Carg12894 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg12894
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	RING-type domain-containing protein
Location	Carg_Chr05: 10372902 .. 10376702 (-)
RNA-Seq Expression	Carg12894
Synteny	Carg12894

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CGTTCTCATTGTAAATCCTTGTCGGGAAGGGGCATGGAATTGCAGGGCACTGCGCCATTGGAGATGGAGACAAGCAGTTCCTCTTCCGACGATACGAACCCTTGCCCGATCTGCCTCGGACCCATAATTCAACCTTCCTATCTCGACAAATGCTTCCGTACGTCCTTTTTTTCTCTCAATCTGATTGTTCTTTCGTATTTCTTGAATTTTCCGGACATCTGAACGGATAATTAATTTAGAAATTTTGTTTGTTTGTATGAATTAGGGTTTTTCTTTTTCGTGTTCTTATGGTGATCGACTTGAAATTATCCCTTTATGTGTTACTGTATCATCAAAAGAACCACTCCGTTGTCCTTTTAGGGGATTTCGGCTTTTAGCTCTCCCCAGTTATTGAGGTTTCCGCTACTGTTCTTTATATTCGATGGAAGAAACTGATGATTATATTATCATGAAAGATAGAATTAACTGGTTTCATTGGGGATAAAGATAAATTAGCTAATTCTGTAGCTTTGGAGTGGACTTAAAGTTTTTCTGGAGATGCTCTATTCGATCCAATATTCAGTTCTTTAGTGATGTACGCTTTAGGCAAGCAATTTGTAGCGTATATAATGACATCTTCCTGTTAGAGAAAAACAGAAACAGCTGCGAGAGTGCTATGGATTTGAGAGATCCCACATCGGTTGGAGTGGGGAACGAAACATTCTTTATAATGGTGTGGAAACCTCTCCTTAGTAGACGCGTTTTTAAAACCTTGGGGGGAAAGCCCAAAGAGGATAGTATCTGCTAGCGGTGAGCTTGGACTGTTACAAATGGTATAAGAGCCAGACACCAGACGGTGTGCCAACAAGGATGCTAGGCCCCAAAGGGAGTGGATTATGAAATGCCACATCGATTGGAGAGGGGAACGAATGTCAGCGAGGACGTTGGGCCCGGAATGGGGGGTGGATTGTGAGATCCCACATCGGTTGGAGAGGCAACGAAGCATTCTTTATAAGGGTGTGGAGACCTCTCCTTAGCATATGCGTTTTAAAAACCTTGAGGGGAAGCTCGAAAGGGAAAAGCCCAAAGAGGACAATATATGTTAACGGTAGGCTTGGGCCGTTACAGGATTTCTTTGATATGATGAATGTACTCAAAGATAAACTCCGTTAACGTCTTTCAGATGAATATCTTCATTTAATTTACTTTTAATGTACTTCCTTTTGTAAGTTTGGGTGAACTTGATCATTTAATTTGCTCTAACGAAATTATTCGATCATTCATGTTAAGTACGATATACTATTTAGCAAAAAGGAATGTCAACAAACTTCGCTAAGGAGTTCGAAAGCTTTTAATTCTATTTCTCTGTCATGCAGATAAATTTTGTTACAATTGCATTGTGCAATGGACTAAAGTGGTTTCTGGAAAGCACTCTTGCACACTTTCATCCATTAAGTGCCCTTTATGCAAGGTACTATTTTCTTCCCCTGTTAATCTTGTCTTAGTTTAGCATTCCATACTCTGTATAGCATTTCTTATTTTTTACATTTAATCAACAGACAGAAAGTCCTTCTATAATACATGGATTAGATGGACATTGTTTCCAAAGACATTATGTTAATCAGGATTTTCAGGATAGGTATCTTCCTGTTGATACTTCCCCTAGGTTTTCGTGTTATATTCTTATTTTCTGTGTTTTAATTGACTATGGATTATAATTGATGTTATTTGCAGCTTTATCTTATCAAAAGCTCAAAAGTATAGATTACAGTGCTATTATACTGAACCAGGTTCGTTTCGGTGTTGATGCTCCAACATTTACATCATGATTACTTGGATTAATGAATTTCGCTGTACGTGTAGGTTTCTTGGATGACATATTCAGTGTAAAGAAGTATTGGAAGTTACGGAAGTATCTACAGGCAAACCAGTGGCTCGAAGTTTGGTTGAAAAGGGAACTTCAAGCTTTGATTCAGGTTCCTGACTGTGTTTCTTACATTGCATTTATACTTCTATGGGTGCTGCTTCCTTTGCCCCCTTCTTTGTCCTGGAGAATGGTTTACACCCAATGTCAAACAAAATTCCCTAGACCAAAGAGGCGGGTGGAAAGGAAGAAAGCTTTCTGTTCCTCATTCCCAGGTTATCCTATGGTCGGATTACCAGTAATTAATGAAATTCTTAGTTCCAAAATGGGACGTGGGCATGTAAAAAGGTAGGAAAGGGATGGGGTTTCTCTCGTTTATGGCACAATAACCCCTAGCAGGTTTCACTCCCTCTGATTGAAGATTTGAGAACTCTGTTTATGAGATCCCACGTCAGGTGGGGAGGAGAACGAAGCATTTCTTATAAGAGTGTGAAACCTCTTCGTAGTAGACGCGTTTTAAAATTGTGAGGTTGACTGCGATACAGAACGGGCTAAAGCGGACAATATCTGCTAGCAGTGGGCTTGGGCTGTTACAAATGGTATCAGAGCCAGACACTGGGCAGTGTGCCATCGAGGACGCTGGACCCCAAGGAGGGTGGATTGTGAGATCCCACGTCAGTTGGAGAGAGGAACGAAGCATTCCTTATAAGAGTGTGGAAACCTCTCCCTAGTAGACATGCTTTAAAATCGTGAGGCTGACGGTGATACGTAACGGGCTAAAGCAGGCAATATTTGCTAGTGGTGGCTTGGGCTGTTACATAGTTTTTTATTTCAATGGTTGAGAAAAACTGTGTATTGTGGATGTCGGTGTTGGTGTTGTGGCTGTCGAATGTAGGCAAGATGAGGTAAAGATATGTCTGTAGACTGTGGGGATGGATTACTGTAGACTAAACAGGATAGCAGTAGCAGGTGTATGATACCGTTTCTATGGCACAGTTTCTTGATTGATCCATTCTGTTCTTATGTATTACAGTTCCTTATGGATGATGACTGATAGTCTCCTTCCCTTTTTACAGGAAGAAGATGTTGACATAATTATGCACCACCTGCTTGGTTCAATTCATTCATTTTTTAGTAGGTAATAACCATCCACAATACCCTGCTCCCATATACCTATCATTAAACGTCATTTTTATGCTTTTCGTTCGGGTTTGGCTGGTAGAATACCCCTAGTCACTATGACTGTAACAGCCCAAGGCTACCGCTAGCAGATATTGTCCCCTTTGGTCTGTTACATATCGCCATCAACACGGTTTTAAAATGCGTTTTTAAAAAGATGTGAAGCTGATGACGATACGTAACGGGCCAAAGCAGACAATATCTGCTAACGGTGAGTTTGAGCTGTTACAAATGGTATCAGAACTAAACACTGGGCGTTGTGCCAGCGAGGACGTTGGGCCCTGAAGGGGGTGGATTGTGAGATCTCACTTCGGTTGGAGAGGGGAACGAAACATTTCTTATAAGAGTGTAGAAACCTCTTCCTAGTAGATGCGTTTTAAAACTATGGAATTAAGTTGTTACAATCATCTATCCACATGAATGTAAATATGCATGGTACCTGATTACACTCTGAAACCTGCTTCTTGTTCTTTGTTTTTCCTCAAAGAAATGAACCTAGGTATCAAACAGAAACTCCTCAGCTGAAGAGGGAAAGGTTTAACAGCATGATCCTTGATGCAGCGAAGCCATTCCTGTCAGAAAGAGCGGACCGGTTCGTGCTCGAGTTGGAGCTGTTTCTTGCTTCAGGTTTAAACATCGAAGCCTATGATTCGGTTTACTTGCAACGGCTGGGTTGGAACAAGCCTGTCGGACCCAGCATGGCGGTAGAAAATCTTGGACACGAACCTGTAACTCCATACTTGTTTATCTTTGACTATGACCCTGATGATGGTGATTAA

