Carg13148 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg13148
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	NDR1/HIN1-like protein 12
Location	Carg_Chr04: 3164505 .. 3165107 (-)
RNA-Seq Expression	Carg13148
Synteny	Carg13148

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCCCCGAAACTGATCTCCAACGCAAAGCGCCGCACTCATCCGCTCATTTGGTTCGCTGCCGTTCTCTGTACTCTGGTTTCGATCGCCGTCATAATCGCCGGTGTCGGCGTCTTCATTGGCTACCTAGTGATCCACCCTAGGATTCCGACGATCAGTGTCATCGACGCTCATCTCGATAACTTCCAGAACGACATCGCCGGCCGCCTCGAGGTTCATTTAACGATCCTCGTCGAGGCGGGGAATGATAACGCGAAAGCGCATGCGAGTTTCTCCGATACGAGTTTGTTCCTGAGTTTTCTAGGGCTAAACATCGCGGAGCTTGTAGCCGATCCATTCGATGTGAGGAAGAACAGCTCTGTCCAGTTCCATTACGCCGTGAATTCGATTATGATTCCTTTGAATCCAGAGCAGATGGAGGAAGTCGATTTCGCGTTGAAGACGGATCTGATCCAGTTCGATTTGAACGGGAACACGAGAGTTCAATGGCGAGTTGGATTGTTTGGATCCGTGAAATTCGTATGCCAAATTCATTGCGGGCTTAAATTTCATCATTCCAATGGAACGTACTTGATTTCGCCTTGTAGTTCTCGAGCGAAATGA

mRNA sequence

ATGCCCCCGAAACTGATCTCCAACGCAAAGCGCCGCACTCATCCGCTCATTTGGTTCGCTGCCGTTCTCTGTACTCTGGTTTCGATCGCCGTCATAATCGCCGGTGTCGGCGTCTTCATTGGCTACCTAGTGATCCACCCTAGGATTCCGACGATCAGTGTCATCGACGCTCATCTCGATAACTTCCAGAACGACATCGCCGGCCGCCTCGAGGTTCATTTAACGATCCTCGTCGAGGCGGGGAATGATAACGCGAAAGCGCATGCGAGTTTCTCCGATACGAGTTTGTTCCTGAGTTTTCTAGGGCTAAACATCGCGGAGCTTGTAGCCGATCCATTCGATGTGAGGAAGAACAGCTCTGTCCAGTTCCATTACGCCGTGAATTCGATTATGATTCCTTTGAATCCAGAGCAGATGGAGGAAGTCGATTTCGCGTTGAAGACGGATCTGATCCAGTTCGATTTGAACGGGAACACGAGAGTTCAATGGCGAGTTGGATTGTTTGGATCCGTGAAATTCGTATGCCAAATTCATTGCGGGCTTAAATTTCATCATTCCAATGGAACGTACTTGATTTCGCCTTGTAGTTCTCGAGCGAAATGA

Coding sequence (CDS)

ATGCCCCCGAAACTGATCTCCAACGCAAAGCGCCGCACTCATCCGCTCATTTGGTTCGCTGCCGTTCTCTGTACTCTGGTTTCGATCGCCGTCATAATCGCCGGTGTCGGCGTCTTCATTGGCTACCTAGTGATCCACCCTAGGATTCCGACGATCAGTGTCATCGACGCTCATCTCGATAACTTCCAGAACGACATCGCCGGCCGCCTCGAGGTTCATTTAACGATCCTCGTCGAGGCGGGGAATGATAACGCGAAAGCGCATGCGAGTTTCTCCGATACGAGTTTGTTCCTGAGTTTTCTAGGGCTAAACATCGCGGAGCTTGTAGCCGATCCATTCGATGTGAGGAAGAACAGCTCTGTCCAGTTCCATTACGCCGTGAATTCGATTATGATTCCTTTGAATCCAGAGCAGATGGAGGAAGTCGATTTCGCGTTGAAGACGGATCTGATCCAGTTCGATTTGAACGGGAACACGAGAGTTCAATGGCGAGTTGGATTGTTTGGATCCGTGAAATTCGTATGCCAAATTCATTGCGGGCTTAAATTTCATCATTCCAATGGAACGTACTTGATTTCGCCTTGTAGTTCTCGAGCGAAATGA

