Carg12823 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg12823
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	protein translation factor SUI1 homolog
Location	Carg_Chr09: 5316227 .. 5317286 (-)
RNA-Seq Expression	Carg12823
Synteny	Carg12823

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCTCATTCCTCTCATCGTTCTTCCTTCCTTGTTCCTTTGATCTCTTTCGCGCGTTCTTGGTCTTTAGCTTTCTGGTGAGTTTCTGGTTCCTTCTGAATTCGTAGATTTTGTTCTTCCTTAGCCTGGATTTTCTTCTTTTTGTTTGTTTATGTCTGAGATTGATCGTGGTTAGGGTTTTGTTTATATCTCTTTGACTTTTGTGTTTTTTCTCGCAATTCCGAATTTGTTTGGTAAGATTCTGGTGTTGCTTCGTTTATGGAAGCCATGGATATTGCTTCGTTTGTATCCTGCTGGAATTTTGTCTTTCTTTCATGTTGTCAAGGGTTTTTTTATACGAGACGCATGTTTTGATCACTTAGGTCTCCAGTTAAGTCGTGGATGAATTGGATATTGCGAATTTTTGCTATATGTAAATTCTGGAGTTTTTGTTATGCCTTTCTCTCAATCCCGAATGTTTTCAGATCACCAGTTGTTCTGTTTGGTTTGAGCTTCATCCGAACTTGATTTTTGGCTATTTGTAAATTTCGGAGTTTTTGTTATGCCTTTCTCTGAATCCCGTCAGATTACCTGTTGTTCTGTTTGGTTTGAGCTTCATACTAACTTGATTTTCGGCTATATGTAAACTTTGAAGTTTTTGATATGCCTTCCTCTAAATCCCATATGCTTTCAGATTCGCAGTTGTTCAGTTTGGTTTAAAGCTTCATCCAAACAAAGTTCATGGTTGAATTAGACTTCCAGATCCCATCTGCTTTCGATCCATTCGCCGACGCCAAGGATTCTGATGCCCCCGGAACTAAAGCTTATGTTCATATCCGCGTTCAGCAGAGGAATGGCAAAAAGTGCTTGACTACAGTTCAGGGTCTGAAGAAAGAGTTCAGCTACGAGAAGATCCTTAAGGACGTGAAGAAGGAATTCTGCTGTAATGGTAACGTTGTTCAAGACAAAGAATTGGGGAAGATAATCCAACTTCAAGGCGATCAACGCAAAAACGTGTCTCAGTTCCTTGTCCAGGCTGGTCTCGTTAAGAAGGATCAGATCAAAATTCATGGGTTTTGA

mRNA sequence

ATGTTCTCATTCCTCTCATCGTTCTTCCTTCCTTGTTCCTTTGATCTCTTTCGCGCGTTCTTGGTCTTTAGCTTTCTGATCCCATCTGCTTTCGATCCATTCGCCGACGCCAAGGATTCTGATGCCCCCGGAACTAAAGCTTATGTTCATATCCGCGTTCAGCAGAGGAATGGCAAAAAGTGCTTGACTACAGTTCAGGGTCTGAAGAAAGAGTTCAGCTACGAGAAGATCCTTAAGGACGTGAAGAAGGAATTCTGCTGTAATGGTAACGTTGTTCAAGACAAAGAATTGGGGAAGATAATCCAACTTCAAGGCGATCAACGCAAAAACGTGTCTCAGTTCCTTGTCCAGGCTGGTCTCGTTAAGAAGGATCAGATCAAAATTCATGGGTTTTGA

Coding sequence (CDS)

ATGTTCTCATTCCTCTCATCGTTCTTCCTTCCTTGTTCCTTTGATCTCTTTCGCGCGTTCTTGGTCTTTAGCTTTCTGATCCCATCTGCTTTCGATCCATTCGCCGACGCCAAGGATTCTGATGCCCCCGGAACTAAAGCTTATGTTCATATCCGCGTTCAGCAGAGGAATGGCAAAAAGTGCTTGACTACAGTTCAGGGTCTGAAGAAAGAGTTCAGCTACGAGAAGATCCTTAAGGACGTGAAGAAGGAATTCTGCTGTAATGGTAACGTTGTTCAAGACAAAGAATTGGGGAAGATAATCCAACTTCAAGGCGATCAACGCAAAAACGTGTCTCAGTTCCTTGTCCAGGCTGGTCTCGTTAAGAAGGATCAGATCAAAATTCATGGGTTTTGA

