Carg12925 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATTTATTTATTTGTAAAAAGTTGCGACGAATTCAGAGGCGATCCGCTACCAGTTTCTTTCTGAGCTCTGCAAAACGGAGAATTTGACTGAGTTCTGAGGTCGGACGATCACTGCACTCCGGCGGACATGACGGTGGTTGCTCACCGTCAAAATTGATCGAAAGCATCAATACAAGAATCGGAGAATCGAGCAATTGAGAGGATCGATCGGCGGAGATCCTAAAAATGTCGGTGGAGCCTCCTCCTTTCCAGGAAGCAGCGCGCTGCGAGGTCTGCAAATGCAGTTTCAACACCTTCCGGCGAAGGGTACCAAATTCTATTTCCCCTATAATTTAATCGACTTTGATGACATCGTTCAGATTGAGCTACTGCATAGATGACTGATTCCGATTCTATTTCGAGCTGAGATTAAACGATTGTTCTGTGTTTTTTTTCAAATAATTATTTGCAGCATCATTGCCGATGCTGTGGAAGGACGTTGTGCCACGAGCATTCTTCTTTTCAAATGGTATTATTCGTTCCTCCTCCTAGTTGATGGCTTGCTTTAATAGGGAACTTATTGCGATCTGATTGGTATATTTACGTTCTTGTTTGTGGAAATTCAGGCCTTGCCGCAGTTCGGTATTCAATCCTCTGTTAGAGTTTGTGGTGACTGTTTCAATGTCTCCTCTCAGTAAGTCATGTATAAATTTGATCATACGCTTTGTCATACCTTCTTTTCCTTGAGCATTTATTCAAGAAAGGATGTATTTCTTAACGTCTGCTTGATAATTCATTTCATCCTGTATAAATAATAAGCTCAGAATTAAAGTGCGCTGAGTTCAAACTGAAATGGAATGATTCTATGCGTTATTAACTGTTTCTTGCAGCTTCTTGAACTTGAAATTTCTTGTTAGAGGATTCAAGTTCTAGATTATTTTTCCTATAAATATACTTGAAAACTGAAGATTAGAAGCTTAATAATCCCAATTGGAATCAGGCGTTCTTGTACCAAGGACTTTGGTTTGTATGAGAATCCCGAAATTTTGAACTTTTCGAACCTGTTTATGGATGATATTCAGGACTTAGAATCTCTGGTCATTGTTTCTGTTGAAGACGGTGCCTACATCAATGCATGTTGTTCATGAAGTTTGCACCTTACTATATTCTATTTCTTATTTTTTAGCTTTCATGTGAAGGCACCATTAAAACTTTCAGTGGGTTTCCAATTTCATCGACAATGAAATTTTCCGCTCCTGATCGTCTTCTCTTCTATGAATGAGTGGAGTTGAAACCTACAGTCTAAAACATTCTTTCAATGCTCTTTAAAGGCTCAAAGTAATTCAAAACCACCAATGATGGGGTAGTTGGATATTGGTGTGATATGAAGGCTATTGCTTGTGGGATGAAGCATAAAAGCTCTTAGATCAGTCATCAGCTCGTTCTTCTTGGATTTAGATATAAAAAATTGTATACAGTTTTGGAAAGTCCTTGTCTTCCCTCGTTTCCCCCTAAATTCTTGTTCTCGTCTGAGAGGTATCCTTTGAGCTCTCAATCTTACGCAGAGATCGAACCTAGCATTTAGCACCGGTCAGTCCATTTATGATTCAATGTATAGATTGAACCTAGCATACTAAATTTATCGAGTCTGCCATATTACAGATCCAGAGAAGTTGGTCAACCACCATCGTTAGCTGTAGTCGATCAAGTTGCAGACACAGTTTCCAAACTAAACCTTGATGGGGATGTAAATTCTGAGCCTAAACCAGCTGTGGAGCATCAACCTGCGTTCGGCATTTCAGATTGCAAGTGTGGAATGCCATTATGTATTTGTGAAACTCCAGTCCAGTCTATGGAAACAGAAGCAGTTCCTTCACAGGTTTTAATATTAGTAATTTCTAGTACTCATGTATGAGCTGTGCCCCTCATGGAATTTGATAATTCTTGTGGCAGAAGAAAACGGCTTCCACCTCTACTCAGTACAATTCAAAACCAAAGAAGACTGATTCCAATCTAAGGAATAGAGGATCCACCTCCAACAGCAAGCTTCGGTATGTTAGCAATCTGTTTTATTCTAACAGGTTTGTGTCTGTCTTCTCTTTCATGCCCTGTACATGGGAAAAGTTAAGTTTATCACACTCCTTGATGAGTTCATATGACTTGGGTCAAGTGGCATATTTTCTCATTGCTATCATTCTTTGGTATATACTCGCTTTATCGCTCGTATTATTGATTTTGAGGATAAGTCCGATCTTAATCTGCAGTTGTAATTTATATTATTAAACAGGAATCTTGCAGCAGATGAATCGAGGATTAATTATGAAGCAAGTGGCGAGGTATATAGTCTGTATCGTCTTAATATTCCTTTCGTGTCTGTGAAAGGGTTTAAAGTTCTGCTTCATCTATAGAATTTCACTTTCTTACAGGGGTTAAGGGAAGCTATCAAGAATGGTGACACTATTGCTGTCAAGAAACTTTTGAGCGAGGTACCAAATGCCTTCATAACAATCAAAGTATATAATTGTGATGTCCCCCTGCAGACGCGTTTTAAAGCCTTGAGGGGAAGCCCGAAAGGGAAAGCCCAAAGAGGACAATATCTGCTGACGGTGGATCTGGGTCGTTACAAATGGTATCAGAGTCAAACACCGGACGATGTGTCAGCCTTCTCGCCCTTCCCTGAAGGGGGGTAGACACGAGGCGATGTGCCAGTAAGGACGCTAGCCCCAAAGGGGAGTGGATTTGGAGGGGGTCCCACATCGATTGGAGAAAGGAATGAGTGCCAGCGAGGATGCTGGGCACTGAAGAGAGGTGGATTATGATATCCCACATTCGTTGGGGAGGCGAACAAAATACCCTTTATAAGGGTTTGGAAACCTTCCCCTAGCAGACGCGTTTTAAAGCCTTGAGGGGAAACCCGAAAGGGAAAGCCCAAAGAGAACAATATTTGCTAGCGGTGGATCTGGGTCGTTACAATAATAGAATTATTTACTCTTCTCATGTTGGCAGGGTGTAGATGCAAATTACCATGACAAACAAGGACTGTCTTTGCTGCATGTGGTATAAAATCTCTCTTTCTTCCCCCCCACCCCAGCAGAACATAGCATTCATGCTGGTTTAGAGGTATAATATTCCGATCAATTTTCATTTGGATGTAGGCGGCGGTCTTTAATCAGACTGATATTGTTTTTGCCCTCATTGAAAGCGGGGCTAGCCTGGACTACAAAAATGCTCAAGGTAACTAACTACTTGTCAACGTTTCTTAAAAAGTGATACGAAAAGAAAAGGTCACTGGATCTTGCGAGATGAATGGCTCTTATTTAGCGCTTTATGGTTTGTCGGTGTATAGTACAAGATAGGACTGAATAACATGTACACTATTTGATAATTACCTAAGAGAAAAGCTTAGATATTGCATAATGATTCATTGTTGCCACTGCCACAGGAGAAACGCCATTGGATTGTGCTCCAGCTTCTTTGCAATATAAGATACGAGAGAAGATGGGAGGGCAGTGAAGAAGGAGGAAGCAACTATCGACATAACCAGGGAGATGACATCCCATATTTTTCTAGTAAATACTTCTATAATCTCTGCACCAGAGTGCTTTACTTTTCTTTTTTTGTTCCCTTCTTTTTGATGTCTCATACTCTGGTAATGGCAGATTATCTGGCTGTCTCTGTAGAATCTCTCTTTCAACATAACTTTTCAGCCATCATATACCATAAATGGTTACATTAGGTTATCATTTTAGATATCCTCCGCAGTTAGTGTTGTTCCTAACTTGGATAGTCTTTGGTGTTTAATTTAGAGGCAGTTCGGGAGCTTAGTCGAAAAACTGTCGAAATAGGTAGAAGTAAATTTAGGTATCTCTCTCTCTCTATACACAGTAAGATCTTAGTTTGT ATTTATTTATTTGTAAAAAGTTGCGACGAATTCAGAGGCGATCCGCTACCAGTTTCTTTCTGAGCTCTGCAAAACGGAGAATTTGACTGAGTTCTGAGGTCGGACGATCACTGCACTCCGGCGGACATGACGGTGGTTGCTCACCGTCAAAATTGATCGAAAGCATCAATACAAGAATCGGAGAATCGAGCAATTGAGAGGATCGATCGGCGGAGATCCTAAAAATGTCGGTGGAGCCTCCTCCTTTCCAGGAAGCAGCGCGCTGCGAGGTCTGCAAATGCAGTTTCAACACCTTCCGGCGAAGGCATCATTGCCGATGCTGTGGAAGGACGTTGTGCCACGAGCATTCTTCTTTTCAAATGGCCTTGCCGCAGTTCGGTATTCAATCCTCTGTTAGAGTTTGTGGTGACTGTTTCAATGTCTCCTCTCAATCCAGAGAAGTTGGTCAACCACCATCGTTAGCTGTAGTCGATCAAGTTGCAGACACAGTTTCCAAACTAAACCTTGATGGGGATGTAAATTCTGAGCCTAAACCAGCTGTGGAGCATCAACCTGCGTTCGGCATTTCAGATTGCAAGTGTGGAATGCCATTATGTATTTGTGAAACTCCAGTCCAGTCTATGGAAACAGAAGCAGTTCCTTCACAGAAGAAAACGGCTTCCACCTCTACTCAGTACAATTCAAAACCAAAGAAGACTGATTCCAATCTAAGGAATAGAGGATCCACCTCCAACAGCAAGCTTCGGTATGTTAGCAATCTGTTTTATTCTAACAGGAATCTTGCAGCAGATGAATCGAGGATTAATTATGAAGCAAGTGGCGAGGCGGCGGTCTTTAATCAGACTGATATTGTTTTTGCCCTCATTGAAAGCGGGGCTAGCCTGGACTACAAAAATGCTCAAGGAGAAACGCCATTGGATTGTGCTCCAGCTTCTTTGCAATATAAGATACGAGAGAAGATGGGAGGGCAGTGAAGAAGGAGGAAGCAACTATCGACATAACCAGGGAGATGACATCCCATATTTTTCTAGTAAATACTTCTATAATCTCTGCACCAGAGTGCTTTACTTTTCTTTTTTTGTTCCCTTCTTTTTGATGTCTCATACTCTGGTAATGGCAGATTATCTGGCTGTCTCTGTAGAATCTCTCTTTCAACATAACTTTTCAGCCATCATATACCATAAATGGTTACATTAGGTTATCATTTTAGATATCCTCCGCAGTTAGTGTTGTTCCTAACTTGGATAGTCTTTGGTGTTTAATTTAGAGGCAGTTCGGGAGCTTAGTCGAAAAACTGTCGAAATAGGTAGAAGTAAATTTAGGTATCTCTCTCTCTCTATACACAGTAAGATCTTAGTTTGT ATGTCGGTGGAGCCTCCTCCTTTCCAGGAAGCAGCGCGCTGCGAGGTCTGCAAATGCAGTTTCAACACCTTCCGGCGAAGGCATCATTGCCGATGCTGTGGAAGGACGTTGTGCCACGAGCATTCTTCTTTTCAAATGGCCTTGCCGCAGTTCGGTATTCAATCCTCTGTTAGAGTTTGTGGTGACTGTTTCAATGTCTCCTCTCAATCCAGAGAAGTTGGTCAACCACCATCGTTAGCTGTAGTCGATCAAGTTGCAGACACAGTTTCCAAACTAAACCTTGATGGGGATGTAAATTCTGAGCCTAAACCAGCTGTGGAGCATCAACCTGCGTTCGGCATTTCAGATTGCAAGTGTGGAATGCCATTATGTATTTGTGAAACTCCAGTCCAGTCTATGGAAACAGAAGCAGTTCCTTCACAGAAGAAAACGGCTTCCACCTCTACTCAGTACAATTCAAAACCAAAGAAGACTGATTCCAATCTAAGGAATAGAGGATCCACCTCCAACAGCAAGCTTCGGTATGTTAGCAATCTGTTTTATTCTAACAGGAATCTTGCAGCAGATGAATCGAGGATTAATTATGAAGCAAGTGGCGAGGCGGCGGTCTTTAATCAGACTGATATTGTTTTTGCCCTCATTGAAAGCGGGGCTAGCCTGGACTACAAAAATGCTCAAGGAGAAACGCCATTGGATTGTGCTCCAGCTTCTTTGCAATATAAGATACGAGAGAAGATGGGAGGGCAGTGA MSVEPPPFQEAARCEVCKCSFNTFRRRHHCRCCGRTLCHEHSSFQMALPQFGIQSSVRVCGDCFNVSSQSREVGQPPSLAVVDQVADTVSKLNLDGDVNSEPKPAVEHQPAFGISDCKCGMPLCICETPVQSMETEAVPSQKKTASTSTQYNSKPKKTDSNLRNRGSTSNSKLRYVSNLFYSNRNLAADESRINYEASGEAAVFNQTDIVFALIESGASLDYKNAQGETPLDCAPASLQYKIREKMGGQ Homology
BLAST of Carg12925 vs. NCBI nr
Match: KAG7023732.1 (VPS27 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 503.1 bits (1294), Expect = 1.4e-138 Identity = 249/249 (100.00%), Postives = 249/249 (100.00%), Query Frame = 0
BLAST of Carg12925 vs. NCBI nr
Match: KAG6590065.1 (Lateral signaling target protein 2-like protein, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 456.8 bits (1174), Expect = 1.2e-124 Identity = 239/286 (83.57%), Postives = 239/286 (83.57%), Query Frame = 0
BLAST of Carg12925 vs. NCBI nr
Match: XP_022960668.1 (vacuolar protein sorting-associated protein 27-like isoform X1 [Cucurbita moschata]) HSP 1 Score: 454.9 bits (1169), Expect = 4.4e-124 Identity = 238/286 (83.22%), Postives = 239/286 (83.57%), Query Frame = 0
BLAST of Carg12925 vs. NCBI nr
Match: XP_023516961.1 (vacuolar protein sorting-associated protein 27-like isoform X1 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 454.1 bits (1167), Expect = 7.6e-124 Identity = 237/286 (82.87%), Postives = 239/286 (83.57%), Query Frame = 0
BLAST of Carg12925 vs. NCBI nr
Match: XP_022960669.1 (vacuolar protein sorting-associated protein 27-like isoform X2 [Cucurbita moschata]) HSP 1 Score: 448.4 bits (1152), Expect = 4.2e-122 Identity = 237/286 (82.87%), Postives = 238/286 (83.22%), Query Frame = 0
BLAST of Carg12925 vs. ExPASy Swiss-Prot
Match: Q17AN2 (Lateral signaling target protein 2 homolog OS=Aedes aegypti OX=7159 GN=AAEL005241 PE=3 SV=1) HSP 1 Score: 67.4 bits (163), Expect = 2.6e-10 Identity = 36/77 (46.75%), Postives = 42/77 (54.55%), Query Frame = 0
BLAST of Carg12925 vs. ExPASy Swiss-Prot
Match: Q755J9 (Vacuolar protein sorting-associated protein 27 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) OX=284811 GN=VPS27 PE=3 SV=1) HSP 1 Score: 67.4 bits (163), Expect = 2.6e-10 Identity = 27/64 (42.19%), Postives = 39/64 (60.94%), Query Frame = 0
BLAST of Carg12925 vs. ExPASy Swiss-Prot
Match: Q7QAJ2 (Lateral signaling target protein 2 homolog OS=Anopheles gambiae OX=7165 GN=AGAP003678 PE=3 SV=6) HSP 1 Score: 67.0 bits (162), Expect = 3.4e-10 Identity = 31/67 (46.27%), Postives = 39/67 (58.21%), Query Frame = 0
BLAST of Carg12925 vs. ExPASy Swiss-Prot
Match: B0WAQ0 (Lateral signaling target protein 2 homolog OS=Culex quinquefasciatus OX=7176 GN=CPIJ004116 PE=3 SV=1) HSP 1 Score: 67.0 bits (162), Expect = 3.4e-10 Identity = 36/77 (46.75%), Postives = 42/77 (54.55%), Query Frame = 0
BLAST of Carg12925 vs. ExPASy Swiss-Prot
Match: B4G2G5 (Lateral signaling target protein 2 homolog OS=Drosophila persimilis OX=7234 GN=GL23610 PE=3 SV=1) HSP 1 Score: 65.5 bits (158), Expect = 9.9e-10 Identity = 33/83 (39.76%), Postives = 45/83 (54.22%), Query Frame = 0
BLAST of Carg12925 vs. ExPASy TrEMBL
Match: A0A6J1H9N2 (vacuolar protein sorting-associated protein 27-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111461389 PE=4 SV=1) HSP 1 Score: 454.9 bits (1169), Expect = 2.1e-124 Identity = 238/286 (83.22%), Postives = 239/286 (83.57%), Query Frame = 0
BLAST of Carg12925 vs. ExPASy TrEMBL
Match: A0A6J1HBQ0 (vacuolar protein sorting-associated protein 27-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111461389 PE=4 SV=1) HSP 1 Score: 448.4 bits (1152), Expect = 2.0e-122 Identity = 237/286 (82.87%), Postives = 238/286 (83.22%), Query Frame = 0
BLAST of Carg12925 vs. ExPASy TrEMBL
Match: A0A6J1JJ55 (myotubularin-related protein 3-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111485580 PE=4 SV=1) HSP 1 Score: 446.4 bits (1147), Expect = 7.6e-122 Identity = 235/286 (82.17%), Postives = 235/286 (82.17%), Query Frame = 0
BLAST of Carg12925 vs. ExPASy TrEMBL
Match: A0A6J1JGT2 (myotubularin-related protein 3-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111485580 PE=4 SV=1) HSP 1 Score: 439.9 bits (1130), Expect = 7.2e-120 Identity = 234/286 (81.82%), Postives = 234/286 (81.82%), Query Frame = 0
BLAST of Carg12925 vs. ExPASy TrEMBL
Match: A0A5A7UKZ2 (Vacuolar protein sorting-associated protein 27 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G001170 PE=4 SV=1) HSP 1 Score: 418.7 bits (1075), Expect = 1.7e-113 Identity = 221/286 (77.27%), Postives = 227/286 (79.37%), Query Frame = 0
BLAST of Carg12925 vs. TAIR 10
Match: AT2G26210.1 (Ankyrin repeat family protein ) HSP 1 Score: 95.9 bits (237), Expect = 4.9e-20 Identity = 72/203 (35.47%), Postives = 99/203 (48.77%), Query Frame = 0
BLAST of Carg12925 vs. TAIR 10
Match: AT2G26210.2 (Ankyrin repeat family protein ) HSP 1 Score: 95.5 bits (236), Expect = 6.4e-20 Identity = 65/168 (38.69%), Postives = 85/168 (50.60%), Query Frame = 0
BLAST of Carg12925 vs. TAIR 10
Match: AT2G26210.3 (Ankyrin repeat family protein ) HSP 1 Score: 95.5 bits (236), Expect = 6.4e-20 Identity = 65/168 (38.69%), Postives = 85/168 (50.60%), Query Frame = 0
BLAST of Carg12925 vs. TAIR 10
Match: AT4G33240.1 (1-phosphatidylinositol-4-phosphate 5-kinases;zinc ion binding;1-phosphatidylinositol-3-phosphate 5-kinases ) HSP 1 Score: 50.1 bits (118), Expect = 3.1e-06 Identity = 32/127 (25.20%), Postives = 45/127 (35.43%), Query Frame = 0
BLAST of Carg12925 vs. TAIR 10
Match: AT4G33240.2 (1-phosphatidylinositol-4-phosphate 5-kinases;zinc ion binding;1-phosphatidylinositol-3-phosphate 5-kinases ) HSP 1 Score: 50.1 bits (118), Expect = 3.1e-06 Identity = 32/127 (25.20%), Postives = 45/127 (35.43%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|