATTTTATCTTGCATTTTAGTTGGTTTCGATCCGATTTTGATTAATGTTTGTATGGTTTTTGATGACTTGGGTAGGTCCCTTTTGAGCTGCATTTGCCCTTGCTGTGTGTGTGTTGCAATACTTATAAGTTTCTCAATCAGCCTTGTGAAGCTTCCCATCAATATAATTATTTGGTTCACTGATATGATTCCTTTTTAG

Protein sequence

MACCRPLGFLIGLPFALLSLSLSFVGSLLFIFLILSCILVGFDPILINVCMVFDDLGRSLLSCICPCCVCVAILISFSISLVKLPINIIIWFTDMIPF

Homology

[Close]

BLAST of Carg13184 vs. NCBI nr
Match: KAG7031045.1 (hypothetical protein SDJN02_05084, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 183.3 bits (464), Expect = 9.8e-43
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 1  MACCRPLGFLIGLPFALLSLSLSFVGSLLFIFLILSCILVGFDPILINVCMVFDDLGRSL 60
          MACCRPLGFLIGLPFALLSLSLSFVGSLLFIFLILSCILVGFDPILINVCMVFDDLGRSL
Sbjct: 1  MACCRPLGFLIGLPFALLSLSLSFVGSLLFIFLILSCILVGFDPILINVCMVFDDLGRSL 60

Query: 61 LSCICPCCVCVAILISFSISLVKLPINIIIWFTDMIPF 99
          LSCICPCCVCVAILISFSISLVKLPINIIIWFTDMIPF
Sbjct: 61 LSCICPCCVCVAILISFSISLVKLPINIIIWFTDMIPF 98

[Close]

BLAST of Carg13184 vs. NCBI nr
Match: XP_022988826.1 (uncharacterized protein LOC111486053 [Cucurbita maxima])

HSP 1 Score: 113.2 bits (282), Expect = 1.2e-21
Identity = 66/98 (67.35%), Postives = 72/98 (73.47%), Query Frame = 0


Query: 1  MACCRPLGFLIGLPFALLSLSLSFVGSLLFIFLILSCILVGFDPILINVCMVFDDLGRSL 60
          MACCRPLGFLIGLPFALLSLSLS +G+LLFIFL                         S+
Sbjct: 1  MACCRPLGFLIGLPFALLSLSLSCIGALLFIFL-------------------------SI 60

Query: 61 LSCICPCCVCVAILISFSISLVKLPINIIIWFTDMIPF 99
          LSCICPCCVCVAILISFSI+LVKLPI++IIWFTDMIPF
Sbjct: 61 LSCICPCCVCVAILISFSINLVKLPIDVIIWFTDMIPF 73

[Close]

BLAST of Carg13184 vs. NCBI nr
Match: XP_004146276.1 (signaling peptide TAXIMIN 1-like [Cucumis sativus])

HSP 1 Score: 89.7 bits (221), Expect = 1.5e-14
Identity = 53/97 (54.64%), Postives = 63/97 (64.95%), Query Frame = 0


Query: 1  MACCRPLGFLIGLPFALLSLSLSFVGSLLFIFLILSCILVGFDPILINVCMVFDDLGRSL 60
          MACCRPLGFLIGLPFA+LSL LSF+G+LL+IF                          SL
Sbjct: 1  MACCRPLGFLIGLPFAILSLVLSFIGALLWIFW-------------------------SL 60

Query: 61 LSCICPCCVCVAILISFSISLVKLPINIIIWFTDMIP 98
          LSCICPCCVC A+L   SISL+KLPI+++ WF  +IP
Sbjct: 61 LSCICPCCVCFAVLSDLSISLLKLPIDVMDWFVSLIP 72

[Close]

BLAST of Carg13184 vs. NCBI nr
Match: XP_008456209.1 (PREDICTED: uncharacterized protein LOC103496213 [Cucumis melo])

HSP 1 Score: 83.2 bits (204), Expect = 1.4e-12
Identity = 50/93 (53.76%), Postives = 60/93 (64.52%), Query Frame = 0


Query: 5  RPLGFLIGLPFALLSLSLSFVGSLLFIFLILSCILVGFDPILINVCMVFDDLGRSLLSCI 64
          +PLGFLIGLPF+ LSL LSF+G+LL+IF                          SLLSCI
Sbjct: 4  KPLGFLIGLPFSFLSLVLSFIGALLWIFW-------------------------SLLSCI 63