Protein sequence

MFSFLSSFFLPCSFDLFRAFLVFSFLIPSAFDPFADAKDSDAPGTKAYVHIRVQQRNGKKCLTTVQGLKKEFSYEKILKDVKKEFCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF

Homology

[Close]

BLAST of Carg12823 vs. NCBI nr
Match: KAG7024922.1 (Protein translation factor SUI1-like 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 260.0 bits (663), Expect = 1.1e-65
Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 0


Query: 1   MFSFLSSFFLPCSFDLFRAFLVFSFLIPSAFDPFADAKDSDAPGTKAYVHIRVQQRNGKK 60
           MFSFLSSFFLPCSFDLFRAFLVFSFLIPSAFDPFADAKDSDAPGTKAYVHIRVQQRNGKK
Sbjct: 1   MFSFLSSFFLPCSFDLFRAFLVFSFLIPSAFDPFADAKDSDAPGTKAYVHIRVQQRNGKK 60

Query: 61  CLTTVQGLKKEFSYEKILKDVKKEFCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGL 120
           CLTTVQGLKKEFSYEKILKDVKKEFCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGL
Sbjct: 61  CLTTVQGLKKEFSYEKILKDVKKEFCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGL 120

Query: 121 VKKDQIKIHGF 132
           VKKDQIKIHGF
Sbjct: 121 VKKDQIKIHGF 131

[Close]

BLAST of Carg12823 vs. NCBI nr
Match: XP_022976609.1 (protein translation factor SUI1 homolog 1 [Cucurbita maxima] >XP_022976610.1 protein translation factor SUI1 homolog 1 [Cucurbita maxima] >KAG6592045.1 Protein translation factor SUI1-like 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 215.7 bits (548), Expect = 2.4e-52
Identity = 106/107 (99.07%), Postives = 106/107 (99.07%), Query Frame = 0


Query: 25  FLIPSAFDPFADAKDSDAPGTKAYVHIRVQQRNGKKCLTTVQGLKKEFSYEKILKDVKKE 84
           F IPSAFDPFADAKDSDAPGTKAYVHIRVQQRNGKKCLTTVQGLKKEFSYEKILKDVKKE
Sbjct: 6   FQIPSAFDPFADAKDSDAPGTKAYVHIRVQQRNGKKCLTTVQGLKKEFSYEKILKDVKKE 65

Query: 85  FCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF 132
           FCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF
Sbjct: 66  FCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF 112

[Close]

BLAST of Carg12823 vs. NCBI nr
Match: XP_023536045.1 (protein translation factor SUI1 homolog 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 214.5 bits (545), Expect = 5.3e-52
Identity = 105/107 (98.13%), Postives = 106/107 (99.07%), Query Frame = 0


Query: 25  FLIPSAFDPFADAKDSDAPGTKAYVHIRVQQRNGKKCLTTVQGLKKEFSYEKILKDVKKE 84
           F IPSAFDPFAD+KDSDAPGTKAYVHIRVQQRNGKKCLTTVQGLKKEFSYEKILKDVKKE
Sbjct: 6   FQIPSAFDPFADSKDSDAPGTKAYVHIRVQQRNGKKCLTTVQGLKKEFSYEKILKDVKKE 65

Query: 85  FCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF 132
           FCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF
Sbjct: 66  FCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF 112

[Close]

BLAST of Carg12823 vs. NCBI nr
Match: XP_022936190.1 (protein translation factor SUI1 homolog 1 [Cucurbita moschata])

HSP 1 Score: 214.5 bits (545), Expect = 5.3e-52
Identity = 105/107 (98.13%), Postives = 106/107 (99.07%), Query Frame = 0