mRNA sequence

CGTTCTCATTGTAAATCCTTGTCGGGAAGGGGCATGGAATTGCAGGGCACTGCGCCATTGGAGATGGAGACAAGCAGTTCCTCTTCCGACGATACGAACCCTTGCCCGATCTGCCTCGGACCCATAATTCAACCTTCCTATCTCGACAAATGCTTCCATAAATTTTGTTACAATTGCATTGTGCAATGGACTAAAGTGGTTTCTGGAAAGCACTCTTGCACACTTTCATCCATTAAGTGCCCTTTATGCAAGACAGAAAGTCCTTCTATAATACATGGATTAGATGGACATTGTTTCCAAAGACATTATGTTAATCAGGATTTTCAGGATAGCTTTATCTTATCAAAAGCTCAAAAGTATAGATTACAGTGCTATTATACTGAACCAGGTTTCTTGGATGACATATTCAGTGTAAAGAAGTATTGGAAGTTACGGAAGTATCTACAGGCAAACCAGTGGCTCGAAGTTTGGTTGAAAAGGGAACTTCAAGCTTTGATTCAGGAAGAAGATGTTGACATAATTATGCACCACCTGCTTGGTTCAATTCATTCATTTTTTAGTAGAAATGAACCTAGGTATCAAACAGAAACTCCTCAGCTGAAGAGGGAAAGGTTTAACAGCATGATCCTTGATGCAGCGAAGCCATTCCTGTCAGAAAGAGCGGACCGGTTCGTGCTCGAGTTGGAGCTGTTTCTTGCTTCAGGTTTAAACATCGAAGCCTATGATTCGGTTTACTTGCAACGGCTGGGTTGGAACAAGCCTGTCGGACCCAGCATGGCGGTAGAAAATCTTGGACACGAACCTGTAACTCCATACTTGTTTATCTTTGACTATGACCCTGATGATGGTGATTAA

Coding sequence (CDS)

ATGGAATTGCAGGGCACTGCGCCATTGGAGATGGAGACAAGCAGTTCCTCTTCCGACGATACGAACCCTTGCCCGATCTGCCTCGGACCCATAATTCAACCTTCCTATCTCGACAAATGCTTCCATAAATTTTGTTACAATTGCATTGTGCAATGGACTAAAGTGGTTTCTGGAAAGCACTCTTGCACACTTTCATCCATTAAGTGCCCTTTATGCAAGACAGAAAGTCCTTCTATAATACATGGATTAGATGGACATTGTTTCCAAAGACATTATGTTAATCAGGATTTTCAGGATAGCTTTATCTTATCAAAAGCTCAAAAGTATAGATTACAGTGCTATTATACTGAACCAGGTTTCTTGGATGACATATTCAGTGTAAAGAAGTATTGGAAGTTACGGAAGTATCTACAGGCAAACCAGTGGCTCGAAGTTTGGTTGAAAAGGGAACTTCAAGCTTTGATTCAGGAAGAAGATGTTGACATAATTATGCACCACCTGCTTGGTTCAATTCATTCATTTTTTAGTAGAAATGAACCTAGGTATCAAACAGAAACTCCTCAGCTGAAGAGGGAAAGGTTTAACAGCATGATCCTTGATGCAGCGAAGCCATTCCTGTCAGAAAGAGCGGACCGGTTCGTGCTCGAGTTGGAGCTGTTTCTTGCTTCAGGTTTAAACATCGAAGCCTATGATTCGGTTTACTTGCAACGGCTGGGTTGGAACAAGCCTGTCGGACCCAGCATGGCGGTAGAAAATCTTGGACACGAACCTGTAACTCCATACTTGTTTATCTTTGACTATGACCCTGATGATGGTGATTAA

Protein sequence

MELQGTAPLEMETSSSSSDDTNPCPICLGPIIQPSYLDKCFHKFCYNCIVQWTKVVSGKHSCTLSSIKCPLCKTESPSIIHGLDGHCFQRHYVNQDFQDSFILSKAQKYRLQCYYTEPGFLDDIFSVKKYWKLRKYLQANQWLEVWLKRELQALIQEEDVDIIMHHLLGSIHSFFSRNEPRYQTETPQLKRERFNSMILDAAKPFLSERADRFVLELELFLASGLNIEAYDSVYLQRLGWNKPVGPSMAVENLGHEPVTPYLFIFDYDPDDGD

Homology

[Close]

BLAST of Carg12894 vs. NCBI nr
Match: KAG7030255.1 (E3 ubiquitin-protein ligase Topors [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 576.2 bits (1484), Expect = 1.4e-160
Identity = 273/273 (100.00%), Postives = 273/273 (100.00%), Query Frame = 0


Query: 1   MELQGTAPLEMETSSSSSDDTNPCPICLGPIIQPSYLDKCFHKFCYNCIVQWTKVVSGKH 60
           MELQGTAPLEMETSSSSSDDTNPCPICLGPIIQPSYLDKCFHKFCYNCIVQWTKVVSGKH
Sbjct: 1   MELQGTAPLEMETSSSSSDDTNPCPICLGPIIQPSYLDKCFHKFCYNCIVQWTKVVSGKH 60

Query: 61  SCTLSSIKCPLCKTESPSIIHGLDGHCFQRHYVNQDFQDSFILSKAQKYRLQCYYTEPGF 120
           SCTLSSIKCPLCKTESPSIIHGLDGHCFQRHYVNQDFQDSFILSKAQKYRLQCYYTEPGF
Sbjct: 61  SCTLSSIKCPLCKTESPSIIHGLDGHCFQRHYVNQDFQDSFILSKAQKYRLQCYYTEPGF 120

Query: 121 LDDIFSVKKYWKLRKYLQANQWLEVWLKRELQALIQEEDVDIIMHHLLGSIHSFFSRNEP 180
           LDDIFSVKKYWKLRKYLQANQWLEVWLKRELQALIQEEDVDIIMHHLLGSIHSFFSRNEP
Sbjct: 121 LDDIFSVKKYWKLRKYLQANQWLEVWLKRELQALIQEEDVDIIMHHLLGSIHSFFSRNEP 180

Query: 181 RYQTETPQLKRERFNSMILDAAKPFLSERADRFVLELELFLASGLNIEAYDSVYLQRLGW 240
           RYQTETPQLKRERFNSMILDAAKPFLSERADRFVLELELFLASGLNIEAYDSVYLQRLGW
Sbjct: 181 RYQTETPQLKRERFNSMILDAAKPFLSERADRFVLELELFLASGLNIEAYDSVYLQRLGW 240

Query: 241 NKPVGPSMAVENLGHEPVTPYLFIFDYDPDDGD 274
           NKPVGPSMAVENLGHEPVTPYLFIFDYDPDDGD
Sbjct: 241 NKPVGPSMAVENLGHEPVTPYLFIFDYDPDDGD 273

[Close]

BLAST of Carg12894 vs. NCBI nr
Match: XP_022946760.1 (uncharacterized protein LOC111450733 [Cucurbita moschata])

HSP 1 Score: 572.8 bits (1475), Expect = 1.6e-159
Identity = 271/273 (99.27%), Postives = 273/273 (100.00%), Query Frame = 0


Query: 1   MELQGTAPLEMETSSSSSDDTNPCPICLGPIIQPSYLDKCFHKFCYNCIVQWTKVVSGKH 60
           MELQGTAPLEMETSSSSSDDTNPCPICLGPIIQPSYLDKCFHKFCYNCIVQWTKVVSGKH
Sbjct: 1   MELQGTAPLEMETSSSSSDDTNPCPICLGPIIQPSYLDKCFHKFCYNCIVQWTKVVSGKH 60

Query: 61  SCTLSSIKCPLCKTESPSIIHGLDGHCFQRHYVNQDFQDSFILSKAQKYRLQCYYTEPGF 120
           SCTLSSIKCPLCKTESPSIIHGLDGHCFQRHYVNQDFQDSFILSKAQKYRLQCYYTEPGF
Sbjct: 61  SCTLSSIKCPLCKTESPSIIHGLDGHCFQRHYVNQDFQDSFILSKAQKYRLQCYYTEPGF 120

Query: 121 LDDIFSVKKYWKLRKYLQANQWLEVWLKRELQALIQEEDVDIIMHHLLGSIHSFFSRNEP 180
           LDDIFSV+KYWKLRKYLQANQWLEVWLKRELQALIQEEDVDIIMHHLLGSIHSFFSRNEP
Sbjct: 121 LDDIFSVQKYWKLRKYLQANQWLEVWLKRELQALIQEEDVDIIMHHLLGSIHSFFSRNEP 180

Query: 181 RYQTETPQLKRERFNSMILDAAKPFLSERADRFVLELELFLASGLNIEAYDSVYLQRLGW 240
           RYQTETPQLKRERFNSMILDAAKPFLSERADRFVLELELFLASGLNIEAYDSVYLQRLGW
Sbjct: 181 RYQTETPQLKRERFNSMILDAAKPFLSERADRFVLELELFLASGLNIEAYDSVYLQRLGW 240

Query: 241 NKPVGPSMAVENLGHEPVTPYLFIFDYDPDDGD 274
           NKPVGPSMAVE+LGHEPVTPYLFIFDYDPDDGD
Sbjct: 241 NKPVGPSMAVEDLGHEPVTPYLFIFDYDPDDGD 273

[Close]

BLAST of Carg12894 vs. NCBI nr
Match: XP_023545827.1 (uncharacterized protein LOC111805146 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 571.6 bits (1472), Expect = 3.6e-159
Identity = 270/273 (98.90%), Postives = 273/273 (100.00%), Query Frame = 0