Query: 65 CPCCVCVAILISFSISLVKLPINIIIWFTDMIP 98
          CPCCVC A+L  FSISL+KLPIN++ WF D+IP
Sbjct: 64 CPCCVCFAVLSDFSISLMKLPINVMDWFIDLIP 71

[Close]

BLAST of Carg13184 vs. NCBI nr
Match: KAF9666736.1 (hypothetical protein SADUNF_Sadunf16G0259800 [Salix dunnii])

HSP 1 Score: 79.7 bits (195), Expect = 1.5e-11
Identity = 46/97 (47.42%), Postives = 61/97 (62.89%), Query Frame = 0


Query: 1  MACCRPLGFLIGLPFALLSLSLSFVGSLLFIFLILSCILVGFDPILINVCMVFDDLGRSL 60
          M  CRPLGFLIGLPFAL++L LS +G+++++                           S+
Sbjct: 1  MGDCRPLGFLIGLPFALIALVLSLIGAVVWVI-------------------------GSV 60

Query: 61 LSCICPCCVCVAILISFSISLVKLPINIIIWFTDMIP 98
          LSCICPCCVC A L + ++SLVKLP+ II+WFTD+IP
Sbjct: 61 LSCICPCCVCCAGLANLAVSLVKLPVKIILWFTDLIP 72

[Close]

BLAST of Carg13184 vs. ExPASy Swiss-Prot
Match: Q1G309 (Signaling peptide TAXIMIN 2 OS=Arabidopsis thaliana OX=3702 GN=TAX2 PE=2 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.2e-11
Identity = 41/97 (42.27%), Postives = 57/97 (58.76%), Query Frame = 0


Query: 1  MACCRPLGFLIGLPFALLSLSLSFVGSLLFIFLILSCILVGFDPILINVCMVFDDLGRSL 60
          M  CRPLGFLIGLPFAL++L L+ VG++++I                           ++
Sbjct: 1  MGDCRPLGFLIGLPFALVALVLALVGAVIWII-------------------------GTV 60

Query: 61 LSCICPCCVCVAILISFSISLVKLPINIIIWFTDMIP 98
          LSC+CPCC C A L +F++ L+KLPI ++ WFT  IP
Sbjct: 61 LSCLCPCCFCFAALANFAVDLIKLPIKVLRWFTHSIP 72

[Close]

BLAST of Carg13184 vs. ExPASy Swiss-Prot
Match: O82275 (Signaling peptide TAXIMIN 1 OS=Arabidopsis thaliana OX=3702 GN=TAX1 PE=2 SV=2)

HSP 1 Score: 69.7 bits (169), Expect = 2.1e-11
Identity = 42/94 (44.68%), Postives = 55/94 (58.51%), Query Frame = 0


Query: 4  CRPLGFLIGLPFALLSLSLSFVGSLLFIFLILSCILVGFDPILINVCMVFDDLGRSLLSC 63
          CRPLGFL+GLPFA LSL LS +G +++I        VG                  LLSC
Sbjct: 6  CRPLGFLLGLPFAFLSLLLSIIGVIIWI--------VGL-----------------LLSC 65

Query: 64 ICPCCVCVAILISFSISLVKLPINIIIWFTDMIP 98
          ICPCC+CV +L+  +I L+K PI+++ WF   IP
Sbjct: 66 ICPCCLCVTVLVEIAIGLIKAPIHVMEWFMSKIP 74

[Close]

BLAST of Carg13184 vs. ExPASy TrEMBL
Match: A0A6J1JIC5 (uncharacterized protein LOC111486053 OS=Cucurbita maxima OX=3661 GN=LOC111486053 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 6.0e-22
Identity = 66/98 (67.35%), Postives = 72/98 (73.47%), Query Frame = 0


Query: 1  MACCRPLGFLIGLPFALLSLSLSFVGSLLFIFLILSCILVGFDPILINVCMVFDDLGRSL 60
          MACCRPLGFLIGLPFALLSLSLS +G+LLFIFL                         S+
Sbjct: 1  MACCRPLGFLIGLPFALLSLSLSCIGALLFIFL-------------------------SI 60

Query: 61 LSCICPCCVCVAILISFSISLVKLPINIIIWFTDMIPF 99
          LSCICPCCVCVAILISFSI+LVKLPI++IIWFTDMIPF
Sbjct: 61 LSCICPCCVCVAILISFSINLVKLPIDVIIWFTDMIPF 73

[Close]

BLAST of Carg13184 vs. ExPASy TrEMBL
Match: A0A1S3C2P5 (uncharacterized protein LOC103496213 OS=Cucumis melo OX=3656 GN=LOC103496213 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 6.7e-13
Identity = 50/93 (53.76%), Postives = 60/93 (64.52%), Query Frame = 0


Query: 5  RPLGFLIGLPFALLSLSLSFVGSLLFIFLILSCILVGFDPILINVCMVFDDLGRSLLSCI 64
          +PLGFLIGLPF+ LSL LSF+G+LL+IF                          SLLSCI
Sbjct: 4  KPLGFLIGLPFSFLSLVLSFIGALLWIFW-------------------------SLLSCI 63

Query: 65 CPCCVCVAILISFSISLVKLPINIIIWFTDMIP 98
          CPCCVC A+L  FSISL+KLPIN++ WF D+IP
Sbjct: 64 CPCCVCFAVLSDFSISLMKLPINVMDWFIDLIP 71

[Close]

BLAST of Carg13184 vs. ExPASy TrEMBL
Match: A0A068UBS9 (Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00021283001 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 2.8e-11
Identity = 47/97 (48.45%), Postives = 58/97 (59.79%), Query Frame = 0


Query: 1  MACCRPLGFLIGLPFALLSLSLSFVGSLLFIFLILSCILVGFDPILINVCMVFDDLGRSL 60
          MA CRPLGFLI LPFALLSL LS VG+++++                           S 
Sbjct: 1  MAKCRPLGFLISLPFALLSLILSLVGAVVWVI-------------------------GSF 60

Query: 61 LSCICPCCVCVAILISFSISLVKLPINIIIWFTDMIP 98
          LSCICPCC+C   L++ ++SLVKLP+ II WFTD IP
Sbjct: 61 LSCICPCCICCTGLVNMAVSLVKLPVKIIRWFTDQIP 72

[Close]

BLAST of Carg13184 vs. ExPASy TrEMBL
Match: A0A6P6SCA3 (uncharacterized protein LOC113690180 OS=Coffea arabica OX=13443 GN=LOC113690180 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 2.8e-11
Identity = 47/97 (48.45%), Postives = 58/97 (59.79%), Query Frame = 0


Query: 1  MACCRPLGFLIGLPFALLSLSLSFVGSLLFIFLILSCILVGFDPILINVCMVFDDLGRSL 60
          MA CRPLGFLI LPFALLSL LS VG+++++                           S 
Sbjct: 1  MAKCRPLGFLISLPFALLSLILSLVGAVVWVI-------------------------GSF 60

Query: 61 LSCICPCCVCVAILISFSISLVKLPINIIIWFTDMIP 98
          LSCICPCC+C   L++ ++SLVKLP+ II WFTD IP
Sbjct: 61 LSCICPCCICCTGLVNMAVSLVKLPVKIIRWFTDQIP 72

[Close]

BLAST of Carg13184 vs. ExPASy TrEMBL
Match: A0A6N2ND04 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS497759 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 2.8e-11
Identity = 42/94 (44.68%), Postives = 60/94 (63.83%), Query Frame = 0


Query: 4  CRPLGFLIGLPFALLSLSLSFVGSLLFIFLILSCILVGFDPILINVCMVFDDLGRSLLSC 63
          CRPLGFLIGLPFAL+++ LS +G+++++                           S+LSC
Sbjct: 3  CRPLGFLIGLPFALIAVVLSLIGAVVWVI-------------------------GSVLSC 62

Query: 64 ICPCCVCVAILISFSISLVKLPINIIIWFTDMIP 98
          ICPCC+C A L + ++SLVKLP+ +I+WFTD+IP
Sbjct: 63 ICPCCICCAGLANLAVSLVKLPVKVILWFTDLIP 71

[Close]

BLAST of Carg13184 vs. TAIR 10
Match: AT2G20562.1 (unknown protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G31090.1); Has 70 Blast hits to 70 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 70.5 bits (171), Expect = 8.6e-13
Identity = 41/97 (42.27%), Postives = 57/97 (58.76%), Query Frame = 0


Query: 1  MACCRPLGFLIGLPFALLSLSLSFVGSLLFIFLILSCILVGFDPILINVCMVFDDLGRSL 60
          M  CRPLGFLIGLPFAL++L L+ VG++++I                           ++
Sbjct: 1  MGDCRPLGFLIGLPFALVALVLALVGAVIWII-------------------------GTV 60

Query: 61 LSCICPCCVCVAILISFSISLVKLPINIIIWFTDMIP 98
          LSC+CPCC C A L +F++ L+KLPI ++ WFT  IP
Sbjct: 61 LSCLCPCCFCFAALANFAVDLIKLPIKVLRWFTHSIP 72

[Close]

BLAST of Carg13184 vs. TAIR 10
Match: AT2G31090.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G20562.1); Has 70 Blast hits to 70 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 69.7 bits (169), Expect = 1.5e-12
Identity = 42/94 (44.68%), Postives = 55/94 (58.51%), Query Frame = 0


Query: 4  CRPLGFLIGLPFALLSLSLSFVGSLLFIFLILSCILVGFDPILINVCMVFDDLGRSLLSC 63
          CRPLGFL+GLPFA LSL LS +G +++I        VG                  LLSC
Sbjct: 6  CRPLGFLLGLPFAFLSLLLSIIGVIIWI--------VGL-----------------LLSC 65

Query: 64 ICPCCVCVAILISFSISLVKLPINIIIWFTDMIP 98
          ICPCC+CV +L+  +I L+K PI+++ WF   IP
Sbjct: 66 ICPCCLCVTVLVEIAIGLIKAPIHVMEWFMSKIP 74

The following BLAST results are available for this feature:

BLAST of Carg13184 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7031045.1	9.8e-43	100.00	hypothetical protein SDJN02_05084, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022988826.1	1.2e-21	67.35	uncharacterized protein LOC111486053 [Cucurbita maxima]	[more]
XP_004146276.1	1.5e-14	54.64	signaling peptide TAXIMIN 1-like [Cucumis sativus]	[more]
XP_008456209.1	1.4e-12	53.76	PREDICTED: uncharacterized protein LOC103496213 [Cucumis melo]	[more]
KAF9666736.1	1.5e-11	47.42	hypothetical protein SADUNF_Sadunf16G0259800 [Salix dunnii]	[more]

BLAST of Carg13184 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q1G309	1.2e-11	42.27	Signaling peptide TAXIMIN 2 OS=Arabidopsis thaliana OX=3702 GN=TAX2 PE=2 SV=1	[more]
O82275	2.1e-11	44.68	Signaling peptide TAXIMIN 1 OS=Arabidopsis thaliana OX=3702 GN=TAX1 PE=2 SV=2	[more]

BLAST of Carg13184 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JIC5	6.0e-22	67.35	uncharacterized protein LOC111486053 OS=Cucurbita maxima OX=3661 GN=LOC111486053...	[more]
A0A1S3C2P5	6.7e-13	53.76	uncharacterized protein LOC103496213 OS=Cucumis melo OX=3656 GN=LOC103496213 PE=...	[more]
A0A068UBS9	2.8e-11	48.45	Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00021283001 PE=4 ...	[more]
A0A6P6SCA3	2.8e-11	48.45	uncharacterized protein LOC113690180 OS=Coffea arabica OX=13443 GN=LOC113690180 ...	[more]
A0A6N2ND04	2.8e-11	44.68	Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS497759 PE=4 SV=...	[more]

BLAST of Carg13184 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G20562.1	8.6e-13	42.27	unknown protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana prot...	[more]
AT2G31090.1	1.5e-12	44.68	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33834:SF10	SUBFAMILY NOT NAMED	coord: 59..97
None	No IPR available	PANTHER	PTHR33834	SIGNALING PEPTIDE TAXIMIN 2	coord: 59..97 coord: 1..39
None	No IPR available	PANTHER	PTHR33834:SF10	SUBFAMILY NOT NAMED	coord: 1..39

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg13184-RA	Carg13184-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane