Carg13135 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg13135
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Protein FAR1-RELATED SEQUENCE
Location	Carg_Chr04: 3232783 .. 3233288 (-)
RNA-Seq Expression	Carg13135
Synteny	Carg13135

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGCCTCCCCACGATGCTTCGTATTATGTCAATCAACAAAGTATTCAAGGGCTGGTTAGTCTTGCTATGGTTGTGTTAGATACTCAATGATCATGAAGGTTGTTTAATTGTTTATGAATCAAGTTCAATATATTCTTTTTTCAGGGACAATTGAATACAATTGCAGCCAGTCAGGATGGGTTTTCTGGGGCGCAGCATAATGGCATTCATGCACTGGTATCTGAGATTATTTCAAAAAATATACTTAGAGGGAACGTTTTCTTCAACAGATATCTGATAGATCTTTTTCTGGTTGAATTTACATACAGGTGGATTATCGGCCAGCAACAAGTTATAGTTATAGTTTTACAGGTTTGTTTAATACGTTATTTTAGAACTGTGCTGCAATCTTTTGTTGGTGGTTTGGCTGTTCTTGACCTGTCAAAACTATTGCAGGATTAGCAACATTTAAGATCTGCCCAGCTTCATGGCAGTACCTCAGGACATACTTGATGAAGCAATAG

mRNA sequence

ATGGAGCCTCCCCACGATGCTTCGTATTATGTCAATCAACAAAGTATTCAAGGGCTGGTTAGTCTTGCTATGGGACAATTGAATACAATTGCAGCCAGTCAGGATGGGTTTTCTGGGGCGCAGCATAATGGCATTCATGCACTGGTGGATTATCGGCCAGCAACAAGTTATAGTTATAGTTTTACAGGATTAGCAACATTTAAGATCTGCCCAGCTTCATGGCAGTACCTCAGGACATACTTGATGAAGCAATAG

Coding sequence (CDS)

ATGGAGCCTCCCCACGATGCTTCGTATTATGTCAATCAACAAAGTATTCAAGGGCTGGTTAGTCTTGCTATGGGACAATTGAATACAATTGCAGCCAGTCAGGATGGGTTTTCTGGGGCGCAGCATAATGGCATTCATGCACTGGTGGATTATCGGCCAGCAACAAGTTATAGTTATAGTTTTACAGGATTAGCAACATTTAAGATCTGCCCAGCTTCATGGCAGTACCTCAGGACATACTTGATGAAGCAATAG

Protein sequence

MEPPHDASYYVNQQSIQGLVSLAMGQLNTIAASQDGFSGAQHNGIHALVDYRPATSYSYSFTGLATFKICPASWQYLRTYLMKQ

Homology

[Close]

BLAST of Carg13135 vs. NCBI nr
Match: KAG7031092.1 (Protein FAR-RED IMPAIRED RESPONSE 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 174.5 bits (441), Expect = 3.9e-40
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0


Query: 1  MEPPHDASYYVNQQSIQGLVSLAMGQLNTIAASQDGFSGAQHNGIHALVDYRPATSYSYS 60
          MEPPHDASYYVNQQSIQGLVSLAMGQLNTIAASQDGFSGAQHNGIHALVDYRPATSYSYS
Sbjct: 1  MEPPHDASYYVNQQSIQGLVSLAMGQLNTIAASQDGFSGAQHNGIHALVDYRPATSYSYS 60

Query: 61 FTGLATFKICPASWQYLRTYLMKQ 85
          FTGLATFKICPASWQYLRTYLMKQ
Sbjct: 61 FTGLATFKICPASWQYLRTYLMKQ 84

[Close]

BLAST of Carg13135 vs. NCBI nr
Match: KAG6600441.1 (Protein FAR-RED IMPAIRED RESPONSE 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 160.2 bits (404), Expect = 7.6e-36
Identity = 79/84 (94.05%), Postives = 79/84 (94.05%), Query Frame = 0


Query: 1   MEPPHDASYYVNQQSIQGLVSLAMGQLNTIAASQDGFSGAQHNGIHALVDYRPATSYSYS 60
           MEPPHDASYYVNQQSIQGL     GQLNTIAASQDGFSGAQHNGIHALVDYRPATSYSYS
Sbjct: 663 MEPPHDASYYVNQQSIQGL-----GQLNTIAASQDGFSGAQHNGIHALVDYRPATSYSYS 722

Query: 61  FTGLATFKICPASWQYLRTYLMKQ 85
           FTGLATFKICPASWQYLRTYLMKQ
Sbjct: 723 FTGLATFKICPASWQYLRTYLMKQ 741

[Close]

BLAST of Carg13135 vs. NCBI nr
Match: XP_022942290.1 (LOW QUALITY PROTEIN: protein FAR-RED IMPAIRED RESPONSE 1-like [Cucurbita moschata])

HSP 1 Score: 105.5 bits (262), Expect = 2.2e-19
Identity = 53/60 (88.33%), Postives = 54/60 (90.00%), Query Frame = 0


Query: 1   MEPPHDASYYVNQQSIQGLVSLAMGQLNTIAASQDGFSGAQHNGIHALVDYRPATSYSYS 60
           MEPPHDASYYVNQQSIQGL     GQLNTIAASQDGF GAQHNGIHALVDYRPATS+SYS
Sbjct: 734 MEPPHDASYYVNQQSIQGL-----GQLNTIAASQDGFFGAQHNGIHALVDYRPATSHSYS 788

[Close]

BLAST of Carg13135 vs. NCBI nr
Match: XP_023529499.1 (protein FAR-RED IMPAIRED RESPONSE 1-like [Cucurbita pepo subsp. pepo] >XP_023529507.1 protein FAR-RED IMPAIRED RESPONSE 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 102.8 bits (255), Expect = 1.4e-18
Identity = 52/60 (86.67%), Postives = 52/60 (86.67%), Query Frame = 0


Query: 1   MEPPHDASYYVNQQSIQGLVSLAMGQLNTIAASQDGFSGAQHNGIHALVDYRPATSYSYS 60
           MEPP DASYYVNQQSIQGL     GQLNTI ASQDGF GAQHNGIHALVDYRPATSYSYS
Sbjct: 734 MEPPRDASYYVNQQSIQGL-----GQLNTITASQDGFFGAQHNGIHALVDYRPATSYSYS 788

[Close]

BLAST of Carg13135 vs. NCBI nr
Match: XP_022979146.1 (protein FAR-RED IMPAIRED RESPONSE 1-like [Cucurbita maxima])

HSP 1 Score: 99.4 bits (246), Expect = 1.6e-17
Identity = 51/60 (85.00%), Postives = 51/60 (85.00%), Query Frame = 0


Query: 1   MEPPHDASYYVNQQSIQGLVSLAMGQLNTIAASQDGFSGAQHNGIHALVDYRPATSYSYS 60
           MEPP DASYYVNQQSIQGL     GQLNTIAAS DG  GAQHNGIHALVDYRPATSYSYS
Sbjct: 734 MEPPRDASYYVNQQSIQGL-----GQLNTIAASHDGSFGAQHNGIHALVDYRPATSYSYS 788

[Close]

BLAST of Carg13135 vs. ExPASy Swiss-Prot
Match: Q9SWG3 (Protein FAR-RED IMPAIRED RESPONSE 1 OS=Arabidopsis thaliana OX=3702 GN=FAR1 PE=1 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 8.5e-06
Identity = 28/62 (45.16%), Postives = 42/62 (67.74%), Query Frame = 0


Query: 1   MEPPHDASYYVNQQSIQGLVSLAMGQLNTIAASQDGFSGAQH--NGIHALVDYRPATSYS 60
           MEPPH+  YYV+Q++IQGL     GQLN+IA +QD F   Q   +G+   +D+RP  +++
Sbjct: 753 MEPPHE-GYYVDQRTIQGL-----GQLNSIAPAQDSFFTNQQAMSGMVGQIDFRPPPNFT 808

[Close]

BLAST of Carg13135 vs. ExPASy TrEMBL
Match: A0A6J1FW03 (Protein FAR1-RELATED SEQUENCE OS=Cucurbita moschata OX=3662 GN=LOC111447377 PE=3 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 1.1e-19
Identity = 53/60 (88.33%), Postives = 54/60 (90.00%), Query Frame = 0


Query: 1   MEPPHDASYYVNQQSIQGLVSLAMGQLNTIAASQDGFSGAQHNGIHALVDYRPATSYSYS 60
           MEPPHDASYYVNQQSIQGL     GQLNTIAASQDGF GAQHNGIHALVDYRPATS+SYS
Sbjct: 734 MEPPHDASYYVNQQSIQGL-----GQLNTIAASQDGFFGAQHNGIHALVDYRPATSHSYS 788

[Close]

BLAST of Carg13135 vs. ExPASy TrEMBL
Match: A0A6J1IPY8 (Protein FAR1-RELATED SEQUENCE OS=Cucurbita maxima OX=3661 GN=LOC111478872 PE=3 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 7.7e-18
Identity = 51/60 (85.00%), Postives = 51/60 (85.00%), Query Frame = 0


Query: 1   MEPPHDASYYVNQQSIQGLVSLAMGQLNTIAASQDGFSGAQHNGIHALVDYRPATSYSYS 60
           MEPP DASYYVNQQSIQGL     GQLNTIAAS DG  GAQHNGIHALVDYRPATSYSYS
Sbjct: 734 MEPPRDASYYVNQQSIQGL-----GQLNTIAASHDGSFGAQHNGIHALVDYRPATSYSYS 788

[Close]

BLAST of Carg13135 vs. ExPASy TrEMBL
Match: A0A6J1J902 (Protein FAR1-RELATED SEQUENCE OS=Cucurbita maxima OX=3661 GN=LOC111482839 PE=3 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 8.6e-17
Identity = 47/60 (78.33%), Postives = 52/60 (86.67%), Query Frame = 0


Query: 1   MEPPHDASYYVNQQSIQGLVSLAMGQLNTIAASQDGFSGAQHNGIHALVDYRPATSYSYS 60
           MEPPHDASYYV+QQSIQGL     GQLNTIAA+ DG+ GAQH+ IHALVDYRPATSY+YS
Sbjct: 735 MEPPHDASYYVDQQSIQGL-----GQLNTIAANHDGYFGAQHSSIHALVDYRPATSYNYS 789

[Close]

BLAST of Carg13135 vs. ExPASy TrEMBL
Match: A0A6J1EYG5 (Protein FAR1-RELATED SEQUENCE OS=Cucurbita moschata OX=3662 GN=LOC111437579 PE=3 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 8.6e-17
Identity = 47/60 (78.33%), Postives = 52/60 (86.67%), Query Frame = 0


Query: 1   MEPPHDASYYVNQQSIQGLVSLAMGQLNTIAASQDGFSGAQHNGIHALVDYRPATSYSYS 60
           MEPPHDASYYV+QQSIQGL     GQLNTIAA+ DG+ GAQH+ IHALVDYRPATSY+YS
Sbjct: 735 MEPPHDASYYVDQQSIQGL-----GQLNTIAANHDGYFGAQHSSIHALVDYRPATSYNYS 789

[Close]

BLAST of Carg13135 vs. ExPASy TrEMBL
Match: A0A0A0KXC8 (Protein FAR1-RELATED SEQUENCE OS=Cucumis sativus OX=3659 GN=Csa_4G056770 PE=3 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 1.1e-16
Identity = 47/60 (78.33%), Postives = 49/60 (81.67%), Query Frame = 0


Query: 1   MEPPHDASYYVNQQSIQGLVSLAMGQLNTIAASQDGFSGAQHNGIHALVDYRPATSYSYS 60
           MEPPHDASYYV+QQSIQGL     GQLNTIAA+ DGF G QHN IH LVDYRP TSYSYS
Sbjct: 734 MEPPHDASYYVSQQSIQGL-----GQLNTIAANHDGFFGVQHNSIHTLVDYRPTTSYSYS 788

[Close]

BLAST of Carg13135 vs. TAIR 10
Match: AT4G15090.1 (FRS (FAR1 Related Sequences) transcription factor family )

HSP 1 Score: 50.8 bits (120), Expect = 6.1e-07
Identity = 28/62 (45.16%), Postives = 42/62 (67.74%), Query Frame = 0


Query: 1   MEPPHDASYYVNQQSIQGLVSLAMGQLNTIAASQDGFSGAQH--NGIHALVDYRPATSYS 60
           MEPPH+  YYV+Q++IQGL     GQLN+IA +QD F   Q   +G+   +D+RP  +++
Sbjct: 753 MEPPHE-GYYVDQRTIQGL-----GQLNSIAPAQDSFFTNQQAMSGMVGQIDFRPPPNFT 808

The following BLAST results are available for this feature:

BLAST of Carg13135 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7031092.1	3.9e-40	100.00	Protein FAR-RED IMPAIRED RESPONSE 1, partial [Cucurbita argyrosperma subsp. argy...	[more]
KAG6600441.1	7.6e-36	94.05	Protein FAR-RED IMPAIRED RESPONSE 1, partial [Cucurbita argyrosperma subsp. soro...	[more]
XP_022942290.1	2.2e-19	88.33	LOW QUALITY PROTEIN: protein FAR-RED IMPAIRED RESPONSE 1-like [Cucurbita moschat...	[more]
XP_023529499.1	1.4e-18	86.67	protein FAR-RED IMPAIRED RESPONSE 1-like [Cucurbita pepo subsp. pepo] >XP_023529...	[more]
XP_022979146.1	1.6e-17	85.00	protein FAR-RED IMPAIRED RESPONSE 1-like [Cucurbita maxima]	[more]

BLAST of Carg13135 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SWG3	8.5e-06	45.16	Protein FAR-RED IMPAIRED RESPONSE 1 OS=Arabidopsis thaliana OX=3702 GN=FAR1 PE=1...	[more]

BLAST of Carg13135 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FW03	1.1e-19	88.33	Protein FAR1-RELATED SEQUENCE OS=Cucurbita moschata OX=3662 GN=LOC111447377 PE=3...	[more]
A0A6J1IPY8	7.7e-18	85.00	Protein FAR1-RELATED SEQUENCE OS=Cucurbita maxima OX=3661 GN=LOC111478872 PE=3 S...	[more]
A0A6J1J902	8.6e-17	78.33	Protein FAR1-RELATED SEQUENCE OS=Cucurbita maxima OX=3661 GN=LOC111482839 PE=3 S...	[more]
A0A6J1EYG5	8.6e-17	78.33	Protein FAR1-RELATED SEQUENCE OS=Cucurbita moschata OX=3662 GN=LOC111437579 PE=3...	[more]
A0A0A0KXC8	1.1e-16	78.33	Protein FAR1-RELATED SEQUENCE OS=Cucumis sativus OX=3659 GN=Csa_4G056770 PE=3 SV...	[more]

BLAST of Carg13135 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G15090.1	6.1e-07	45.16	FRS (FAR1 Related Sequences) transcription factor family	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg13135-RA	Carg13135-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010018	far-red light signaling pathway
biological_process	GO:1900056	negative regulation of leaf senescence
biological_process	GO:0042753	positive regulation of circadian rhythm
biological_process	GO:0045944	positive regulation of transcription by RNA polymerase II
biological_process	GO:0009585	red, far-red light phototransduction
cellular_component	GO:0005634	nucleus
molecular_function	GO:0001228	DNA-binding transcription activator activity, RNA polymerase II-specific
molecular_function	GO:0008270	zinc ion binding