Query: 1   MELQGTAPLEMETSSSSSDDTNPCPICLGPIIQPSYLDKCFHKFCYNCIVQWTKVVSGKH 60
           MELQGTAPLEMETSSSSSDDTNPCPICLGPIIQPSYLDKCFHKFCYNCIVQWTKVVSGKH
Sbjct: 1   MELQGTAPLEMETSSSSSDDTNPCPICLGPIIQPSYLDKCFHKFCYNCIVQWTKVVSGKH 60

Query: 61  SCTLSSIKCPLCKTESPSIIHGLDGHCFQRHYVNQDFQDSFILSKAQKYRLQCYYTEPGF 120
           SCTLSSIKCPLCKTESPSIIHGLDGHCFQRHYVNQDFQDSFILSKAQKYRLQCYYTEPGF
Sbjct: 61  SCTLSSIKCPLCKTESPSIIHGLDGHCFQRHYVNQDFQDSFILSKAQKYRLQCYYTEPGF 120

Query: 121 LDDIFSVKKYWKLRKYLQANQWLEVWLKRELQALIQEEDVDIIMHHLLGSIHSFFSRNEP 180
           LDDIFSV+KYWKLRKYLQANQWLEVWLKRELQALIQEEDVDIIMHHLLGSIHSFFSRNEP
Sbjct: 121 LDDIFSVQKYWKLRKYLQANQWLEVWLKRELQALIQEEDVDIIMHHLLGSIHSFFSRNEP 180

Query: 181 RYQTETPQLKRERFNSMILDAAKPFLSERADRFVLELELFLASGLNIEAYDSVYLQRLGW 240
           RYQTETPQLKR+RFNSMILDAAKPFLSERADRFVLELELFLASGLNIEAYDSVYLQRLGW
Sbjct: 181 RYQTETPQLKRDRFNSMILDAAKPFLSERADRFVLELELFLASGLNIEAYDSVYLQRLGW 240

Query: 241 NKPVGPSMAVENLGHEPVTPYLFIFDYDPDDGD 274
           NKPVGPSMAVE+LGHEPVTPYLFIFDYDPDDGD
Sbjct: 241 NKPVGPSMAVEDLGHEPVTPYLFIFDYDPDDGD 273

[Close]

BLAST of Carg12894 vs. NCBI nr
Match: XP_022999126.1 (uncharacterized protein LOC111493604 [Cucurbita maxima])

HSP 1 Score: 560.8 bits (1444), Expect = 6.3e-156
Identity = 266/273 (97.44%), Postives = 270/273 (98.90%), Query Frame = 0


Query: 1   MELQGTAPLEMETSSSSSDDTNPCPICLGPIIQPSYLDKCFHKFCYNCIVQWTKVVSGKH 60
           MELQGTAPLEMETSSSSSDDTNPCPICLGPIIQPSYLDKCFHKFCYNCIVQWTKVVSGKH
Sbjct: 1   MELQGTAPLEMETSSSSSDDTNPCPICLGPIIQPSYLDKCFHKFCYNCIVQWTKVVSGKH 60

Query: 61  SCTLSSIKCPLCKTESPSIIHGLDGHCFQRHYVNQDFQDSFILSKAQKYRLQCYYTEPGF 120
           SCTLSSIKCPLCKTESPSIIHGLDGHCFQRHYVNQDFQDSFILSKAQKYRLQCYYTEPGF
Sbjct: 61  SCTLSSIKCPLCKTESPSIIHGLDGHCFQRHYVNQDFQDSFILSKAQKYRLQCYYTEPGF 120

Query: 121 LDDIFSVKKYWKLRKYLQANQWLEVWLKRELQALIQEEDVDIIMHHLLGSIHSFFSRNEP 180
           LDDIF+V+KYWKLRKYLQANQWLEVWLKRELQALIQEEDVDIIMHHLLGSIHSFFSRNE 
Sbjct: 121 LDDIFNVQKYWKLRKYLQANQWLEVWLKRELQALIQEEDVDIIMHHLLGSIHSFFSRNEH 180

Query: 181 RYQTETPQLKRERFNSMILDAAKPFLSERADRFVLELELFLASGLNIEAYDSVYLQRLGW 240
           RYQTETPQLKR+RFNSMILDAAKPFLSERADRFVLELELFLASGLNIEAYDSVYLQRLGW
Sbjct: 181 RYQTETPQLKRDRFNSMILDAAKPFLSERADRFVLELELFLASGLNIEAYDSVYLQRLGW 240

Query: 241 NKPVGPSMAVENLGHEPVTPYLFIFDYDPDDGD 274
           NKP GPSMAVE+LG EPVTPYLFIFDYDPDDGD
Sbjct: 241 NKPFGPSMAVEDLGLEPVTPYLFIFDYDPDDGD 273

[Close]

BLAST of Carg12894 vs. NCBI nr
Match: XP_038889020.1 (uncharacterized protein LOC120078783 isoform X1 [Benincasa hispida])

HSP 1 Score: 505.4 bits (1300), Expect = 3.1e-139
Identity = 239/272 (87.87%), Postives = 255/272 (93.75%), Query Frame = 0


Query: 1   MELQGTAPLEMETSSSSSDDTNPCPICLGPIIQPSYLDKCFHKFCYNCIVQWTKVVSGKH 60
           MELQ TAP+E  TSSS SDDTNPCPICLG IIQPSYLDKCFHKFCYNCI+QWTKVVSGKH
Sbjct: 6   MELQSTAPVETATSSSFSDDTNPCPICLGLIIQPSYLDKCFHKFCYNCILQWTKVVSGKH 65

Query: 61  SCTLSSIKCPLCKTESPSIIHGLDGHCFQRHYVNQDFQDSFILSKAQKYRLQCYYTEPGF 120
           SC LSSIKCPLCKTES SIIHGLDGHC QRHYVN+DFQDSFILSKA KYRLQCYYTEPGF
Sbjct: 66  SCMLSSIKCPLCKTESSSIIHGLDGHCLQRHYVNRDFQDSFILSKAHKYRLQCYYTEPGF 125