Protein sequence

MPPKLISNAKRRTHPLIWFAAVLCTLVSIAVIIAGVGVFIGYLVIHPRIPTISVIDAHLDNFQNDIAGRLEVHLTILVEAGNDNAKAHASFSDTSLFLSFLGLNIAELVADPFDVRKNSSVQFHYAVNSIMIPLNPEQMEEVDFALKTDLIQFDLNGNTRVQWRVGLFGSVKFVCQIHCGLKFHHSNGTYLISPCSSRAK

Homology

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BLAST of Carg13148 vs. NCBI nr
Match: KAG7031080.1 (hypothetical protein SDJN02_05119, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 404.4 bits (1038), Expect = 5.5e-109
Identity = 200/200 (100.00%), Postives = 200/200 (100.00%), Query Frame = 0


Query: 1   MPPKLISNAKRRTHPLIWFAAVLCTLVSIAVIIAGVGVFIGYLVIHPRIPTISVIDAHLD 60
           MPPKLISNAKRRTHPLIWFAAVLCTLVSIAVIIAGVGVFIGYLVIHPRIPTISVIDAHLD
Sbjct: 1   MPPKLISNAKRRTHPLIWFAAVLCTLVSIAVIIAGVGVFIGYLVIHPRIPTISVIDAHLD 60

Query: 61  NFQNDIAGRLEVHLTILVEAGNDNAKAHASFSDTSLFLSFLGLNIAELVADPFDVRKNSS 120
           NFQNDIAGRLEVHLTILVEAGNDNAKAHASFSDTSLFLSFLGLNIAELVADPFDVRKNSS
Sbjct: 61  NFQNDIAGRLEVHLTILVEAGNDNAKAHASFSDTSLFLSFLGLNIAELVADPFDVRKNSS 120

Query: 121 VQFHYAVNSIMIPLNPEQMEEVDFALKTDLIQFDLNGNTRVQWRVGLFGSVKFVCQIHCG 180
           VQFHYAVNSIMIPLNPEQMEEVDFALKTDLIQFDLNGNTRVQWRVGLFGSVKFVCQIHCG
Sbjct: 121 VQFHYAVNSIMIPLNPEQMEEVDFALKTDLIQFDLNGNTRVQWRVGLFGSVKFVCQIHCG 180

Query: 181 LKFHHSNGTYLISPCSSRAK 201
           LKFHHSNGTYLISPCSSRAK
Sbjct: 181 LKFHHSNGTYLISPCSSRAK 200

[Close]

BLAST of Carg13148 vs. NCBI nr
Match: KAG6600429.1 (hypothetical protein SDJN03_05662, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 397.9 bits (1021), Expect = 5.2e-107
Identity = 198/200 (99.00%), Postives = 198/200 (99.00%), Query Frame = 0


Query: 1   MPPKLISNAKRRTHPLIWFAAVLCTLVSIAVIIAGVGVFIGYLVIHPRIPTISVIDAHLD 60
           MPPKLISNAKRRTHPLIWFAAVLCTLVSIAVIIAGVGVFIGYLVIHPRIPTISVIDAHLD
Sbjct: 1   MPPKLISNAKRRTHPLIWFAAVLCTLVSIAVIIAGVGVFIGYLVIHPRIPTISVIDAHLD 60

Query: 61  NFQNDIAGRLEVHLTILVEAGNDNAKAHASFSDTSLFLSFLGLNIAELVADPFDVRKNSS 120
           NFQNDIAGRLEVHLTILVEA NDNAKAHASFSDTSLFLSFLGLNIAELVADPFDVRKNSS
Sbjct: 61  NFQNDIAGRLEVHLTILVEAENDNAKAHASFSDTSLFLSFLGLNIAELVADPFDVRKNSS 120

