Carg12931 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg12931
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Unknown protein
Location	Carg_Chr10: 3706514 .. 3706954 (+)
RNA-Seq Expression	Carg12931
Synteny	Carg12931

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GCTTAGGATTTCATTTCGTTGAGCGACTAGAGTTTCATCCAAGCGCTCGCGGAGGCTATGAACACGGTTGAGGACTCGTTCAGCCATGGCTATGTTCTTGGAGGATGAACAGATATCTCAGAAAAACCTTGGTTTGTTTCAGCTGCAAAAAGAAAACATCAAAGTAAGTGAATATTCCATTTTATCCCAAATCAAACTGTTTTGATTTCCAGCGATGAAGAAGATCAAGATTTCAAGCTATTTGACCATTATGAACTCTCTTCTCCAGTGAAGAAACTCAAAAGTCTTAGAACAGAGCAGAGAAACCTCAGTAGGACACAAAGAAGAACATGGAAGAACAAGAGAAACACAGAGAGATTACAAGATACAGAAAATCAAAAGAAATCAAAACTGGGTTCGTCCACAAAAAAGCCCTCAGATCAGAACAACAATGAGCAATGA

mRNA sequence

GCTTAGGATTTCATTTCGTTGAGCGACTAGAGTTTCATCCAAGCGCTCGCGGAGGCTATGAACACGGTTGAGGACTCGTTCAGCCATGGCTATGTTCTTGGAGGATGAACAGATATCTCAGAAAAACCTTGGTTTGTTTCAGCTGCAAAAAGAAAACATCAAAAAACTCAAAAGTCTTAGAACAGAGCAGAGAAACCTCAGTAGGACACAAAGAAGAACATGGAAGAACAAGAGAAACACAGAGAGATTACAAGATACAGAAAATCAAAAGAAATCAAAACTGGGTTCGTCCACAAAAAAGCCCTCAGATCAGAACAACAATGAGCAATGA

Coding sequence (CDS)

ATGGCTATGTTCTTGGAGGATGAACAGATATCTCAGAAAAACCTTGGTTTGTTTCAGCTGCAAAAAGAAAACATCAAAAAACTCAAAAGTCTTAGAACAGAGCAGAGAAACCTCAGTAGGACACAAAGAAGAACATGGAAGAACAAGAGAAACACAGAGAGATTACAAGATACAGAAAATCAAAAGAAATCAAAACTGGGTTCGTCCACAAAAAAGCCCTCAGATCAGAACAACAATGAGCAATGA

Protein sequence

MAMFLEDEQISQKNLGLFQLQKENIKKLKSLRTEQRNLSRTQRRTWKNKRNTERLQDTENQKKSKLGSSTKKPSDQNNNEQ

Homology

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BLAST of Carg12931 vs. NCBI nr
Match: KAG7023726.1 (hypothetical protein SDJN02_14752 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 143.7 bits (361), Expect = 7.1e-31
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0


Query: 1  MAMFLEDEQISQKNLGLFQLQKENIKKLKSLRTEQRNLSRTQRRTWKNKRNTERLQDTEN 60
          MAMFLEDEQISQKNLGLFQLQKENIKKLKSLRTEQRNLSRTQRRTWKNKRNTERLQDTEN
Sbjct: 1  MAMFLEDEQISQKNLGLFQLQKENIKKLKSLRTEQRNLSRTQRRTWKNKRNTERLQDTEN 60

Query: 61 QKKSKLGSSTKKPSDQNNNEQ 82
          QKKSKLGSSTKKPSDQNNNEQ
Sbjct: 61 QKKSKLGSSTKKPSDQNNNEQ 81

The following BLAST results are available for this feature:

BLAST of Carg12931 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7023726.1	7.1e-31	100.00	hypothetical protein SDJN02_14752 [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of Carg12931 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg12931 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg12931 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 31..81
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 31..69

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg12931-RA	Carg12931-RA	mRNA