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Carg13162 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGTATCTTGTTGGATCCGGCCCAATTTCGAGCCCTAGAGAAAGTGGAATTCCTTCTTGAAGAGCAAGCAAAGGCAGCAACTAAAGTGACCAAGTTCCATTTCCATTTCCATTTCAGCGGAGAGATTCAGAGAAAGAAACTGAAGGAGACGAAGATAGCCATGGATCCGAAGCTAACTGAGGTCTCGCAGAACTTCGAGCGCTTCAAAGCTGCTCTTGTCAGGCACGATTATGATTCTTGTAACAATCTCCTCTGTCAGCTCAAGGTATCGATCTGATTCTAGAACCCTAATGTTTCTTCCAATTACTCATCTGTTCACTGCAGTTTCAGCGTGTTTTCTTTTGTTCTTGAGGAGATTGGTTTTTAATGATGCCGTTCAAGTTTCTTAAATCTTTTTTTGTTTTTCTTTTTGCAGGTTTTTTTGACTGGATTCAGAAGTCTTCCGCCATTGTTTGAAAATACGCCCAATGCTGTCCATGAACTGACGGTGGCTAGTAAGAATGTCTCGCCATACTATATTTCCTAGTTCCGCTGCTCTTATTTGCTGGACTATATTTTTTCCATATGAATAATTTGCTGTCGCTTGGATCTTGCAATACTCAACTGAAGAGAAGATTATAATATATGGTTTATGTATCTTCATAGTAATAGATAGAACTTATATTTGTGTGGGACTTGGTATATTCACTTTTGTGATTAGTGCTGTTAAGCTACCACCCGAACTAGAAGCTTAAGCCATGAGATTGAGTAAATTTGACTCCTTGATTCTACAAAGGTAAGATTATGATGAGGCTTTGAAAGCATTTCCCATCTTAGAAGTTAGATCACCAATACCATAGTTGATGCAAATTTGGAAAAGATTCGAATGAGCTTTTGAAGTAATTTTACTCAGAAGTACAAAATGACACACGAATGTCATAAGTTGATAAACTATCTAATAGAAGTTGGAGAAAGACGGAAACTACTTGGACATGAATAAATAATATACTCTCTGGATCTTTGAATATTCTGATGTTGAGTTTTCTATACGAAAATGTTTATTATCTATAGGGGACTTGGGTTTTTTCTCCTTTCCTGCACAGTCGTTTTCTAAATTGAGTTCTTATACGATTTTTGTGTTTATTTGGTGTCTTCAGGGGATATATATGAGCACGCTGTGTTGCTTAGTGTGAAGATTGAGGATCAAGAGGCATTTGAAAGAGATTTCTTCCAATTGAAGCCTTACTACACTGATGCTCGGTGTGTTTCTCTTTCTAAATTAAAGTGAAATTTGAATTCCTAAATCCTGTCCAAAATGATTAAGTTGCTTTATTATTATGATATATTGCTTGTTTATCTCAGACGGGGAAGAAAATATAAAAATGTTTAGTTTTTTCCTTTTTCAGTTGGTGCCTTTGGTTTGTTTTTCTTCCTGAGATTCTTGGAAAAGTTATGCTAATTGCCAAGATTTAAATGATTTATACTCCTTTGCGAGCCTGGGGAATGGTGTAGTGAGATAAAGAGCAGAAAAGTATAGATATAAGTGGAGTTCTATTGAACAACTTGATTCTTTGTTAATTTGAAGTGAAATTTCATCAAAGACTAAAGCCACGTATAGATATTATTTGCAAATATAATTTTCTTAGTTGGTCACTATTAGGTAGTTTACATCATACTATTATCTTTCCTTCTTTCATGTAAATGACTTAATCTAATTAAACTGAACTGCTTTGGCGAGAAAATCATCTGACAATGAACTGCAGCAGAGTAACAAATGGGTCCTAACTTATCAGGAAAGCATATTCTGAGTTCTCTTGAGGTTCAAAACTGATGTATCTGATTTTAGCCCGAGCTTCCTGTGTTTTAATCTAGCATTTTACGAGATTGCCGCATTGAGATTAACTCGATGTTATCTTGTGTTTGAACTTCTGGGTACAATTTTTTCTCATGAGAATTTTTTTTTTTGGATCAGTAACCTCCTTCCACCATCCCCTCAGGAGTATCCAATCTTGGGTCTCAACCTTTTGAGGCTTCTTGTGCAGAATAGAATTGCAGAATTCCATACTGAACTTGAACTTCTTTCCACATCTGCTTTGGAGAGCCCATGCATTAAACATGCTGTGGAGCTGGAACAATCTTTCATGGAAGGTGCTTACAACCGTGTGTTGAGTGCTCGACAGACTGTGCCACACGAAACTTTTGGTTATTTCATGGACCTCCTTGCAAAGACTGTAAGGTAACTCATCTAAATAAGGTCTCTAACTAATATAATGATAGATGATAAATCCCACGTCCTTCCAAGTGTTTGCCAAATTTTCTCTCTCGGGGTCGCTGACAAGTAGCTGTTCCATTTCATTCTTAATCTTTTTTTTTTTTTTTGAGACAACATACATTTCATTCATAATTTATGTCTTTCCTGTCACTTCCAGAGATGAAATAGCTGGTTGCAGTGAGAAGGCATATGATTATCTTTCTATAAACGATGCACGCCAAATGCTGCTGTTTTCCTCTGACAAAGAACTTCTGGAATATGTCAAGGAGGTAAGCTCTGTTTGATGCATTTAATCCCTCGATAATCTGCATTCTCACTAGCAGGTTTTAGATAGATGAAAGTTGTCTTTTCGATGAATACTTCTCTCGACTAACCTCTGGCATGAAGGTTATGAGTACTAACTAACAGAGTTCCCACCAATTATTTCATGTCTTATTCTTCACATGTTTTCACAATGCTCCTGTTGATGATGATCTGTTGTTTCGATGCAGGAGCATCCCGAGTGGGAGATAACGAATGGCGTTGTATATTTCCAGAAGGCGAAAGAATCTGCACCTTGCAAGGAAATACCTTCTCTTCAACTCATCAACCAAACGCTCAGTTACGCAAGGGAGTTGGAGCGGATTGTATGAACGAACCAAGCTAGCAGGTTTCAACCATTGCTATCTGCTGCTTTTCAACATGCCAATGTTGATAGTTATCCCTCACCCTCTTATGATCTTTATGGGATTTTTCCATACGAAATTGTTATTTTTAGTGACATTAAGTCGGATTTTTGTCGATTTATCTTGGCATTTACATTCTCGTGAAACTACCACTACTATATTTAAAAAAGCTATTTATTAAAATAATGTTATTAAAAAAGGAGCTATTTATTAAAACCAAATGGACGGAGGAATTAAATAT ATGGGTATCTTGTTGGATCCGGCCCAATTTCGAGCCCTAGAGAAAGTGGAATTCCTTCTTGAAGAGCAAGCAAAGGCAGCAACTAAAGTGACCAAGTTCCATTTCCATTTCCATTTCAGCGGAGAGATTCAGAGAAAGAAACTGAAGGAGACGAAGATAGCCATGGATCCGAAGCTAACTGAGGTCTCGCAGAACTTCGAGCGCTTCAAAGCTGCTCTTGTCAGGCACGATTATGATTCTTGTAACAATCTCCTCTGTCAGCTCAAGGTTTTTTTGACTGGATTCAGAAGTCTTCCGCCATTGTTTGAAAATACGCCCAATGCTGTCCATGAACTGACGGTGGCTAGGGATATATATGAGCACGCTGTGTTGCTTAGTGTGAAGATTGAGGATCAAGAGGCATTTGAAAGAGATTTCTTCCAATTGAAGCCTTACTACACTGATGCTCGTAACCTCCTTCCACCATCCCCTCAGGAGTATCCAATCTTGGGTCTCAACCTTTTGAGGCTTCTTGTGCAGAATAGAATTGCAGAATTCCATACTGAACTTGAACTTCTTTCCACATCTGCTTTGGAGAGCCCATGCATTAAACATGCTGTGGAGCTGGAACAATCTTTCATGGAAGGTGCTTACAACCGTGTGTTGAGTGCTCGACAGACTGTGCCACACGAAACTTTTGGTTATTTCATGGACCTCCTTGCAAAGACTGTAAGAGATGAAATAGCTGGTTGCAGTGAGAAGGCATATGATTATCTTTCTATAAACGATGCACGCCAAATGCTGCTGTTTTCCTCTGACAAAGAACTTCTGGAATATGTCAAGGAGGAGCATCCCGAGTGGGAGATAACGAATGGCGTTGTATATTTCCAGAAGGCGAAAGAATCTGCACCTTGCAAGGAAATACCTTCTCTTCAACTCATCAACCAAACGCTCAGTTACGCAAGGGAGTTGGAGCGGATTGTATGAACGAACCAAGCTAGCAGGTTTCAACCATTGCTATCTGCTGCTTTTCAACATGCCAATGTTGATAGTTATCCCTCACCCTCTTATGATCTTTATGGGATTTTTCCATACGAAATTGTTATTTTTAGTGACATTAAGTCGGATTTTTGTCGATTTATCTTGGCATTTACATTCTCGTGAAACTACCACTACTATATTTAAAAAAGCTATTTATTAAAATAATGTTATTAAAAAAGGAGCTATTTATTAAAACCAAATGGACGGAGGAATTAAATAT ATGGGTATCTTGTTGGATCCGGCCCAATTTCGAGCCCTAGAGAAAGTGGAATTCCTTCTTGAAGAGCAAGCAAAGGCAGCAACTAAAGTGACCAAGTTCCATTTCCATTTCCATTTCAGCGGAGAGATTCAGAGAAAGAAACTGAAGGAGACGAAGATAGCCATGGATCCGAAGCTAACTGAGGTCTCGCAGAACTTCGAGCGCTTCAAAGCTGCTCTTGTCAGGCACGATTATGATTCTTGTAACAATCTCCTCTGTCAGCTCAAGGTTTTTTTGACTGGATTCAGAAGTCTTCCGCCATTGTTTGAAAATACGCCCAATGCTGTCCATGAACTGACGGTGGCTAGGGATATATATGAGCACGCTGTGTTGCTTAGTGTGAAGATTGAGGATCAAGAGGCATTTGAAAGAGATTTCTTCCAATTGAAGCCTTACTACACTGATGCTCGTAACCTCCTTCCACCATCCCCTCAGGAGTATCCAATCTTGGGTCTCAACCTTTTGAGGCTTCTTGTGCAGAATAGAATTGCAGAATTCCATACTGAACTTGAACTTCTTTCCACATCTGCTTTGGAGAGCCCATGCATTAAACATGCTGTGGAGCTGGAACAATCTTTCATGGAAGGTGCTTACAACCGTGTGTTGAGTGCTCGACAGACTGTGCCACACGAAACTTTTGGTTATTTCATGGACCTCCTTGCAAAGACTGTAAGAGATGAAATAGCTGGTTGCAGTGAGAAGGCATATGATTATCTTTCTATAAACGATGCACGCCAAATGCTGCTGTTTTCCTCTGACAAAGAACTTCTGGAATATGTCAAGGAGGAGCATCCCGAGTGGGAGATAACGAATGGCGTTGTATATTTCCAGAAGGCGAAAGAATCTGCACCTTGCAAGGAAATACCTTCTCTTCAACTCATCAACCAAACGCTCAGTTACGCAAGGGAGTTGGAGCGGATTGTATGA MGILLDPAQFRALEKVEFLLEEQAKAATKVTKFHFHFHFSGEIQRKKLKETKIAMDPKLTEVSQNFERFKAALVRHDYDSCNNLLCQLKVFLTGFRSLPPLFENTPNAVHELTVARDIYEHAVLLSVKIEDQEAFERDFFQLKPYYTDARNLLPPSPQEYPILGLNLLRLLVQNRIAEFHTELELLSTSALESPCIKHAVELEQSFMEGAYNRVLSARQTVPHETFGYFMDLLAKTVRDEIAGCSEKAYDYLSINDARQMLLFSSDKELLEYVKEEHPEWEITNGVVYFQKAKESAPCKEIPSLQLINQTLSYARELERIV Homology
BLAST of Carg13162 vs. NCBI nr
Match: KAG7031067.1 (26S proteasome non-ATPase regulatory subunit 8-like A, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 639.8 bits (1649), Expect = 1.3e-179 Identity = 321/321 (100.00%), Postives = 321/321 (100.00%), Query Frame = 0
BLAST of Carg13162 vs. NCBI nr
Match: KAG6600406.1 (26S proteasome non-ATPase regulatory subunit 8-like A, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 638.3 bits (1645), Expect = 3.6e-179 Identity = 320/321 (99.69%), Postives = 320/321 (99.69%), Query Frame = 0
BLAST of Carg13162 vs. NCBI nr
Match: TYK16516.1 (26S proteasome non-ATPase regulatory subunit 8-like protein A [Cucumis melo var. makuwa]) HSP 1 Score: 567.0 bits (1460), Expect = 1.0e-157 Identity = 290/321 (90.34%), Postives = 306/321 (95.33%), Query Frame = 0
BLAST of Carg13162 vs. NCBI nr
Match: KAA0044956.1 (26S proteasome non-ATPase regulatory subunit 8-like protein A [Cucumis melo var. makuwa]) HSP 1 Score: 564.3 bits (1453), Expect = 6.7e-157 Identity = 288/321 (89.72%), Postives = 305/321 (95.02%), Query Frame = 0
BLAST of Carg13162 vs. NCBI nr
Match: XP_023515731.1 (26S proteasome non-ATPase regulatory subunit 8 homolog A-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 534.6 bits (1376), Expect = 5.7e-148 Identity = 266/267 (99.63%), Postives = 267/267 (100.00%), Query Frame = 0
BLAST of Carg13162 vs. ExPASy Swiss-Prot
Match: Q9SGW3 (26S proteasome non-ATPase regulatory subunit 8 homolog A OS=Arabidopsis thaliana OX=3702 GN=RPN12A PE=1 SV=1) HSP 1 Score: 441.4 bits (1134), Expect = 8.6e-123 Identity = 219/267 (82.02%), Postives = 239/267 (89.51%), Query Frame = 0
BLAST of Carg13162 vs. ExPASy Swiss-Prot
Match: Q9FHY0 (Putative 26S proteasome non-ATPase regulatory subunit 8 homolog B OS=Arabidopsis thaliana OX=3702 GN=RPN12B PE=5 SV=2) HSP 1 Score: 313.5 bits (802), Expect = 2.7e-84 Identity = 168/267 (62.92%), Postives = 198/267 (74.16%), Query Frame = 0
BLAST of Carg13162 vs. ExPASy Swiss-Prot
Match: P02889 (Probable 26S proteasome non-ATPase regulatory subunit 8 OS=Dictyostelium discoideum OX=44689 GN=psmD8-1 PE=2 SV=2) HSP 1 Score: 198.0 bits (502), Expect = 1.7e-49 Identity = 106/264 (40.15%), Postives = 167/264 (63.26%), Query Frame = 0
BLAST of Carg13162 vs. ExPASy Swiss-Prot
Match: Q9CX56 (26S proteasome non-ATPase regulatory subunit 8 OS=Mus musculus OX=10090 GN=Psmd8 PE=1 SV=2) HSP 1 Score: 171.0 bits (432), Expect = 2.2e-41 Identity = 101/243 (41.56%), Postives = 141/243 (58.02%), Query Frame = 0
BLAST of Carg13162 vs. ExPASy Swiss-Prot
Match: Q5RE15 (26S proteasome non-ATPase regulatory subunit 8 (Fragment) OS=Pongo abelii OX=9601 GN=PSMD8 PE=2 SV=2) HSP 1 Score: 170.2 bits (430), Expect = 3.7e-41 Identity = 100/243 (41.15%), Postives = 141/243 (58.02%), Query Frame = 0
BLAST of Carg13162 vs. ExPASy TrEMBL
Match: A0A5D3D1F4 (26S proteasome non-ATPase regulatory subunit 8-like protein A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G003260 PE=3 SV=1) HSP 1 Score: 567.0 bits (1460), Expect = 5.0e-158 Identity = 290/321 (90.34%), Postives = 306/321 (95.33%), Query Frame = 0
BLAST of Carg13162 vs. ExPASy TrEMBL
Match: A0A5A7TS32 (26S proteasome non-ATPase regulatory subunit 8-like protein A OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G002620 PE=3 SV=1) HSP 1 Score: 564.3 bits (1453), Expect = 3.2e-157 Identity = 288/321 (89.72%), Postives = 305/321 (95.02%), Query Frame = 0
BLAST of Carg13162 vs. ExPASy TrEMBL
Match: A0A6J1J298 (26S proteasome non-ATPase regulatory subunit 8 homolog A-like OS=Cucurbita maxima OX=3661 GN=LOC111481169 PE=3 SV=1) HSP 1 Score: 529.6 bits (1363), Expect = 8.9e-147 Identity = 264/267 (98.88%), Postives = 266/267 (99.63%), Query Frame = 0
BLAST of Carg13162 vs. ExPASy TrEMBL
Match: A0A6J1FQM9 (26S proteasome non-ATPase regulatory subunit 8 homolog A-like OS=Cucurbita moschata OX=3662 GN=LOC111447901 PE=3 SV=1) HSP 1 Score: 528.1 bits (1359), Expect = 2.6e-146 Identity = 264/267 (98.88%), Postives = 265/267 (99.25%), Query Frame = 0
BLAST of Carg13162 vs. ExPASy TrEMBL
Match: A0A1S3BSK8 (26S proteasome non-ATPase regulatory subunit 8 homolog A OS=Cucumis melo OX=3656 GN=LOC103493070 PE=3 SV=1) HSP 1 Score: 519.6 bits (1337), Expect = 9.2e-144 Identity = 256/267 (95.88%), Postives = 265/267 (99.25%), Query Frame = 0
BLAST of Carg13162 vs. TAIR 10
Match: AT1G64520.1 (regulatory particle non-ATPase 12A ) HSP 1 Score: 441.4 bits (1134), Expect = 6.1e-124 Identity = 219/267 (82.02%), Postives = 239/267 (89.51%), Query Frame = 0
BLAST of Carg13162 vs. TAIR 10
Match: AT5G42040.1 (regulatory particle non-ATPase 12B ) HSP 1 Score: 313.5 bits (802), Expect = 1.9e-85 Identity = 168/267 (62.92%), Postives = 198/267 (74.16%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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