Query: 25  FLIPSAFDPFADAKDSDAPGTKAYVHIRVQQRNGKKCLTTVQGLKKEFSYEKILKDVKKE 84
           F IPSAFDPFADAKDSDAPGTKAYVHIRVQQRNGKKCLTTVQGLKKEFSYEKILKDVKKE
Sbjct: 6   FQIPSAFDPFADAKDSDAPGTKAYVHIRVQQRNGKKCLTTVQGLKKEFSYEKILKDVKKE 65

Query: 85  FCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF 132
           FCCNGNVVQD+ELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF
Sbjct: 66  FCCNGNVVQDRELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF 112

[Close]

BLAST of Carg12823 vs. NCBI nr
Match: XP_004139787.1 (protein translation factor SUI1 homolog 1 [Cucumis sativus] >XP_008447738.1 PREDICTED: protein translation factor SUI1 homolog 1-like [Cucumis melo] >XP_038899382.1 protein translation factor SUI1 homolog 1-like [Benincasa hispida] >KGN44162.1 hypothetical protein Csa_015864 [Cucumis sativus])

HSP 1 Score: 213.8 bits (543), Expect = 9.1e-52
Identity = 105/107 (98.13%), Postives = 105/107 (98.13%), Query Frame = 0


Query: 25  FLIPSAFDPFADAKDSDAPGTKAYVHIRVQQRNGKKCLTTVQGLKKEFSYEKILKDVKKE 84
           F IPSAFDPFADAKDSDAPGTK YVHIRVQQRNGKKCLTTVQGLKKEFSYEKILKDVKKE
Sbjct: 6   FQIPSAFDPFADAKDSDAPGTKEYVHIRVQQRNGKKCLTTVQGLKKEFSYEKILKDVKKE 65

Query: 85  FCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF 132
           FCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF
Sbjct: 66  FCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF 112

[Close]

BLAST of Carg12823 vs. ExPASy Swiss-Prot
Match: Q94JV4 (Protein translation factor SUI1 homolog 2 OS=Arabidopsis thaliana OX=3702 GN=At1g54290 PE=3 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 2.7e-43
Identity = 86/106 (81.13%), Postives = 94/106 (88.68%), Query Frame = 0


Query: 27  IPSAFDPFADAKDSDA-PGTKAYVHIRVQQRNGKKCLTTVQGLKKEFSYEKILKDVKKEF 86
           +P+AFDPFADA   D+  GTK YVHIRVQQRNG+K LTTVQGLKKE+SY KILKD+KKEF
Sbjct: 8   VPTAFDPFADANAEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYSKILKDLKKEF 67

Query: 87  CCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF 132
           CCNG VVQD ELG++IQLQGDQRKNVS FLVQAGLVKKD IKIHGF
Sbjct: 68  CCNGTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDNIKIHGF 113

[Close]

BLAST of Carg12823 vs. ExPASy Swiss-Prot
Match: P41568 (Protein translation factor SUI1 homolog 1 OS=Arabidopsis thaliana OX=3702 GN=At4g27130 PE=1 SV=2)

HSP 1 Score: 175.6 bits (444), Expect = 3.6e-43
Identity = 86/106 (81.13%), Postives = 94/106 (88.68%), Query Frame = 0


Query: 27  IPSAFDPFADAKDSDA-PGTKAYVHIRVQQRNGKKCLTTVQGLKKEFSYEKILKDVKKEF 86
           +P+AFDPFADA   D+  GTK YVHIRVQQRNG+K LTTVQGLKKE+SY KILKD+KKEF
Sbjct: 8   VPTAFDPFADANAEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYTKILKDLKKEF 67

Query: 87  CCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF 132
           CCNG VVQD ELG++IQLQGDQRKNVS FLVQAGLVKKD IKIHGF
Sbjct: 68  CCNGTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDNIKIHGF 113

[Close]

BLAST of Carg12823 vs. ExPASy Swiss-Prot
Match: Q9SQF4 (Protein translation factor SUI1 homolog OS=Brassica oleracea OX=3712 PE=3 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 1.0e-42
Identity = 85/106 (80.19%), Postives = 94/106 (88.68%), Query Frame = 0


Query: 27  IPSAFDPFADAKDSDA-PGTKAYVHIRVQQRNGKKCLTTVQGLKKEFSYEKILKDVKKEF 86
           +P+AFDPFADA   D+  GTK YVHIRVQQRNG+K LTTVQGLKKE+SY KILKD+KKEF
Sbjct: 8   VPTAFDPFADANAEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYTKILKDLKKEF 67

Query: 87  CCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF 132
           CCNG VVQD ELG++IQLQGDQRKNVS FLVQAGLVKKD I+IHGF
Sbjct: 68  CCNGTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDDIQIHGF 113

[Close]

BLAST of Carg12823 vs. ExPASy Swiss-Prot
Match: P56330 (Protein translation factor SUI1 homolog OS=Zea mays OX=4577 GN=TIF PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 6.8e-42
Identity = 83/108 (76.85%), Postives = 94/108 (87.04%), Query Frame = 0


Query: 27  IPSAFDPFADAKDSD---APGTKAYVHIRVQQRNGKKCLTTVQGLKKEFSYEKILKDVKK 86
           IP+AFDPFA+A   D   A G+K YVH+R+QQRNG+K LTTVQGLKKEFSY KILKD+KK
Sbjct: 8   IPTAFDPFAEANAGDSGAAAGSKDYVHVRIQQRNGRKSLTTVQGLKKEFSYSKILKDLKK 67

Query: 87  EFCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF 132
           EFCCNG VVQD ELG++IQLQGDQRKNVS FLVQAG+VKK+ IKIHGF
Sbjct: 68  EFCCNGTVVQDPELGQVIQLQGDQRKNVSNFLVQAGIVKKEHIKIHGF 115

[Close]

BLAST of Carg12823 vs. ExPASy Swiss-Prot
Match: A6MZM2 (Protein translation factor SUI1 homolog OS=Oryza sativa subsp. indica OX=39946 GN=GOS2 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 6.8e-42
Identity = 83/108 (76.85%), Postives = 94/108 (87.04%), Query Frame = 0


Query: 27  IPSAFDPFADAKDSD---APGTKAYVHIRVQQRNGKKCLTTVQGLKKEFSYEKILKDVKK 86
           IP+AFDPFA+A   D   A G+K YVH+R+QQRNG+K LTTVQGLKKEFSY KILKD+KK
Sbjct: 8   IPTAFDPFAEANAGDSGAAAGSKDYVHVRIQQRNGRKSLTTVQGLKKEFSYNKILKDLKK 67

Query: 87  EFCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF 132
           EFCCNG VVQD ELG++IQLQGDQRKNVS FLVQAG+VKK+ IKIHGF
Sbjct: 68  EFCCNGTVVQDPELGQVIQLQGDQRKNVSNFLVQAGIVKKEHIKIHGF 115

[Close]

BLAST of Carg12823 vs. ExPASy TrEMBL
Match: A0A6J1IJY4 (protein translation factor SUI1 homolog 1 OS=Cucurbita maxima OX=3661 GN=LOC111476953 PE=3 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 1.2e-52
Identity = 106/107 (99.07%), Postives = 106/107 (99.07%), Query Frame = 0


Query: 25  FLIPSAFDPFADAKDSDAPGTKAYVHIRVQQRNGKKCLTTVQGLKKEFSYEKILKDVKKE 84
           F IPSAFDPFADAKDSDAPGTKAYVHIRVQQRNGKKCLTTVQGLKKEFSYEKILKDVKKE
Sbjct: 6   FQIPSAFDPFADAKDSDAPGTKAYVHIRVQQRNGKKCLTTVQGLKKEFSYEKILKDVKKE 65

Query: 85  FCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF 132
           FCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF
Sbjct: 66  FCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF 112

[Close]

BLAST of Carg12823 vs. ExPASy TrEMBL
Match: A0A6J1FCX8 (protein translation factor SUI1 homolog 1 OS=Cucurbita moschata OX=3662 GN=LOC111442862 PE=3 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 2.6e-52
Identity = 105/107 (98.13%), Postives = 106/107 (99.07%), Query Frame = 0


Query: 25  FLIPSAFDPFADAKDSDAPGTKAYVHIRVQQRNGKKCLTTVQGLKKEFSYEKILKDVKKE 84
           F IPSAFDPFADAKDSDAPGTKAYVHIRVQQRNGKKCLTTVQGLKKEFSYEKILKDVKKE
Sbjct: 6   FQIPSAFDPFADAKDSDAPGTKAYVHIRVQQRNGKKCLTTVQGLKKEFSYEKILKDVKKE 65

Query: 85  FCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF 132
           FCCNGNVVQD+ELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF
Sbjct: 66  FCCNGNVVQDRELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF 112

[Close]

BLAST of Carg12823 vs. ExPASy TrEMBL
Match: A0A5D3DHR8 (SUI1 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G001030 PE=3 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 4.4e-52
Identity = 106/114 (92.98%), Postives = 107/114 (93.86%), Query Frame = 0


Query: 18  RAFLVFSFLIPSAFDPFADAKDSDAPGTKAYVHIRVQQRNGKKCLTTVQGLKKEFSYEKI 77
           R  +   F IPSAFDPFADAKDSDAPGTK YVHIRVQQRNGKKCLTTVQGLKKEFSYEKI
Sbjct: 37  RFMVELDFQIPSAFDPFADAKDSDAPGTKEYVHIRVQQRNGKKCLTTVQGLKKEFSYEKI 96

Query: 78  LKDVKKEFCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF 132
           LKDVKKEFCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF
Sbjct: 97  LKDVKKEFCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF 150

[Close]

BLAST of Carg12823 vs. ExPASy TrEMBL
Match: A0A0A0K771 (SUI1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G209580 PE=3 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 4.4e-52
Identity = 105/107 (98.13%), Postives = 105/107 (98.13%), Query Frame = 0


Query: 25  FLIPSAFDPFADAKDSDAPGTKAYVHIRVQQRNGKKCLTTVQGLKKEFSYEKILKDVKKE 84
           F IPSAFDPFADAKDSDAPGTK YVHIRVQQRNGKKCLTTVQGLKKEFSYEKILKDVKKE
Sbjct: 6   FQIPSAFDPFADAKDSDAPGTKEYVHIRVQQRNGKKCLTTVQGLKKEFSYEKILKDVKKE 65

Query: 85  FCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF 132
           FCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF
Sbjct: 66  FCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF 112

[Close]

BLAST of Carg12823 vs. ExPASy TrEMBL
Match: A0A1S3BI45 (protein translation factor SUI1 homolog 1-like OS=Cucumis melo OX=3656 GN=LOC103490142 PE=3 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 4.4e-52
Identity = 105/107 (98.13%), Postives = 105/107 (98.13%), Query Frame = 0


Query: 25  FLIPSAFDPFADAKDSDAPGTKAYVHIRVQQRNGKKCLTTVQGLKKEFSYEKILKDVKKE 84
           F IPSAFDPFADAKDSDAPGTK YVHIRVQQRNGKKCLTTVQGLKKEFSYEKILKDVKKE
Sbjct: 6   FQIPSAFDPFADAKDSDAPGTKEYVHIRVQQRNGKKCLTTVQGLKKEFSYEKILKDVKKE 65

Query: 85  FCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF 132
           FCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF
Sbjct: 66  FCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF 112

[Close]

BLAST of Carg12823 vs. TAIR 10
Match: AT5G54940.1 (Translation initiation factor SUI1 family protein )

HSP 1 Score: 189.1 bits (479), Expect = 2.2e-48
Identity = 89/105 (84.76%), Postives = 98/105 (93.33%), Query Frame = 0


Query: 27  IPSAFDPFADAKDSDAPGTKAYVHIRVQQRNGKKCLTTVQGLKKEFSYEKILKDVKKEFC 86
           IPSA+DPFA+AKDSDAPG K  +HIR+QQRNGKK LTTVQGLKKE+SYE+ILKD+KK+FC
Sbjct: 8   IPSAYDPFAEAKDSDAPGAKENIHIRIQQRNGKKSLTTVQGLKKEYSYERILKDLKKDFC 67

Query: 87  CNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF 132
           CNGNVVQDKELGKIIQLQGDQRK VSQFLVQ G+ KKDQIKIHGF
Sbjct: 68  CNGNVVQDKELGKIIQLQGDQRKKVSQFLVQTGIAKKDQIKIHGF 112

[Close]

BLAST of Carg12823 vs. TAIR 10
Match: AT5G54940.2 (Translation initiation factor SUI1 family protein )

HSP 1 Score: 189.1 bits (479), Expect = 2.2e-48
Identity = 89/105 (84.76%), Postives = 98/105 (93.33%), Query Frame = 0


Query: 27  IPSAFDPFADAKDSDAPGTKAYVHIRVQQRNGKKCLTTVQGLKKEFSYEKILKDVKKEFC 86
           IPSA+DPFA+AKDSDAPG K  +HIR+QQRNGKK LTTVQGLKKE+SYE+ILKD+KK+FC
Sbjct: 8   IPSAYDPFAEAKDSDAPGAKENIHIRIQQRNGKKSLTTVQGLKKEYSYERILKDLKKDFC 67

Query: 87  CNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF 132
           CNGNVVQDKELGKIIQLQGDQRK VSQFLVQ G+ KKDQIKIHGF
Sbjct: 68  CNGNVVQDKELGKIIQLQGDQRKKVSQFLVQTGIAKKDQIKIHGF 112

[Close]

BLAST of Carg12823 vs. TAIR 10
Match: AT1G54290.1 (Translation initiation factor SUI1 family protein )

HSP 1 Score: 176.0 bits (445), Expect = 2.0e-44
Identity = 86/106 (81.13%), Postives = 94/106 (88.68%), Query Frame = 0


Query: 27  IPSAFDPFADAKDSDA-PGTKAYVHIRVQQRNGKKCLTTVQGLKKEFSYEKILKDVKKEF 86
           +P+AFDPFADA   D+  GTK YVHIRVQQRNG+K LTTVQGLKKE+SY KILKD+KKEF
Sbjct: 8   VPTAFDPFADANAEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYSKILKDLKKEF 67

Query: 87  CCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF 132
           CCNG VVQD ELG++IQLQGDQRKNVS FLVQAGLVKKD IKIHGF
Sbjct: 68  CCNGTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDNIKIHGF 113

[Close]

BLAST of Carg12823 vs. TAIR 10
Match: AT4G27130.1 (Translation initiation factor SUI1 family protein )

HSP 1 Score: 175.6 bits (444), Expect = 2.5e-44
Identity = 86/106 (81.13%), Postives = 94/106 (88.68%), Query Frame = 0


Query: 27  IPSAFDPFADAKDSDA-PGTKAYVHIRVQQRNGKKCLTTVQGLKKEFSYEKILKDVKKEF 86
           +P+AFDPFADA   D+  GTK YVHIRVQQRNG+K LTTVQGLKKE+SY KILKD+KKEF
Sbjct: 8   VPTAFDPFADANAEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYTKILKDLKKEF 67

Query: 87  CCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF 132
           CCNG VVQD ELG++IQLQGDQRKNVS FLVQAGLVKKD IKIHGF
Sbjct: 68  CCNGTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDNIKIHGF 113

[Close]

BLAST of Carg12823 vs. TAIR 10
Match: AT5G54760.1 (Translation initiation factor SUI1 family protein )

HSP 1 Score: 175.3 bits (443), Expect = 3.3e-44
Identity = 86/106 (81.13%), Postives = 94/106 (88.68%), Query Frame = 0


Query: 27  IPSAFDPFADAKDSDA-PGTKAYVHIRVQQRNGKKCLTTVQGLKKEFSYEKILKDVKKEF 86
           +P+AFDPFADA   D+  GTK YVHIRVQQRNG+K LTTVQGLKKE+SY KILKD+KKEF
Sbjct: 8   VPTAFDPFADANVEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYTKILKDLKKEF 67

Query: 87  CCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF 132
           CCNG VVQD ELG++IQLQGDQRKNVS FLVQAGLVKKD IKIHGF
Sbjct: 68  CCNGTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDNIKIHGF 113

The following BLAST results are available for this feature:

BLAST of Carg12823 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7024922.1	1.1e-65	100.00	Protein translation factor SUI1-like 1, partial [Cucurbita argyrosperma subsp. a...	[more]
XP_022976609.1	2.4e-52	99.07	protein translation factor SUI1 homolog 1 [Cucurbita maxima] >XP_022976610.1 pro...	[more]
XP_023536045.1	5.3e-52	98.13	protein translation factor SUI1 homolog 1 [Cucurbita pepo subsp. pepo]	[more]
XP_022936190.1	5.3e-52	98.13	protein translation factor SUI1 homolog 1 [Cucurbita moschata]	[more]
XP_004139787.1	9.1e-52	98.13	protein translation factor SUI1 homolog 1 [Cucumis sativus] >XP_008447738.1 PRED...	[more]

BLAST of Carg12823 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94JV4	2.7e-43	81.13	Protein translation factor SUI1 homolog 2 OS=Arabidopsis thaliana OX=3702 GN=At1...	[more]
P41568	3.6e-43	81.13	Protein translation factor SUI1 homolog 1 OS=Arabidopsis thaliana OX=3702 GN=At4...	[more]
Q9SQF4	1.0e-42	80.19	Protein translation factor SUI1 homolog OS=Brassica oleracea OX=3712 PE=3 SV=1	[more]
P56330	6.8e-42	76.85	Protein translation factor SUI1 homolog OS=Zea mays OX=4577 GN=TIF PE=3 SV=1	[more]
A6MZM2	6.8e-42	76.85	Protein translation factor SUI1 homolog OS=Oryza sativa subsp. indica OX=39946 G...	[more]

BLAST of Carg12823 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IJY4	1.2e-52	99.07	protein translation factor SUI1 homolog 1 OS=Cucurbita maxima OX=3661 GN=LOC1114...	[more]
A0A6J1FCX8	2.6e-52	98.13	protein translation factor SUI1 homolog 1 OS=Cucurbita moschata OX=3662 GN=LOC11...	[more]
A0A5D3DHR8	4.4e-52	92.98	SUI1 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A0A0K771	4.4e-52	98.13	SUI1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G209580 PE=3 S...	[more]
A0A1S3BI45	4.4e-52	98.13	protein translation factor SUI1 homolog 1-like OS=Cucumis melo OX=3656 GN=LOC103...	[more]

BLAST of Carg12823 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G54940.1	2.2e-48	84.76	Translation initiation factor SUI1 family protein	[more]
AT5G54940.2	2.2e-48	84.76	Translation initiation factor SUI1 family protein	[more]
AT1G54290.1	2.0e-44	81.13	Translation initiation factor SUI1 family protein	[more]
AT4G27130.1	2.5e-44	81.13	Translation initiation factor SUI1 family protein	[more]
AT5G54760.1	3.3e-44	81.13	Translation initiation factor SUI1 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.780.10		coord: 22..131 e-value: 3.8E-45 score: 155.2
None	No IPR available	PANTHER	PTHR10388	EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1	coord: 25..131
None	No IPR available	PANTHER	PTHR10388:SF56	BNAA10G09260D PROTEIN	coord: 25..131
IPR001950	SUI1 domain	PFAM	PF01253	SUI1	coord: 46..120 e-value: 7.1E-24 score: 84.1
IPR001950	SUI1 domain	PROSITE	PS50296	SUI1	coord: 49..119 score: 22.770058
IPR005874	Eukaryotic translation initiation factor SUI1	TIGRFAM	TIGR01160	TIGR01160	coord: 29..131 e-value: 1.0E-51 score: 172.1
IPR005874	Eukaryotic translation initiation factor SUI1	CDD	cd11566	eIF1_SUI1	coord: 48..130 e-value: 1.09638E-50 score: 153.845
IPR036877	SUI1 domain superfamily	SUPERFAMILY	55159	eIF1-like	coord: 23..131

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg12823-RA	Carg12823-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006413	translational initiation
molecular_function	GO:0003743	translation initiation factor activity