Query: 121 LDDIFSVKKYWKLRKYLQANQWLEVWLKRELQALIQEEDVDIIMHHLLGSIHSFFSRNEP 180
           LDDIF+V++YWKLRKYLQANQWLEVWLKRELQALIQEED+DIIMHHLLG I+SFFSRNEP
Sbjct: 126 LDDIFNVQRYWKLRKYLQANQWLEVWLKRELQALIQEEDIDIIMHHLLGFINSFFSRNEP 185

Query: 181 RYQTETPQLKRERFNSMILDAAKPFLSERADRFVLELELFLASGLNIEAYDSVYLQRLGW 240
           RYQTETP+LKRE FN M+LDAAKPFLS RADRFVLELELFLASGLNIEAYDSVYLQRLGW
Sbjct: 186 RYQTETPELKRETFNRMVLDAAKPFLSARADRFVLELELFLASGLNIEAYDSVYLQRLGW 245

Query: 241 NKPVGPSMAV-ENLGHEPVTPYLFIFDYDPDD 272
           N+PV P MA+ E+LG +PVTPYL+IF+YDPDD
Sbjct: 246 NEPVVPIMAIKEDLGLKPVTPYLYIFEYDPDD 277

[Close]

BLAST of Carg12894 vs. ExPASy Swiss-Prot
Match: Q80Z37 (E3 ubiquitin-protein ligase Topors OS=Mus musculus OX=10090 GN=Topors PE=1 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 4.4e-11
Identity = 35/113 (30.97%), Postives = 57/113 (50.44%), Query Frame = 0


Query: 5   GTAPLEMETSSSSSDDTNPCPICLGPIIQPSYLDKCFHKFCYNCIVQWTKVVSGKHSCTL 64
           GT+ L+    + +S D+  CPICL      SYLD+C HKFC+ C+ +W+K          
Sbjct: 86  GTSKLQQTVPADASPDSK-CPICLDRFDNVSYLDRCLHKFCFRCVQEWSK---------- 145

Query: 65  SSIKCPLCKTESPSIIHGLDGH-CFQRHYVNQDFQDSFILSKAQKYRLQCYYT 117
           +  +CPLCK    SI H +     F+ + +   +  SF   + +++R +   T
Sbjct: 146 NKAECPLCKQPFDSIFHSVRAEDDFKEYVLRPSYNGSFTNPEVRRFRYRTTMT 187

[Close]

BLAST of Carg12894 vs. ExPASy Swiss-Prot
Match: Q9NS56 (E3 ubiquitin-protein ligase Topors OS=Homo sapiens OX=9606 GN=TOPORS PE=1 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 2.2e-10
Identity = 33/99 (33.33%), Postives = 51/99 (51.52%), Query Frame = 0


Query: 5   GTAPLEMETSSSSSDDTNPCPICLGPIIQPSYLDKCFHKFCYNCIVQWTKVVSGKHSCTL 64
           GT+ L+    + +S D+  CPICL      SYLD+C HKFC+ C+ +W+K          
Sbjct: 85  GTSKLQQTVPADASPDSK-CPICLDRFDNVSYLDRCLHKFCFRCVQEWSK---------- 144

Query: 65  SSIKCPLCKTESPSIIHGLDGH-CFQRHYVNQDFQDSFI 103
           +  +CPLCK    SI H +     F+ + +   +  SF+
Sbjct: 145 NKAECPLCKQPFDSIFHSVRAEDDFKEYVLRPSYNGSFV 172

[Close]

BLAST of Carg12894 vs. ExPASy Swiss-Prot
Match: P29129 (E3 ubiquitin-protein ligase ICP0 OS=Suid herpesvirus 1 (strain Indiana-Funkhauser / Becker) OX=31523 GN=EP0 PE=2 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 1.6e-05
Identity = 24/61 (39.34%), Postives = 30/61 (49.18%), Query Frame = 0


Query: 24 CPICLGPIIQPSYLDKCFHKFCYNCIVQWTKVVSGKHSCTLSSIKCPLCKTESPSIIHGL 83
          CPICL      +    C HKFC +CI +W          TL+S  CPLC     SI+H +
Sbjct: 46 CPICLDVAATEAQTLPCMHKFCLDCIQRW----------TLTSTACPLCNARVTSILHHV 96

Query: 84 D 85
          D
Sbjct: 106 D 96

[Close]

BLAST of Carg12894 vs. ExPASy TrEMBL
Match: A0A6J1G4Z2 (uncharacterized protein LOC111450733 OS=Cucurbita moschata OX=3662 GN=LOC111450733 PE=4 SV=1)

HSP 1 Score: 572.8 bits (1475), Expect = 7.8e-160
Identity = 271/273 (99.27%), Postives = 273/273 (100.00%), Query Frame = 0


Query: 1   MELQGTAPLEMETSSSSSDDTNPCPICLGPIIQPSYLDKCFHKFCYNCIVQWTKVVSGKH 60
           MELQGTAPLEMETSSSSSDDTNPCPICLGPIIQPSYLDKCFHKFCYNCIVQWTKVVSGKH
Sbjct: 1   MELQGTAPLEMETSSSSSDDTNPCPICLGPIIQPSYLDKCFHKFCYNCIVQWTKVVSGKH 60

Query: 61  SCTLSSIKCPLCKTESPSIIHGLDGHCFQRHYVNQDFQDSFILSKAQKYRLQCYYTEPGF 120
           SCTLSSIKCPLCKTESPSIIHGLDGHCFQRHYVNQDFQDSFILSKAQKYRLQCYYTEPGF
Sbjct: 61  SCTLSSIKCPLCKTESPSIIHGLDGHCFQRHYVNQDFQDSFILSKAQKYRLQCYYTEPGF 120

Query: 121 LDDIFSVKKYWKLRKYLQANQWLEVWLKRELQALIQEEDVDIIMHHLLGSIHSFFSRNEP 180
           LDDIFSV+KYWKLRKYLQANQWLEVWLKRELQALIQEEDVDIIMHHLLGSIHSFFSRNEP
Sbjct: 121 LDDIFSVQKYWKLRKYLQANQWLEVWLKRELQALIQEEDVDIIMHHLLGSIHSFFSRNEP 180

Query: 181 RYQTETPQLKRERFNSMILDAAKPFLSERADRFVLELELFLASGLNIEAYDSVYLQRLGW 240
           RYQTETPQLKRERFNSMILDAAKPFLSERADRFVLELELFLASGLNIEAYDSVYLQRLGW
Sbjct: 181 RYQTETPQLKRERFNSMILDAAKPFLSERADRFVLELELFLASGLNIEAYDSVYLQRLGW 240

Query: 241 NKPVGPSMAVENLGHEPVTPYLFIFDYDPDDGD 274
           NKPVGPSMAVE+LGHEPVTPYLFIFDYDPDDGD
Sbjct: 241 NKPVGPSMAVEDLGHEPVTPYLFIFDYDPDDGD 273

[Close]

BLAST of Carg12894 vs. ExPASy TrEMBL
Match: A0A6J1KC78 (uncharacterized protein LOC111493604 OS=Cucurbita maxima OX=3661 GN=LOC111493604 PE=4 SV=1)

HSP 1 Score: 560.8 bits (1444), Expect = 3.0e-156
Identity = 266/273 (97.44%), Postives = 270/273 (98.90%), Query Frame = 0


Query: 1   MELQGTAPLEMETSSSSSDDTNPCPICLGPIIQPSYLDKCFHKFCYNCIVQWTKVVSGKH 60
           MELQGTAPLEMETSSSSSDDTNPCPICLGPIIQPSYLDKCFHKFCYNCIVQWTKVVSGKH
Sbjct: 1   MELQGTAPLEMETSSSSSDDTNPCPICLGPIIQPSYLDKCFHKFCYNCIVQWTKVVSGKH 60

Query: 61  SCTLSSIKCPLCKTESPSIIHGLDGHCFQRHYVNQDFQDSFILSKAQKYRLQCYYTEPGF 120
           SCTLSSIKCPLCKTESPSIIHGLDGHCFQRHYVNQDFQDSFILSKAQKYRLQCYYTEPGF
Sbjct: 61  SCTLSSIKCPLCKTESPSIIHGLDGHCFQRHYVNQDFQDSFILSKAQKYRLQCYYTEPGF 120

Query: 121 LDDIFSVKKYWKLRKYLQANQWLEVWLKRELQALIQEEDVDIIMHHLLGSIHSFFSRNEP 180
           LDDIF+V+KYWKLRKYLQANQWLEVWLKRELQALIQEEDVDIIMHHLLGSIHSFFSRNE 
Sbjct: 121 LDDIFNVQKYWKLRKYLQANQWLEVWLKRELQALIQEEDVDIIMHHLLGSIHSFFSRNEH 180

Query: 181 RYQTETPQLKRERFNSMILDAAKPFLSERADRFVLELELFLASGLNIEAYDSVYLQRLGW 240
           RYQTETPQLKR+RFNSMILDAAKPFLSERADRFVLELELFLASGLNIEAYDSVYLQRLGW
Sbjct: 181 RYQTETPQLKRDRFNSMILDAAKPFLSERADRFVLELELFLASGLNIEAYDSVYLQRLGW 240

Query: 241 NKPVGPSMAVENLGHEPVTPYLFIFDYDPDDGD 274
           NKP GPSMAVE+LG EPVTPYLFIFDYDPDDGD
Sbjct: 241 NKPFGPSMAVEDLGLEPVTPYLFIFDYDPDDGD 273

[Close]

BLAST of Carg12894 vs. ExPASy TrEMBL
Match: A0A6J1DAB4 (uncharacterized protein LOC111018833 OS=Momordica charantia OX=3673 GN=LOC111018833 PE=4 SV=1)

HSP 1 Score: 489.6 bits (1259), Expect = 8.6e-135
Identity = 231/274 (84.31%), Postives = 255/274 (93.07%), Query Frame = 0


Query: 1   MELQGTAPLEMETSSSSSDDTNPCPICLGPIIQPSYLDKCFHKFCYNCIVQWTKVVSGKH 60
           MELQ TA  EMET+SSS DDTNPCPICLG II+PSYLDKCFHKFCYNCIVQWTKVVSGK 
Sbjct: 6   MELQSTAQKEMETASSSYDDTNPCPICLGSIIRPSYLDKCFHKFCYNCIVQWTKVVSGKR 65

Query: 61  SCTLSSIKCPLCKTESPSIIHGLDGHCFQRHYVNQDFQDSFILSKAQKYRLQCYYTEPGF 120
           SC LS IKCPLCKTES SIIHGLDGHCFQRHYVNQDFQDSFILSKA KYRLQCYYTEPGF
Sbjct: 66  SCILSPIKCPLCKTESSSIIHGLDGHCFQRHYVNQDFQDSFILSKAHKYRLQCYYTEPGF 125

Query: 121 LDDIFSVKKYWKLRKYLQANQWLEVWLKRELQALIQEEDVDIIMHHLLGSIHSFFSRNEP 180
           L+DIF+V++YWKLRKYLQANQWLEVWLKRELQALIQEEDVDIIMHHLLG I+ FFSRNE 
Sbjct: 126 LEDIFNVQRYWKLRKYLQANQWLEVWLKRELQALIQEEDVDIIMHHLLGLINPFFSRNEQ 185

Query: 181 RYQTETPQLKRERFNSMILDAAKPFLSERADRFVLELELFLASGLNIEAYDSVYLQRLGW 240
           +YQTE+P++K+E+F+S++ DAAKPFLS RADRFV ELELFLASGLNIEAYDSVYLQRLGW
Sbjct: 186 KYQTESPEVKQEKFSSIVHDAAKPFLSARADRFVHELELFLASGLNIEAYDSVYLQRLGW 245

Query: 241 NKPVGPSMAV-ENLGHEPVTPYLFIFDYDPDDGD 274
           ++PV PS+A+ E+LG +PVTPYL+IFDYDPDDG+
Sbjct: 246 SEPVVPSVAIKEDLGLKPVTPYLYIFDYDPDDGE 279

[Close]

BLAST of Carg12894 vs. ExPASy TrEMBL
Match: A0A0A0LLN5 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G021620 PE=4 SV=1)

HSP 1 Score: 481.5 bits (1238), Expect = 2.4e-132
Identity = 230/274 (83.94%), Postives = 248/274 (90.51%), Query Frame = 0


Query: 1   MELQGTAPLEMETSSSSSDDTNPCPICLGPIIQPSYLDKCFHKFCYNCIVQWTKVVSGKH 60
           MELQ TA +EMET +S+SD TNPCPICLGPI Q SYLDKCFH FCYNCIVQWTKVVSGK 
Sbjct: 6   MELQSTASMEMETRTSTSDYTNPCPICLGPINQSSYLDKCFHNFCYNCIVQWTKVVSGKR 65

Query: 61  SCTLSSIKCPLCKTESPSIIHGLDGHCFQRHYVNQDFQDSFILSKAQKYRLQCYYTEPGF 120
           SCTLSSIKCPLCKTES SIIHGLDGH FQRHYVN DFQDSFILSKA +YRLQCYYTEPGF
Sbjct: 66  SCTLSSIKCPLCKTESSSIIHGLDGHNFQRHYVNPDFQDSFILSKAHRYRLQCYYTEPGF 125

Query: 121 LDDIFSVKKYWKLRKYLQANQWLEVWLKRELQALIQEEDVDIIMHHLLGSIHSFFSRNEP 180
           L+DIF V++YWKL+KYLQANQWLEVWLKRELQALIQEEDVDIIMHH LG I+SFF RNEP
Sbjct: 126 LNDIFDVQRYWKLQKYLQANQWLEVWLKRELQALIQEEDVDIIMHHFLGLINSFFRRNEP 185

Query: 181 RYQTETPQLKRERFNSMILDAAKPFLSERADRFVLELELFLASGLNIEAYDSVYLQRLGW 240
            YQTETP+LKR+RF+  ILDAAKPFLS RADRF+LELELFLASGLNIEAYDSVYLQRLGW
Sbjct: 186 EYQTETPELKRKRFSQTILDAAKPFLSARADRFILELELFLASGLNIEAYDSVYLQRLGW 245

Query: 241 NKPVGPSMA-VENLGHEPVTPYLFIFDYDPDDGD 274
           NKP+ PS+A  E+LG + VTPYL+IFD DPDDGD
Sbjct: 246 NKPIVPSVANEEDLGLKSVTPYLYIFDCDPDDGD 279

[Close]

BLAST of Carg12894 vs. ExPASy TrEMBL
Match: A0A5D3D454 (RING zinc finger protein-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold456G00310 PE=4 SV=1)

HSP 1 Score: 464.5 bits (1194), Expect = 3.0e-127
Identity = 222/272 (81.62%), Postives = 245/272 (90.07%), Query Frame = 0


Query: 1   MELQGTAPLEMETSSSSSDDTNPCPICLGPIIQPSYLDKCFHKFCYNCIVQWTKVVSGKH 60
           MELQ  A +E++TS+S+SD T+PCPICLGPI Q SYLDKCFH FCYNCIVQWTKVVSGK 
Sbjct: 6   MELQSAASMEIKTSTSTSDYTDPCPICLGPINQSSYLDKCFHNFCYNCIVQWTKVVSGKR 65

Query: 61  SCTLSSIKCPLCKTESPSIIHGLDGHCFQRHYVNQDFQDSFILSKAQKYRLQCYYTEPGF 120
           SC LSSIKCPLCKTES SIIHGLDGH FQRHYVN DFQDSFILSKA KYRLQCYYTEPGF
Sbjct: 66  SCRLSSIKCPLCKTESSSIIHGLDGHHFQRHYVNPDFQDSFILSKAHKYRLQCYYTEPGF 125

Query: 121 LDDIFSVKKYWKLRKYLQANQWLEVWLKRELQALIQEEDVDIIMHHLLGSIHSFFSRNEP 180
           L+DIF V++YWKL+KYLQANQWLEVWLKRELQALIQEEDVDIIMHH +G I+SFF RNEP
Sbjct: 126 LNDIFDVQRYWKLQKYLQANQWLEVWLKRELQALIQEEDVDIIMHHFVGLINSFFRRNEP 185

Query: 181 RYQTETPQLKRERFNSMILDAAKPFLSERADRFVLELELFLASGLNIEAYDSVYLQRLGW 240
           +YQTETP+LKR+RF+  ILDAAKPFLS RADRF+LELELFLASGLNIEAYDSVYLQRLGW
Sbjct: 186 KYQTETPELKRKRFSQTILDAAKPFLSARADRFMLELELFLASGLNIEAYDSVYLQRLGW 245

Query: 241 NKPVGPSMA-VENLGHEPVTPYLFIFDYDPDD 272
           N+P+  S+A  E+LG + VTPYL+IFD DPDD
Sbjct: 246 NEPIVLSVANEEDLGLKSVTPYLYIFDNDPDD 277

[Close]

BLAST of Carg12894 vs. TAIR 10
Match: AT3G05250.1 (RING/U-box superfamily protein )

HSP 1 Score: 295.4 bits (755), Expect = 4.6e-80
Identity = 144/267 (53.93%), Postives = 189/267 (70.79%), Query Frame = 0


Query: 14  SSSSSDDTNPCPICLGPIIQPSYLDKCFHKFCYNCIVQWTKVVSGKHSCTLSSIKCPLCK 73
           S     D +PCPICLG  ++ SYLD CFHKFC+NCI QW KVVS K S   SS+ CPLCK
Sbjct: 12  SIDDGSDFDPCPICLGQFLRESYLDTCFHKFCFNCIKQWIKVVSSKASKQRSSVTCPLCK 71

Query: 74  TESPSIIHGLDGHCFQRHYVNQDFQDSFILSKAQKYRLQCYYTEPGFLDDIFSVKKYWKL 133
           TE+ SIIH  DG  F+RHY++ +  D F+L+K Q+YRLQCYYTE GFL D+F V ++WKL
Sbjct: 72  TENLSIIHNYDGCSFERHYIDPNIPDGFVLTKEQRYRLQCYYTESGFLADVFDVARFWKL 131

Query: 134 RKYLQANQWLEVWLKRELQALIQEEDVDIIMHHLLGSIHSFFSRNEPRYQTETPQLK--- 193
           +K+LQ N+ LE WL+RELQAL+QEEDVDI++HHL+G + SF  R + R + ET   +   
Sbjct: 132 QKFLQPNRCLEAWLRRELQALMQEEDVDIVLHHLVGVMESFCKRIKQRRKQETRSAETTN 191

Query: 194 RERFNSMILDAAKPFLSERADRFVLELELFLASGLNIEAYDSVYLQRLGWN--KPVGPSM 253
           +E+F +++ +AA+PF+  R DRFV ELELFLA+GLN+EAYD++Y Q L  N  + +G + 
Sbjct: 192 QEQFKAVVSEAARPFVMARTDRFVDELELFLAAGLNLEAYDAIYKQGLEGNNRREIGAAS 251

Query: 254 -----AVENLGHEPVTPYLFIFDYDPD 271
                  E+     VTPYLFIF+ D D
Sbjct: 252 EEREEVEEHNVRTRVTPYLFIFEEDSD 278

[Close]

BLAST of Carg12894 vs. TAIR 10
Match: AT2G39100.1 (RING/U-box superfamily protein )

HSP 1 Score: 48.9 bits (115), Expect = 7.5e-06
Identity = 29/91 (31.87%), Postives = 46/91 (50.55%), Query Frame = 0


Query: 143 LEVWLKRELQALIQEEDVDIIMHHLLGSIHSFFSRNEPRYQTETPQLKRERFNSMILDAA 202
           +E W++RELQA++ + D  +I+H           R   R   +T  L  +  +S+     
Sbjct: 204 IEPWIRRELQAVLGDPDPSVIVHFASALFIKRLERENNRQTGQTGMLVEDEVSSL----- 263

Query: 203 KPFLSERADRFVLELELFLASGLNIEAYDSV 234
           + FLS++ D F  EL  F  S L +E YD+V
Sbjct: 264 RKFLSDKVDIFWHELRCFAESILTMETYDAV 289

[Close]

BLAST of Carg12894 vs. TAIR 10
Match: AT4G10940.1 (RING/U-box protein )

HSP 1 Score: 43.9 bits (102), Expect = 2.4e-04
Identity = 21/67 (31.34%), Postives = 33/67 (49.25%), Query Frame = 0


Query: 9  LEMETSSSSSDDTNPCPICLGPIIQPSYLDKCFHKFCYNCIVQWTKVVSGKHSCTLSSIK 68
          +E+E +  +  +   C IC+  II    LD C H FC+ CI  W+ +++           
Sbjct: 16 VEVEHNGMTEIEGERCGICMDIIIDRGVLDCCQHWFCFECIDNWSTIMN----------L 72

Query: 69 CPLCKTE 76
          CPLC+ E
Sbjct: 76 CPLCQRE 72

The following BLAST results are available for this feature:

BLAST of Carg12894 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7030255.1	1.4e-160	100.00	E3 ubiquitin-protein ligase Topors [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022946760.1	1.6e-159	99.27	uncharacterized protein LOC111450733 [Cucurbita moschata]	[more]
XP_023545827.1	3.6e-159	98.90	uncharacterized protein LOC111805146 [Cucurbita pepo subsp. pepo]	[more]
XP_022999126.1	6.3e-156	97.44	uncharacterized protein LOC111493604 [Cucurbita maxima]	[more]
XP_038889020.1	3.1e-139	87.87	uncharacterized protein LOC120078783 isoform X1 [Benincasa hispida]	[more]

BLAST of Carg12894 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q80Z37	4.4e-11	30.97	E3 ubiquitin-protein ligase Topors OS=Mus musculus OX=10090 GN=Topors PE=1 SV=1	[more]
Q9NS56	2.2e-10	33.33	E3 ubiquitin-protein ligase Topors OS=Homo sapiens OX=9606 GN=TOPORS PE=1 SV=1	[more]
P29129	1.6e-05	39.34	E3 ubiquitin-protein ligase ICP0 OS=Suid herpesvirus 1 (strain Indiana-Funkhause...	[more]

BLAST of Carg12894 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G4Z2	7.8e-160	99.27	uncharacterized protein LOC111450733 OS=Cucurbita moschata OX=3662 GN=LOC1114507...	[more]
A0A6J1KC78	3.0e-156	97.44	uncharacterized protein LOC111493604 OS=Cucurbita maxima OX=3661 GN=LOC111493604...	[more]
A0A6J1DAB4	8.6e-135	84.31	uncharacterized protein LOC111018833 OS=Momordica charantia OX=3673 GN=LOC111018...	[more]
A0A0A0LLN5	2.4e-132	83.94	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G021620 P...	[more]
A0A5D3D454	3.0e-127	81.62	RING zinc finger protein-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]

BLAST of Carg12894 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G05250.1	4.6e-80	53.93	RING/U-box superfamily protein	[more]
AT2G39100.1	7.5e-06	31.87	RING/U-box superfamily protein	[more]
AT4G10940.1	2.4e-04	31.34	RING/U-box protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 24..72 e-value: 2.2E-4 score: 30.5
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 24..73 score: 11.95817
IPR018957	Zinc finger, C3HC4 RING-type	PFAM	PF00097	zf-C3HC4	coord: 24..72 e-value: 1.0E-8 score: 34.9
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 6..100 e-value: 3.1E-11 score: 44.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	PANTHER	PTHR47692	RING/U-BOX SUPERFAMILY PROTEIN	coord: 13..271
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 21..81
IPR017907	Zinc finger, RING-type, conserved site	PROSITE	PS00518	ZF_RING_1	coord: 40..49

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg12894-RA	Carg12894-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding