Carg13183 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg13183
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr04: 2941969 .. 2943154 (+)
RNA-Seq ExpressionCarg13183
SyntenyCarg13183
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACGCAAATGTTGAAGCTCGGCCTTCAGTTTTCATGGCGACTCGGGGAGATTTTACGAGGGCAGCCGGAAAGCTCTGTAAACGACTTCTAGGGTTCGTTTTCTAGATAGATCCGTACTGGTTATCAATTGGTGAGTTCCTTTCCCTAATGCTTTGTGTTAATGTTTGAATGCCCCCGTATTTGTCTCGTTGGAATGATAATTTGATGAAGTTGAGGTTTCTTTGGGTTTTGCTCGACCGAATAAGTTTAGGACGTCGTTTGAGTTGTCGATTCTATTTGTGATTTTTGTCGTGCGATGTCCTCGGGATCTGTTTCTTCGTCATTGAAGAAGAGTGGTAATCGATCGAGAAAAGAGTGTAGTCATCGAGGCTCTCTTTTCCTGTAGATTCTCCCTTGAGGTTTAATTCTGAATTTCTTTCTTTTTTATTTTGGAAATCTTTCTCCTAGACTCATTGAAGGAGGAAGATATACAAATATGGTGCAGAGAAATCAAAATGGGTATTAATCGATCTGGTTAAGAGTATTGATGATGCTGAATGGTTGAAATTATTAATACTCTTCATATGTTTGTTAGCTTTAGCTTCTTAAGATGGTTACATGTATGTAATTGTTAAAACTTGAATGGCCTTTATTTTTAATAAACTCGTACAGTTTATCCTGCTTCAGCTTCTATAGTTGTAATTTTGTTATTTTTGAGGACTAGGAGTTGCTCACAAAACATGGGATTTGGTGATTGGAAAAGTATTTTTTCGGTGTAACTGCTTGTTGGACTGGTTTATATCAGCATAATCCTGTTAACTTGTGGTATCTGTGACCCAATGAGTGATTGCTGTGTAAACTTGATCCTTAGTATCTGTTATGTTGAACTTGCATCTGATTTGGGCATGAAATGGATAAGTAACGCCACTAATTTTCTTACTCTAAATTAGTGACGTTACAAATGGTATCAAAGTTAGACATTGGGTGGTGTGATAGTGAGAATGTTGAGTTTCGAAGGCGGGTAGACACTGGGCAGTGTGCCAACGAGGACGCTGGGCCGAAGGAGGTGGATTGTGAGATCCCACATCGATTGGAGAGAGGAACGAGTGTCAGTAAGGACGCTATATCTCGAAGGAGGATGTACTGTGAGATCCCACATCGATTGGAGAGGGAAACGAGTGCTAGTGAGTACGCTGGATCTTGA

mRNA sequence

ATGAACGCAAATGTTGAAGCTCGGCCTTCAGTTTTCATGGCGACTCGGGGAGATTTTACGAGGGCAGCCGGAAAGCTCTGTAAACGACTTCTAGGTGAGAATGTTGAGTTTCGAAGGCGGGTAGACACTGGGCAGTGTGCCAACGAGGACGCTGGGCCGAAGGAGGTGGATTGTGAGATCCCACATCGATTGGAGAGAGGAACGAGTGTCAGTAAGGACGCTATATCTCGAAGGAGGATGTACTGTGAGATCCCACATCGATTGGAGAGGGAAACGAGTGCTAGTGAGTACGCTGGATCTTGA

Coding sequence (CDS)

ATGAACGCAAATGTTGAAGCTCGGCCTTCAGTTTTCATGGCGACTCGGGGAGATTTTACGAGGGCAGCCGGAAAGCTCTGTAAACGACTTCTAGGTGAGAATGTTGAGTTTCGAAGGCGGGTAGACACTGGGCAGTGTGCCAACGAGGACGCTGGGCCGAAGGAGGTGGATTGTGAGATCCCACATCGATTGGAGAGAGGAACGAGTGTCAGTAAGGACGCTATATCTCGAAGGAGGATGTACTGTGAGATCCCACATCGATTGGAGAGGGAAACGAGTGCTAGTGAGTACGCTGGATCTTGA

Protein sequence

MNANVEARPSVFMATRGDFTRAAGKLCKRLLGENVEFRRRVDTGQCANEDAGPKEVDCEIPHRLERGTSVSKDAISRRRMYCEIPHRLERETSASEYAGS
Homology
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BLAST of Carg13183 vs. NCBI nr
Match: KAG7031046.1 (hypothetical protein SDJN02_05085, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 205.7 bits (522), Expect = 1.9e-49
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0 

Query: 1   MNANVEARPSVFMATRGDFTRAAGKLCKRLLGENVEFRRRVDTGQCANEDAGPKEVDCEI 60
           MNANVEARPSVFMATRGDFTRAAGKLCKRLLGENVEFRRRVDTGQCANEDAGPKEVDCEI
Sbjct: 1   MNANVEARPSVFMATRGDFTRAAGKLCKRLLGENVEFRRRVDTGQCANEDAGPKEVDCEI 60

Query: 61  PHRLERGTSVSKDAISRRRMYCEIPHRLERETSASEYAGS 101
           PHRLERGTSVSKDAISRRRMYCEIPHRLERETSASEYAGS
Sbjct: 61  PHRLERGTSVSKDAISRRRMYCEIPHRLERETSASEYAGS 100

The following BLAST results are available for this feature:
BLAST of Carg13183 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7031046.11.9e-49100.00hypothetical protein SDJN02_05085, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg13183 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg13183 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg13183 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 97..100

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg13183-RACarg13183-RAmRNA