Query: 121 VQFHYAVNSIMIPLNPEQMEEVDFALKTDLIQFDLNGNTRVQWRVGLFGSVKFVCQIHCG 180
           VQF YAVNSIMIPLNPEQMEEVDFALKTDLIQFDLNGNTRVQWRVGLFGSVKFVCQIHCG
Sbjct: 121 VQFDYAVNSIMIPLNPEQMEEVDFALKTDLIQFDLNGNTRVQWRVGLFGSVKFVCQIHCG 180

Query: 181 LKFHHSNGTYLISPCSSRAK 201
           LKFHHSNGTYLISPCSSRAK
Sbjct: 181 LKFHHSNGTYLISPCSSRAK 200

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BLAST of Carg13148 vs. NCBI nr
Match: XP_023526921.1 (uncharacterized protein LOC111790256 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 375.9 bits (964), Expect = 2.1e-100
Identity = 187/200 (93.50%), Postives = 191/200 (95.50%), Query Frame = 0


Query: 1   MPPKLISNAKRRTHPLIWFAAVLCTLVSIAVIIAGVGVFIGYLVIHPRIPTISVIDAHLD 60
           MPPKLISNAKRRTHPLIWFAAVLCTLVSIAVIIAGVGVFIGYLVIHPRIP I VI AHL+
Sbjct: 1   MPPKLISNAKRRTHPLIWFAAVLCTLVSIAVIIAGVGVFIGYLVIHPRIPMIRVIGAHLN 60

Query: 61  NFQNDIAGRLEVHLTILVEAGNDNAKAHASFSDTSLFLSFLGLNIAELVADPFDVRKNSS 120
           NFQNDIAGRLEV LTILVEA NDNAKAHASFSDT LF SFLGLNIAELVADPFDVRKNSS
Sbjct: 61  NFQNDIAGRLEVQLTILVEAENDNAKAHASFSDTRLFKSFLGLNIAELVADPFDVRKNSS 120

Query: 121 VQFHYAVNSIMIPLNPEQMEEVDFALKTDLIQFDLNGNTRVQWRVGLFGSVKFVCQIHCG 180
           VQFHYAVNSI IPLNPEQMEEVDF LKTDLIQF+LNG+TRVQWRVGLFGSVKFVCQIHCG
Sbjct: 121 VQFHYAVNSIKIPLNPEQMEEVDFVLKTDLIQFNLNGDTRVQWRVGLFGSVKFVCQIHCG 180

Query: 181 LKFHHSNGTYLISPCSSRAK 201
           L+FHHSNGTYLISPCSSRAK
Sbjct: 181 LQFHHSNGTYLISPCSSRAK 200

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BLAST of Carg13148 vs. NCBI nr
Match: XP_022942740.1 (uncharacterized protein LOC111447688 [Cucurbita moschata])

HSP 1 Score: 359.0 bits (920), Expect = 2.7e-95
Identity = 179/184 (97.28%), Postives = 180/184 (97.83%), Query Frame = 0


Query: 1   MPPKLISNAKRRTHPLIWFAAVLCTLVSIAVIIAGVGVFIGYLVIHPRIPTISVIDAHLD 60
           MPPKLISNAKRRTHPLIWFAAVLCTLVSIAVIIAGVGVFIGYLVIHPRIPTISVI AHLD
Sbjct: 1   MPPKLISNAKRRTHPLIWFAAVLCTLVSIAVIIAGVGVFIGYLVIHPRIPTISVIGAHLD 60

Query: 61  NFQNDIAGRLEVHLTILVEAGNDNAKAHASFSDTSLFLSFLGLNIAELVADPFDVRKNSS 120
           NFQN+IAGRLEV LTILVEA NDNAKAHASFSDTSLFLSFLGLNIAELVADPFDVRKN S
Sbjct: 61  NFQNEIAGRLEVQLTILVEAENDNAKAHASFSDTSLFLSFLGLNIAELVADPFDVRKNGS 120

Query: 121 VQFHYAVNSIMIPLNPEQMEEVDFALKTDLIQFDLNGNTRVQWRVGLFGSVKFVCQIHCG 180
           VQFHYAVNSIMIPLNPEQMEEVDFALKTDLIQFDLNGNTRVQWRVGLFGSVKFVCQIHCG
Sbjct: 121 VQFHYAVNSIMIPLNPEQMEEVDFALKTDLIQFDLNGNTRVQWRVGLFGSVKFVCQIHCG 180

Query: 181 LKFH 185
           LKFH
Sbjct: 181 LKFH 184

[Close]

BLAST of Carg13148 vs. NCBI nr
Match: XP_004150550.1 (uncharacterized protein LOC101214190 [Cucumis sativus])

HSP 1 Score: 319.7 bits (818), Expect = 1.8e-83
Identity = 156/200 (78.00%), Postives = 174/200 (87.00%), Query Frame = 0


Query: 1   MPPKLISNAKRRTHPLIWFAAVLCTLVSIAVIIAGVGVFIGYLVIHPRIPTISVIDAHLD 60
           MPPKLIS+AKR THPL+W AA+LCT+VSIAVII G+ VFIGYLVIHPRIPTIS++DAHLD
Sbjct: 1   MPPKLISDAKRHTHPLVWLAALLCTVVSIAVIIGGIVVFIGYLVIHPRIPTISILDAHLD 60

Query: 61  NFQNDIAGRLEVHLTILVEAGNDNAKAHASFSDTSLFLSFLGLNIAELVADPFDVRKNSS 120
           NFQ DIAGRLEV LTI++EA NDNAKAHASFSD+S FL FLG+ IA+LVADPF+VRKNSS
Sbjct: 61  NFQIDIAGRLEVQLTIIIEAKNDNAKAHASFSDSSFFLHFLGIKIAQLVADPFEVRKNSS 120

Query: 121 VQFHYAVNSIMIPLNPEQMEEVDFALKTDLIQFDLNGNTRVQWRVGLFGSVKFVCQIHCG 180
           ++F YAV S  IPLNPEQME VD  LK DL +FDL GNTRVQWRVGL GSVK+ C +HCG
Sbjct: 121 MKFPYAVVSNSIPLNPEQMESVDSDLKADLSRFDLIGNTRVQWRVGLLGSVKYECHLHCG 180

Query: 181 LKFHHSNGTYLISPCSSRAK 201
           LKFH SNGTYL SPCSSR K
Sbjct: 181 LKFHPSNGTYLSSPCSSRVK 200

[Close]

BLAST of Carg13148 vs. ExPASy TrEMBL
Match: A0A6J1FWU7 (uncharacterized protein LOC111447688 OS=Cucurbita moschata OX=3662 GN=LOC111447688 PE=4 SV=1)

HSP 1 Score: 359.0 bits (920), Expect = 1.3e-95
Identity = 179/184 (97.28%), Postives = 180/184 (97.83%), Query Frame = 0


Query: 1   MPPKLISNAKRRTHPLIWFAAVLCTLVSIAVIIAGVGVFIGYLVIHPRIPTISVIDAHLD 60
           MPPKLISNAKRRTHPLIWFAAVLCTLVSIAVIIAGVGVFIGYLVIHPRIPTISVI AHLD
Sbjct: 1   MPPKLISNAKRRTHPLIWFAAVLCTLVSIAVIIAGVGVFIGYLVIHPRIPTISVIGAHLD 60

Query: 61  NFQNDIAGRLEVHLTILVEAGNDNAKAHASFSDTSLFLSFLGLNIAELVADPFDVRKNSS 120
           NFQN+IAGRLEV LTILVEA NDNAKAHASFSDTSLFLSFLGLNIAELVADPFDVRKN S
Sbjct: 61  NFQNEIAGRLEVQLTILVEAENDNAKAHASFSDTSLFLSFLGLNIAELVADPFDVRKNGS 120

Query: 121 VQFHYAVNSIMIPLNPEQMEEVDFALKTDLIQFDLNGNTRVQWRVGLFGSVKFVCQIHCG 180
           VQFHYAVNSIMIPLNPEQMEEVDFALKTDLIQFDLNGNTRVQWRVGLFGSVKFVCQIHCG
Sbjct: 121 VQFHYAVNSIMIPLNPEQMEEVDFALKTDLIQFDLNGNTRVQWRVGLFGSVKFVCQIHCG 180

Query: 181 LKFH 185
           LKFH
Sbjct: 181 LKFH 184

[Close]

BLAST of Carg13148 vs. ExPASy TrEMBL
Match: A0A0A0KX91 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G056550 PE=4 SV=1)

HSP 1 Score: 319.7 bits (818), Expect = 8.7e-84
Identity = 156/200 (78.00%), Postives = 174/200 (87.00%), Query Frame = 0


Query: 1   MPPKLISNAKRRTHPLIWFAAVLCTLVSIAVIIAGVGVFIGYLVIHPRIPTISVIDAHLD 60
           MPPKLIS+AKR THPL+W AA+LCT+VSIAVII G+ VFIGYLVIHPRIPTIS++DAHLD
Sbjct: 1   MPPKLISDAKRHTHPLVWLAALLCTVVSIAVIIGGIVVFIGYLVIHPRIPTISILDAHLD 60

Query: 61  NFQNDIAGRLEVHLTILVEAGNDNAKAHASFSDTSLFLSFLGLNIAELVADPFDVRKNSS 120
           NFQ DIAGRLEV LTI++EA NDNAKAHASFSD+S FL FLG+ IA+LVADPF+VRKNSS
Sbjct: 61  NFQIDIAGRLEVQLTIIIEAKNDNAKAHASFSDSSFFLHFLGIKIAQLVADPFEVRKNSS 120

Query: 121 VQFHYAVNSIMIPLNPEQMEEVDFALKTDLIQFDLNGNTRVQWRVGLFGSVKFVCQIHCG 180
           ++F YAV S  IPLNPEQME VD  LK DL +FDL GNTRVQWRVGL GSVK+ C +HCG
Sbjct: 121 MKFPYAVVSNSIPLNPEQMESVDSDLKADLSRFDLIGNTRVQWRVGLLGSVKYECHLHCG 180

Query: 181 LKFHHSNGTYLISPCSSRAK 201
           LKFH SNGTYL SPCSSR K
Sbjct: 181 LKFHPSNGTYLSSPCSSRVK 200

[Close]

BLAST of Carg13148 vs. ExPASy TrEMBL
Match: A0A6J1C468 (uncharacterized protein LOC111008115 OS=Momordica charantia OX=3673 GN=LOC111008115 PE=4 SV=1)

HSP 1 Score: 319.3 bits (817), Expect = 1.1e-83
Identity = 155/200 (77.50%), Postives = 174/200 (87.00%), Query Frame = 0


Query: 1   MPPKLISNAKRRTHPLIWFAAVLCTLVSIAVIIAGVGVFIGYLVIHPRIPTISVIDAHLD 60
           MPP+LIS+AKRRTHPL+WFAAVLCT++SIAVII G+ VF+GYLVIHPRIPTISVI AHLD
Sbjct: 1   MPPRLISDAKRRTHPLVWFAAVLCTILSIAVIIGGIVVFVGYLVIHPRIPTISVIGAHLD 60

Query: 61  NFQNDIAGRLEVHLTILVEAGNDNAKAHASFSDTSLFLSFLGLNIAELVADPFDVRKNSS 120
            FQ D+AGRLEV LTI+VEA NDNAKAHASFSDTS FLSFLG+ IA LVADPF VRKNSS
Sbjct: 61  GFQIDVAGRLEVQLTIVVEAENDNAKAHASFSDTSFFLSFLGIRIARLVADPFAVRKNSS 120

Query: 121 VQFHYAVNSIMIPLNPEQMEEVDFALKTDLIQFDLNGNTRVQWRVGLFGSVKFVCQIHCG 180
            +F YA+ S  IPLNPEQMEE D+ALK+DL +FDL GNTRVQWRVG+ GSVK+ C +HC 
Sbjct: 121 HKFQYAIASSSIPLNPEQMEEADYALKSDLSRFDLKGNTRVQWRVGMLGSVKYWCHLHCE 180

Query: 181 LKFHHSNGTYLISPCSSRAK 201
           LKFH SNGTYL  PCSS+AK
Sbjct: 181 LKFHPSNGTYLSLPCSSKAK 200

[Close]

BLAST of Carg13148 vs. ExPASy TrEMBL
Match: A0A5D3D1V8 (NDR1/HIN1-like protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G002470 PE=4 SV=1)

HSP 1 Score: 316.2 bits (809), Expect = 9.6e-83
Identity = 155/200 (77.50%), Postives = 173/200 (86.50%), Query Frame = 0


Query: 1   MPPKLISNAKRRTHPLIWFAAVLCTLVSIAVIIAGVGVFIGYLVIHPRIPTISVIDAHLD 60
           MPPKLIS+AKRRTHPL+W AA+LCT+VSIAVII G+ VFIGYLVIHPRIPTIS++DAHLD
Sbjct: 1   MPPKLISDAKRRTHPLVWLAALLCTVVSIAVIIGGIVVFIGYLVIHPRIPTISILDAHLD 60

Query: 61  NFQNDIAGRLEVHLTILVEAGNDNAKAHASFSDTSLFLSFLGLNIAELVADPFDVRKNSS 120
           NFQ DIAGRLEV LTI+VEA NDNAKAHASFSD+S FL FL + IA+LVADPF+V+KNSS
Sbjct: 61  NFQIDIAGRLEVQLTIVVEAKNDNAKAHASFSDSSFFLHFLEIKIAQLVADPFEVKKNSS 120

Query: 121 VQFHYAVNSIMIPLNPEQMEEVDFALKTDLIQFDLNGNTRVQWRVGLFGSVKFVCQIHCG 180
           ++FHYAV S  IPLNPEQME VD+ LK DL  F L GNTRVQWRVGL GSVK+ C +HC 
Sbjct: 121 MKFHYAVASNSIPLNPEQMETVDYDLKADLSPFTLIGNTRVQWRVGLLGSVKYECHLHCE 180

Query: 181 LKFHHSNGTYLISPCSSRAK 201
           LKFH SNGTYL SPCSSR K
Sbjct: 181 LKFHPSNGTYLRSPCSSRVK 200

[Close]

BLAST of Carg13148 vs. ExPASy TrEMBL
Match: A0A1S3BSH0 (NDR1/HIN1-like protein 12 OS=Cucumis melo OX=3656 GN=LOC103493029 PE=4 SV=1)

HSP 1 Score: 316.2 bits (809), Expect = 9.6e-83
Identity = 155/200 (77.50%), Postives = 173/200 (86.50%), Query Frame = 0


Query: 1   MPPKLISNAKRRTHPLIWFAAVLCTLVSIAVIIAGVGVFIGYLVIHPRIPTISVIDAHLD 60
           MPPKLIS+AKRRTHPL+W AA+LCT+VSIAVII G+ VFIGYLVIHPRIPTIS++DAHLD
Sbjct: 1   MPPKLISDAKRRTHPLVWLAALLCTVVSIAVIIGGIVVFIGYLVIHPRIPTISILDAHLD 60

Query: 61  NFQNDIAGRLEVHLTILVEAGNDNAKAHASFSDTSLFLSFLGLNIAELVADPFDVRKNSS 120
           NFQ DIAGRLEV LTI+VEA NDNAKAHASFSD+S FL FL + IA+LVADPF+V+KNSS
Sbjct: 61  NFQIDIAGRLEVQLTIVVEAKNDNAKAHASFSDSSFFLHFLEIKIAQLVADPFEVKKNSS 120

Query: 121 VQFHYAVNSIMIPLNPEQMEEVDFALKTDLIQFDLNGNTRVQWRVGLFGSVKFVCQIHCG 180
           ++FHYAV S  IPLNPEQME VD+ LK DL  F L GNTRVQWRVGL GSVK+ C +HC 
Sbjct: 121 MKFHYAVASNSIPLNPEQMETVDYDLKADLSPFTLIGNTRVQWRVGLLGSVKYECHLHCE 180

Query: 181 LKFHHSNGTYLISPCSSRAK 201
           LKFH SNGTYL SPCSSR K
Sbjct: 181 LKFHPSNGTYLRSPCSSRVK 200

[Close]

BLAST of Carg13148 vs. TAIR 10
Match: AT5G45320.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: inflorescence meristem, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 2 (InterPro:IPR004864); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G26350.1); Has 253 Blast hits to 253 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 253; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 200.7 bits (509), Expect = 1.1e-51
Identity = 101/198 (51.01%), Postives = 132/198 (66.67%), Query Frame = 0


Query: 3   PKLISNAKRRTHPLIWFAAVLCTLVSIAVIIAGVGVFIGYLVIHPRIPTISVIDAHLDNF 62
           P+L S  +  T P IW AA++C ++SI VI+ G+ VF+GYLVIHPR+P ISV DAHLD  
Sbjct: 2   PRLTS--RHGTSPFIWCAAIICAIISIVVIVGGIIVFVGYLVIHPRVPIISVADAHLDFL 61

Query: 63  QNDIAGRLEVHLTILVEAGNDNAKAHASFSDTSLFLSFLGLNIAELVADPFDVRKNSSVQ 122
           + DI G L+  LTI++   NDNAKAHA F +T   LS+ G  IA L A  F+V K  S+ 
Sbjct: 62  KYDIVGVLQTQLTIVIRVENDNAKAHALFDETEFKLSYEGKPIAILKAPEFEVVKEKSMF 121

Query: 123 FHYAVNSIMIPLNPEQMEEVDFALKTDLIQFDLNGNTRVQWRVGLFGSVKFVCQIHCGLK 182
             Y V S  IPLNP  M+ VD+A+K D+I F+L G +R +WRVG  GSVKF C + C L+
Sbjct: 122 LPYLVQSYPIPLNPTMMQAVDYAVKKDVITFELKGGSRTRWRVGPLGSVKFECNLSCQLR 181

Query: 183 FHHSNGTYLISPCSSRAK 201
           F  S+ +Y+ SPC+S  K
Sbjct: 182 FRPSDHSYIPSPCTSAHK 197

[Close]

BLAST of Carg13148 vs. TAIR 10
Match: AT3G26350.1 (LOCATED IN: chloroplast; EXPRESSED IN: root, pedicel, carpel, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 2 (InterPro:IPR004864); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G13050.1); Has 3534 Blast hits to 2704 proteins in 342 species: Archae - 6; Bacteria - 192; Metazoa - 1076; Fungi - 505; Plants - 1162; Viruses - 224; Other Eukaryotes - 369 (source: NCBI BLink). )

HSP 1 Score: 72.0 bits (175), Expect = 6.1e-13
Identity = 45/174 (25.86%), Postives = 78/174 (44.83%), Query Frame = 0


Query: 11  RRTHPLIWFAAVLCTLVSIAVIIAGVGVFIGYLVIHPRIPTISVIDAHLDNFQNDIAGRL 70
           R T+ + W AA  C +  + +I+ G+ + I YLV  PR P + +  A+L+    D+   L
Sbjct: 167 RETNAMTWSAAFCCAIFWVILILGGLIILIVYLVYRPRSPYVDISAANLNAAYLDMGFLL 226

Query: 71  EVHLTILVEAGNDNAKAHASFSDTSLFLSFLGLNIAELVADPFDVRKNSSVQFHYAVNSI 130
              LTIL    N + K+   FS  +  L +    IA    +PF V K +S+  +  + S 
Sbjct: 227 NGDLTILANVTNPSKKSSVEFSYVTFELYYYNTLIATQYIEPFKVPKKTSMFANVHLVSS 286

Query: 131 MIPLNPEQMEEVDFALKTDLIQFDLNGNTRVQWRVGLFGSVKFVCQIHCGLKFH 185
            + L   Q  E+   ++T  +  +L G    +  +G      +    HC +  +
Sbjct: 287 QVQLQATQSRELQRQIETGPVLLNLRGMFHARSHIGPLFRYSYKLHTHCSVSLN 340

[Close]

BLAST of Carg13148 vs. TAIR 10
Match: AT4G26490.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family )

HSP 1 Score: 62.4 bits (150), Expect = 4.8e-10
Identity = 44/167 (26.35%), Postives = 73/167 (43.71%), Query Frame = 0


Query: 12  RTHPLIWFAAVLCTLVSIAVIIAGVGVFIGYLVIHPRIPTISVIDAHLDNFQNDIAGRLE 71
           RT   IW  A  C + S+ +I   +   I +L I PRIP   + +A+L     D      
Sbjct: 81  RTSLWIWCVAGFCFVFSLLLIFFAIATLIVFLAIRPRIPVFDIPNANLHTIYFDTPEFFN 140

Query: 72  VHLTILVEAGNDNAKAHASFSDTSLFLSFLGLNIAELVADPFDVRKNSSVQFHYAVNSIM 131
             L++LV   N N K    F    + L F    IA  V  PF  +K+ +      + S +
Sbjct: 141 GDLSMLVNFTNPNKKIEVKFEKLRIELFFFNRLIAAQVVQPFLQKKHETRLEPIRLISSL 200

Query: 132 IPLNPEQMEEVDFALKTDLIQFDLNGNTRVQWRVGLFGSVKFVCQIH 179
           + L      E+   L+ + I++++ G  +V+     FG + +  Q+H
Sbjct: 201 VGLPVNHAVELRRQLENNKIEYEIRGTFKVK---AHFGMIHYSYQLH 244

The following BLAST results are available for this feature:

BLAST of Carg13148 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7031080.1	5.5e-109	100.00	hypothetical protein SDJN02_05119, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6600429.1	5.2e-107	99.00	hypothetical protein SDJN03_05662, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023526921.1	2.1e-100	93.50	uncharacterized protein LOC111790256 [Cucurbita pepo subsp. pepo]	[more]
XP_022942740.1	2.7e-95	97.28	uncharacterized protein LOC111447688 [Cucurbita moschata]	[more]
XP_004150550.1	1.8e-83	78.00	uncharacterized protein LOC101214190 [Cucumis sativus]	[more]

BLAST of Carg13148 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg13148 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FWU7	1.3e-95	97.28	uncharacterized protein LOC111447688 OS=Cucurbita moschata OX=3662 GN=LOC1114476...	[more]
A0A0A0KX91	8.7e-84	78.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G056550 PE=4 SV=1	[more]
A0A6J1C468	1.1e-83	77.50	uncharacterized protein LOC111008115 OS=Momordica charantia OX=3673 GN=LOC111008...	[more]
A0A5D3D1V8	9.6e-83	77.50	NDR1/HIN1-like protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A1S3BSH0	9.6e-83	77.50	NDR1/HIN1-like protein 12 OS=Cucumis melo OX=3656 GN=LOC103493029 PE=4 SV=1	[more]

BLAST of Carg13148 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G45320.1	1.1e-51	51.01	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]
AT3G26350.1	6.1e-13	25.86	LOCATED IN: chloroplast; EXPRESSED IN: root, pedicel, carpel, stamen; EXPRESSED ...	[more]
AT4G26490.1	4.8e-10	26.35	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31852	LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY	coord: 7..200
None	No IPR available	PANTHER	PTHR31852:SF9	LATE EMBRYOGENESIS ABUNDANT PROTEIN	coord: 7..200

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg13148-RA	Carg13148-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane