Carg12798 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg12798
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	protein NDR1-like
Location	Carg_Chr09: 5154415 .. 5155035 (-)
RNA-Seq Expression	Carg12798
Synteny	Carg12798

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGGAACCCGGCGGCTGCTGCCGGTGTTGTTTCAGCTTCATCTTAACTTCCGGCTTCGCTGCTCTGTTCTTATGGCTCAGCCTTCGAACCCGCAAACCCAAATGCTCCATCGAACATTTTTACATTCCAGCCTTAAATCAATCCCTAAATTCGCCTTTAAATTCCACCGTCTCCTTCGATCTGCGCCTCAAAAACCAGAACAAAGACAAATCAGTCTTCTACGACTCTCTCAATCTCAACCTCACACTCGTCGGAGCGGCCGCCGGCGGCAGCCGGCGGCCGCTGGGCAACGTGACAGTGCCCGGATTCCACCAAGGCCGCGGCAAGAAGGCGTTCAGAAACGAGACCATCGAGACCCGTGGAGTGGATTGGAAGGCGGTTTCCCGGAATGGGGCGGCGGTTTTCCGGCTGGATTTGGCGACGGCGGTCCGGTTCAAGATCTTGTTCTGGAATACCAAGAGGGAGAATTTGAGAGTCGGAGCGGAGTTCAAAGTCAACGAGCAGGGAGCGACGGAATACCCAGGGATTACTCTTAGCTCCGGCGCCGCCGTGCCCGACGGCTCGCCGGTGAGGGTTATTTGGAGTTTTTGGGTGTTTGTCTTGTGGAAACTTTTCTGA

mRNA sequence

ATGACGGAACCCGGCGGCTGCTGCCGGTGTTGTTTCAGCTTCATCTTAACTTCCGGCTTCGCTGCTCTGTTCTTATGGCTCAGCCTTCGAACCCGCAAACCCAAATGCTCCATCGAACATTTTTACATTCCAGCCTTAAATCAATCCCTAAATTCGCCTTTAAATTCCACCGTCTCCTTCGATCTGCGCCTCAAAAACCAGAACAAAGACAAATCAGTCTTCTACGACTCTCTCAATCTCAACCTCACACTCGTCGGAGCGGCCGCCGGCGGCAGCCGGCGGCCGCTGGGCAACGTGACAGTGCCCGGATTCCACCAAGGCCGCGGCAAGAAGGCGTTCAGAAACGAGACCATCGAGACCCGTGGAGTGGATTGGAAGGCGGTTTCCCGGAATGGGGCGGCGGTTTTCCGGCTGGATTTGGCGACGGCGGTCCGGTTCAAGATCTTGTTCTGGAATACCAAGAGGGAGAATTTGAGAGTCGGAGCGGAGTTCAAAGTCAACGAGCAGGGAGCGACGGAATACCCAGGGATTACTCTTAGCTCCGGCGCCGCCGTGCCCGACGGCTCGCCGGTGAGGGTTATTTGGAGTTTTTGGGTGTTTGTCTTGTGGAAACTTTTCTGA

Coding sequence (CDS)

ATGACGGAACCCGGCGGCTGCTGCCGGTGTTGTTTCAGCTTCATCTTAACTTCCGGCTTCGCTGCTCTGTTCTTATGGCTCAGCCTTCGAACCCGCAAACCCAAATGCTCCATCGAACATTTTTACATTCCAGCCTTAAATCAATCCCTAAATTCGCCTTTAAATTCCACCGTCTCCTTCGATCTGCGCCTCAAAAACCAGAACAAAGACAAATCAGTCTTCTACGACTCTCTCAATCTCAACCTCACACTCGTCGGAGCGGCCGCCGGCGGCAGCCGGCGGCCGCTGGGCAACGTGACAGTGCCCGGATTCCACCAAGGCCGCGGCAAGAAGGCGTTCAGAAACGAGACCATCGAGACCCGTGGAGTGGATTGGAAGGCGGTTTCCCGGAATGGGGCGGCGGTTTTCCGGCTGGATTTGGCGACGGCGGTCCGGTTCAAGATCTTGTTCTGGAATACCAAGAGGGAGAATTTGAGAGTCGGAGCGGAGTTCAAAGTCAACGAGCAGGGAGCGACGGAATACCCAGGGATTACTCTTAGCTCCGGCGCCGCCGTGCCCGACGGCTCGCCGGTGAGGGTTATTTGGAGTTTTTGGGTGTTTGTCTTGTGGAAACTTTTCTGA

Protein sequence

MTEPGGCCRCCFSFILTSGFAALFLWLSLRTRKPKCSIEHFYIPALNQSLNSPLNSTVSFDLRLKNQNKDKSVFYDSLNLNLTLVGAAAGGSRRPLGNVTVPGFHQGRGKKAFRNETIETRGVDWKAVSRNGAAVFRLDLATAVRFKILFWNTKRENLRVGAEFKVNEQGATEYPGITLSSGAAVPDGSPVRVIWSFWVFVLWKLF

Homology

[Close]

BLAST of Carg12798 vs. NCBI nr
Match: KAG7024897.1 (Protein NDR1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 423.7 bits (1088), Expect = 9.1e-115
Identity = 206/206 (100.00%), Postives = 206/206 (100.00%), Query Frame = 0


Query: 1   MTEPGGCCRCCFSFILTSGFAALFLWLSLRTRKPKCSIEHFYIPALNQSLNSPLNSTVSF 60
           MTEPGGCCRCCFSFILTSGFAALFLWLSLRTRKPKCSIEHFYIPALNQSLNSPLNSTVSF
Sbjct: 1   MTEPGGCCRCCFSFILTSGFAALFLWLSLRTRKPKCSIEHFYIPALNQSLNSPLNSTVSF 60

Query: 61  DLRLKNQNKDKSVFYDSLNLNLTLVGAAAGGSRRPLGNVTVPGFHQGRGKKAFRNETIET 120
           DLRLKNQNKDKSVFYDSLNLNLTLVGAAAGGSRRPLGNVTVPGFHQGRGKKAFRNETIET
Sbjct: 61  DLRLKNQNKDKSVFYDSLNLNLTLVGAAAGGSRRPLGNVTVPGFHQGRGKKAFRNETIET 120

Query: 121 RGVDWKAVSRNGAAVFRLDLATAVRFKILFWNTKRENLRVGAEFKVNEQGATEYPGITLS 180
           RGVDWKAVSRNGAAVFRLDLATAVRFKILFWNTKRENLRVGAEFKVNEQGATEYPGITLS
Sbjct: 121 RGVDWKAVSRNGAAVFRLDLATAVRFKILFWNTKRENLRVGAEFKVNEQGATEYPGITLS 180

Query: 181 SGAAVPDGSPVRVIWSFWVFVLWKLF 207
           SGAAVPDGSPVRVIWSFWVFVLWKLF
Sbjct: 181 SGAAVPDGSPVRVIWSFWVFVLWKLF 206

[Close]

BLAST of Carg12798 vs. NCBI nr
Match: XP_022935836.1 (protein NDR1-like [Cucurbita moschata])

HSP 1 Score: 422.2 bits (1084), Expect = 2.6e-114
Identity = 205/206 (99.51%), Postives = 205/206 (99.51%), Query Frame = 0


Query: 1   MTEPGGCCRCCFSFILTSGFAALFLWLSLRTRKPKCSIEHFYIPALNQSLNSPLNSTVSF 60
           MTEPGGCCRCCFSFILTSGFAALFLWLSLRTRKPKCSIEHFYIPALNQSLNSPLNSTVSF
Sbjct: 1   MTEPGGCCRCCFSFILTSGFAALFLWLSLRTRKPKCSIEHFYIPALNQSLNSPLNSTVSF 60

Query: 61  DLRLKNQNKDKSVFYDSLNLNLTLVGAAAGGSRRPLGNVTVPGFHQGRGKKAFRNETIET 120
           DLRLKNQNKDKSVFYDSLNLNLTLVGAAAGGSRRPLGNVTVPGFHQGRGKKAFRNETIET
Sbjct: 61  DLRLKNQNKDKSVFYDSLNLNLTLVGAAAGGSRRPLGNVTVPGFHQGRGKKAFRNETIET 120

Query: 121 RGVDWKAVSRNGAAVFRLDLATAVRFKILFWNTKRENLRVGAEFKVNEQGATEYPGITLS 180
           RGVDWKAVSRNGAAVFRLDLATAVRFKILFWNTKRENLRVGAEFKVNEQGATEYPGITLS
Sbjct: 121 RGVDWKAVSRNGAAVFRLDLATAVRFKILFWNTKRENLRVGAEFKVNEQGATEYPGITLS 180

Query: 181 SGAAVPDGSPVRVIWSFWVFVLWKLF 207
           SG AVPDGSPVRVIWSFWVFVLWKLF
Sbjct: 181 SGVAVPDGSPVRVIWSFWVFVLWKLF 206

[Close]

BLAST of Carg12798 vs. NCBI nr
Match: KAG6592022.1 (Protein NDR1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 421.4 bits (1082), Expect = 4.5e-114
Identity = 205/206 (99.51%), Postives = 205/206 (99.51%), Query Frame = 0


Query: 1   MTEPGGCCRCCFSFILTSGFAALFLWLSLRTRKPKCSIEHFYIPALNQSLNSPLNSTVSF 60
           MTEPGGCCRCCFSFILTSGFAALFLWLSLRTRKPKCSIEHFYIPALNQSLNSPLNSTVSF
Sbjct: 1   MTEPGGCCRCCFSFILTSGFAALFLWLSLRTRKPKCSIEHFYIPALNQSLNSPLNSTVSF 60

Query: 61  DLRLKNQNKDKSVFYDSLNLNLTLVGAAAGGSRRPLGNVTVPGFHQGRGKKAFRNETIET 120
           DLRLKNQNKDKSVFYDSLNLNLTLVGAAAGGSRRPLGNVTVPGFHQGRGKKAFRNE IET
Sbjct: 61  DLRLKNQNKDKSVFYDSLNLNLTLVGAAAGGSRRPLGNVTVPGFHQGRGKKAFRNEIIET 120

Query: 121 RGVDWKAVSRNGAAVFRLDLATAVRFKILFWNTKRENLRVGAEFKVNEQGATEYPGITLS 180
           RGVDWKAVSRNGAAVFRLDLATAVRFKILFWNTKRENLRVGAEFKVNEQGATEYPGITLS
Sbjct: 121 RGVDWKAVSRNGAAVFRLDLATAVRFKILFWNTKRENLRVGAEFKVNEQGATEYPGITLS 180

Query: 181 SGAAVPDGSPVRVIWSFWVFVLWKLF 207
           SGAAVPDGSPVRVIWSFWVFVLWKLF
Sbjct: 181 SGAAVPDGSPVRVIWSFWVFVLWKLF 206

[Close]

BLAST of Carg12798 vs. NCBI nr
Match: XP_023535135.1 (protein NDR1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 395.6 bits (1015), Expect = 2.6e-106
Identity = 195/206 (94.66%), Postives = 197/206 (95.63%), Query Frame = 0


Query: 1   MTEPGGCCRCCFSFILTSGFAALFLWLSLRTRKPKCSIEHFYIPALNQSLNSPLNSTVSF 60
           MTE GGCCRCCFSFILTSGFAALFLWLSLRTRKPKCSIEHFYIPALNQSLNSPLNSTVSF
Sbjct: 1   MTESGGCCRCCFSFILTSGFAALFLWLSLRTRKPKCSIEHFYIPALNQSLNSPLNSTVSF 60

Query: 61  DLRLKNQNKDKSVFYDSLNLNLTLVGAAAGGSRRPLGNVTVPGFHQGRGKKAFRNETIET 120
           DLRLKNQNKDKSVFYDSLNLNLTLVG      RRPLGNVTVPGFHQGRGKKAFRNETIET
Sbjct: 61  DLRLKNQNKDKSVFYDSLNLNLTLVG------RRPLGNVTVPGFHQGRGKKAFRNETIET 120

Query: 121 RGVDWKAVSRNGAAVFRLDLATAVRFKILFWNTKRENLRVGAEFKVNEQGATEYPGITLS 180
           RGVDWKAVSRNG+A+FRLDLATAVRFKILFWNTKRENLRVGAEFKVN QGATEYPGITLS
Sbjct: 121 RGVDWKAVSRNGSAIFRLDLATAVRFKILFWNTKRENLRVGAEFKVNGQGATEYPGITLS 180

Query: 181 SGAAVPDGSPVRVIWSFWVFVLWKLF 207
           SGAAV DGSPVRVIWSFWVFVLWKLF
Sbjct: 181 SGAAVLDGSPVRVIWSFWVFVLWKLF 200

[Close]

BLAST of Carg12798 vs. NCBI nr
Match: XP_022976581.1 (protein NDR1-like [Cucurbita maxima])

HSP 1 Score: 387.9 bits (995), Expect = 5.5e-104
Identity = 191/206 (92.72%), Postives = 194/206 (94.17%), Query Frame = 0


Query: 1   MTEPGGCCRCCFSFILTSGFAALFLWLSLRTRKPKCSIEHFYIPALNQSLNSPLNSTVSF 60
           MTE GGCCRCCFSFILTSGFAALFLWLSLRTRKPKCSIE FYIPALNQSLNSPLNSTVSF
Sbjct: 1   MTESGGCCRCCFSFILTSGFAALFLWLSLRTRKPKCSIESFYIPALNQSLNSPLNSTVSF 60

Query: 61  DLRLKNQNKDKSVFYDSLNLNLTLVGAAAGGSRRPLGNVTVPGFHQGRGKKAFRNETIET 120
           DLRLKNQNKDKSVFYDSLNLNLTLVG       RPLGNVTVPGFHQGRGKKAFRNETIE 
Sbjct: 61  DLRLKNQNKDKSVFYDSLNLNLTLVGG------RPLGNVTVPGFHQGRGKKAFRNETIEA 120

Query: 121 RGVDWKAVSRNGAAVFRLDLATAVRFKILFWNTKRENLRVGAEFKVNEQGATEYPGITLS 180
           RGVDWKAVSRNG+A+FRLDLATAVRFKILFWNTKRENLRVGAEFKVN+QGATEYPGITLS
Sbjct: 121 RGVDWKAVSRNGSAIFRLDLATAVRFKILFWNTKRENLRVGAEFKVNKQGATEYPGITLS 180

Query: 181 SGAAVPDGSPVRVIWSFWVFVLWKLF 207
           SGAAVPDGSPV VIWS WVFVLWKLF
Sbjct: 181 SGAAVPDGSPVTVIWSSWVFVLWKLF 200

[Close]

BLAST of Carg12798 vs. ExPASy Swiss-Prot
Match: O48915 (Protein NDR1 OS=Arabidopsis thaliana OX=3702 GN=NDR1 PE=1 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 2.2e-39
Identity = 95/214 (44.39%), Postives = 127/214 (59.35%), Query Frame = 0


Query: 2   TEPG-GCCRCCFSFILTSGFAALFLWLSLRTRKPKCSIEHFYIPALNQSLNSPLNSTVSF 61
           TE G  CC CC SFI T+G  +LFLWLSLR  KPKCSI++F+IPAL +  NS  N+T++F
Sbjct: 8   TEGGRNCCTCCLSFIFTAGLTSLFLWLSLRADKPKCSIQNFFIPALGKDPNSRDNTTLNF 67

Query: 62  DLRLKNQNKDKSVFYDSLNLNLTLVGAAAGGSRR--PLGNVTVPGFHQGRGKKA------ 121
            +R  N NKDK ++YD ++LN + +      S     +GN TVP F+QG  KKA      
Sbjct: 68  MVRCDNPNKDKGIYYDDVHLNFSTINTTKINSSALVLVGNYTVPKFYQGHKKKAKKWGQV 127

Query: 122 --FRNETIETRGVDWKAVSRNGAAVFRLDLATAVRFKILFWNTKRENLRVGAEFKVNEQG 181
               N+T+       +AV  NG+AVFRLDL T VRFKI+FW TKR  + VGA+ +VN  G
Sbjct: 128 KPLNNQTV------LRAVLPNGSAVFRLDLKTQVRFKIVFWKTKRYGVEVGADVEVNGDG 187

Query: 182 A-TEYPGITL---SSGAAVPDGSPVRVIWSFWVF 201
              +  GI +    S   +    P+ V+ +  VF
Sbjct: 188 VKAQKKGIKMKKSDSSFPLRSSFPISVLMNLLVF 215

[Close]

BLAST of Carg12798 vs. ExPASy TrEMBL
Match: A0A6J1F5U5 (protein NDR1-like OS=Cucurbita moschata OX=3662 GN=LOC111442624 PE=4 SV=1)

HSP 1 Score: 422.2 bits (1084), Expect = 1.3e-114
Identity = 205/206 (99.51%), Postives = 205/206 (99.51%), Query Frame = 0


Query: 1   MTEPGGCCRCCFSFILTSGFAALFLWLSLRTRKPKCSIEHFYIPALNQSLNSPLNSTVSF 60
           MTEPGGCCRCCFSFILTSGFAALFLWLSLRTRKPKCSIEHFYIPALNQSLNSPLNSTVSF
Sbjct: 1   MTEPGGCCRCCFSFILTSGFAALFLWLSLRTRKPKCSIEHFYIPALNQSLNSPLNSTVSF 60

Query: 61  DLRLKNQNKDKSVFYDSLNLNLTLVGAAAGGSRRPLGNVTVPGFHQGRGKKAFRNETIET 120
           DLRLKNQNKDKSVFYDSLNLNLTLVGAAAGGSRRPLGNVTVPGFHQGRGKKAFRNETIET
Sbjct: 61  DLRLKNQNKDKSVFYDSLNLNLTLVGAAAGGSRRPLGNVTVPGFHQGRGKKAFRNETIET 120

Query: 121 RGVDWKAVSRNGAAVFRLDLATAVRFKILFWNTKRENLRVGAEFKVNEQGATEYPGITLS 180
           RGVDWKAVSRNGAAVFRLDLATAVRFKILFWNTKRENLRVGAEFKVNEQGATEYPGITLS
Sbjct: 121 RGVDWKAVSRNGAAVFRLDLATAVRFKILFWNTKRENLRVGAEFKVNEQGATEYPGITLS 180

Query: 181 SGAAVPDGSPVRVIWSFWVFVLWKLF 207
           SG AVPDGSPVRVIWSFWVFVLWKLF
Sbjct: 181 SGVAVPDGSPVRVIWSFWVFVLWKLF 206

[Close]

BLAST of Carg12798 vs. ExPASy TrEMBL
Match: A0A6J1IH99 (protein NDR1-like OS=Cucurbita maxima OX=3661 GN=LOC111476935 PE=4 SV=1)

HSP 1 Score: 387.9 bits (995), Expect = 2.7e-104
Identity = 191/206 (92.72%), Postives = 194/206 (94.17%), Query Frame = 0


Query: 1   MTEPGGCCRCCFSFILTSGFAALFLWLSLRTRKPKCSIEHFYIPALNQSLNSPLNSTVSF 60
           MTE GGCCRCCFSFILTSGFAALFLWLSLRTRKPKCSIE FYIPALNQSLNSPLNSTVSF
Sbjct: 1   MTESGGCCRCCFSFILTSGFAALFLWLSLRTRKPKCSIESFYIPALNQSLNSPLNSTVSF 60

Query: 61  DLRLKNQNKDKSVFYDSLNLNLTLVGAAAGGSRRPLGNVTVPGFHQGRGKKAFRNETIET 120
           DLRLKNQNKDKSVFYDSLNLNLTLVG       RPLGNVTVPGFHQGRGKKAFRNETIE 
Sbjct: 61  DLRLKNQNKDKSVFYDSLNLNLTLVGG------RPLGNVTVPGFHQGRGKKAFRNETIEA 120

Query: 121 RGVDWKAVSRNGAAVFRLDLATAVRFKILFWNTKRENLRVGAEFKVNEQGATEYPGITLS 180
           RGVDWKAVSRNG+A+FRLDLATAVRFKILFWNTKRENLRVGAEFKVN+QGATEYPGITLS
Sbjct: 121 RGVDWKAVSRNGSAIFRLDLATAVRFKILFWNTKRENLRVGAEFKVNKQGATEYPGITLS 180

Query: 181 SGAAVPDGSPVRVIWSFWVFVLWKLF 207
           SGAAVPDGSPV VIWS WVFVLWKLF
Sbjct: 181 SGAAVPDGSPVTVIWSSWVFVLWKLF 200

[Close]

BLAST of Carg12798 vs. ExPASy TrEMBL
Match: A0A6J1CEH8 (protein NDR1-like OS=Momordica charantia OX=3673 GN=LOC111010486 PE=4 SV=1)

HSP 1 Score: 312.4 bits (799), Expect = 1.4e-81
Identity = 158/207 (76.33%), Postives = 170/207 (82.13%), Query Frame = 0


Query: 1   MTEPGGCCRCCFSFILTSGFAALFLWLSLRTRKPKCSIEHFYIPALNQSLNSPLNSTVSF 60
           MTE GGC RCCFSFILTSGF ALFLWLSLRT KPKCSIE FYIPALNQSLNS  +STV F
Sbjct: 1   MTEAGGCGRCCFSFILTSGFTALFLWLSLRTHKPKCSIESFYIPALNQSLNSSSDSTVFF 60

Query: 61  DLRLKNQNKDKSVFYDSLNLNLTLVGAAAGGSRRPLGNVTVPGFHQGRGKKAFRNETIET 120
           DLRLKNQNKDKSVFYD++NLNLTLV     G RRP+GN+TV GFHQGR KKAFR   +E 
Sbjct: 61  DLRLKNQNKDKSVFYDAINLNLTLV----DGGRRPVGNLTVAGFHQGRDKKAFRKGQVEA 120

Query: 121 RGVDWKAVSRNGAAVFRLDLATAVRFKILFWNTKRENLRVGAEFKVNEQGATEYP-GITL 180
           RGVDWKAV RNG+AVFRLDLATAVR+KILFW TKR+NLRVGAE KVN QGA EYP GITL
Sbjct: 121 RGVDWKAVRRNGSAVFRLDLATAVRYKILFWKTKRDNLRVGAEVKVNAQGAKEYPHGITL 180

Query: 181 SSGAAVPDGSPVRVIWSFWVFVLWKLF 207
           SSGAAV   SP   +WS    +LWK +
Sbjct: 181 SSGAAVAGRSPAGALWSVGALILWKFW 203

[Close]

BLAST of Carg12798 vs. ExPASy TrEMBL
Match: A0A5A7TYN2 (Protein NDR1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1251G00260 PE=4 SV=1)

HSP 1 Score: 307.4 bits (786), Expect = 4.6e-80
Identity = 152/206 (73.79%), Postives = 172/206 (83.50%), Query Frame = 0


Query: 1   MTEPGGCCRCCFSFILTSGFAALFLWLSLRTRKPKCSIEHFYIPALNQSLNSPLNS-TVS 60
           MTE G CC+CCF FI+T+GFAALFLWLSLRTRKPKCSIE FYIPALNQSLNS  NS T+ 
Sbjct: 1   MTESGWCCKCCFKFIITAGFAALFLWLSLRTRKPKCSIESFYIPALNQSLNSSSNSTTLY 60

Query: 61  FDLRLKNQNKDKSVFYDSLNLNLTLVGAAAGGSRRPLGNVTVPGFHQGRGKKAFRNETIE 120
           FDLRLKNQNKDKSV+YD++ LN TL+  A    RRP+GN+TVPGFHQGR KKA R E++E
Sbjct: 61  FDLRLKNQNKDKSVYYDTIYLNFTLLDEA----RRPVGNLTVPGFHQGRDKKALRKESVE 120

Query: 121 TRGVDWKAVSRNGAAVFRLDLATAVRFKILFWNTKRENLRVGAEFKVNEQGATEYP-GIT 180
            RGVDWKAVSRNG+ + RLDLATAVR+KIL W TKRENLR+G E KVN QG  + P GIT
Sbjct: 121 ARGVDWKAVSRNGSTIVRLDLATAVRYKILLWKTKRENLRLGTEIKVNGQGLKDNPHGIT 180

Query: 181 LSSGAAVPDGSPVRVIWSFWVFVLWK 205
           L+SGAA+P G+ VRVIWSFWVFV WK
Sbjct: 181 LNSGAAMPGGTLVRVIWSFWVFVWWK 202

[Close]

BLAST of Carg12798 vs. ExPASy TrEMBL
Match: A0A1S3BZM3 (protein NDR1-like OS=Cucumis melo OX=3656 GN=LOC103494933 PE=4 SV=1)

HSP 1 Score: 307.4 bits (786), Expect = 4.6e-80
Identity = 152/206 (73.79%), Postives = 172/206 (83.50%), Query Frame = 0


Query: 1   MTEPGGCCRCCFSFILTSGFAALFLWLSLRTRKPKCSIEHFYIPALNQSLNSPLNS-TVS 60
           MTE G CC+CCF FI+T+GFAALFLWLSLRTRKPKCSIE FYIPALNQSLNS  NS T+ 
Sbjct: 1   MTESGWCCKCCFKFIITAGFAALFLWLSLRTRKPKCSIESFYIPALNQSLNSSSNSTTLY 60

Query: 61  FDLRLKNQNKDKSVFYDSLNLNLTLVGAAAGGSRRPLGNVTVPGFHQGRGKKAFRNETIE 120
           FDLRLKNQNKDKSV+YD++ LN TL+  A    RRP+GN+TVPGFHQGR KKA R E++E
Sbjct: 61  FDLRLKNQNKDKSVYYDTIYLNFTLLDEA----RRPVGNLTVPGFHQGRDKKALRKESVE 120

Query: 121 TRGVDWKAVSRNGAAVFRLDLATAVRFKILFWNTKRENLRVGAEFKVNEQGATEYP-GIT 180
            RGVDWKAVSRNG+ + RLDLATAVR+KIL W TKRENLR+G E KVN QG  + P GIT
Sbjct: 121 ARGVDWKAVSRNGSTIVRLDLATAVRYKILLWKTKRENLRLGTEIKVNGQGLKDNPHGIT 180

Query: 181 LSSGAAVPDGSPVRVIWSFWVFVLWK 205
           L+SGAA+P G+ VRVIWSFWVFV WK
Sbjct: 181 LNSGAAMPGGTLVRVIWSFWVFVWWK 202

[Close]

BLAST of Carg12798 vs. TAIR 10
Match: AT3G20600.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family )

HSP 1 Score: 163.7 bits (413), Expect = 1.6e-40
Identity = 95/214 (44.39%), Postives = 127/214 (59.35%), Query Frame = 0


Query: 2   TEPG-GCCRCCFSFILTSGFAALFLWLSLRTRKPKCSIEHFYIPALNQSLNSPLNSTVSF 61
           TE G  CC CC SFI T+G  +LFLWLSLR  KPKCSI++F+IPAL +  NS  N+T++F
Sbjct: 8   TEGGRNCCTCCLSFIFTAGLTSLFLWLSLRADKPKCSIQNFFIPALGKDPNSRDNTTLNF 67

Query: 62  DLRLKNQNKDKSVFYDSLNLNLTLVGAAAGGSRR--PLGNVTVPGFHQGRGKKA------ 121
            +R  N NKDK ++YD ++LN + +      S     +GN TVP F+QG  KKA      
Sbjct: 68  MVRCDNPNKDKGIYYDDVHLNFSTINTTKINSSALVLVGNYTVPKFYQGHKKKAKKWGQV 127

Query: 122 --FRNETIETRGVDWKAVSRNGAAVFRLDLATAVRFKILFWNTKRENLRVGAEFKVNEQG 181
               N+T+       +AV  NG+AVFRLDL T VRFKI+FW TKR  + VGA+ +VN  G
Sbjct: 128 KPLNNQTV------LRAVLPNGSAVFRLDLKTQVRFKIVFWKTKRYGVEVGADVEVNGDG 187

Query: 182 A-TEYPGITL---SSGAAVPDGSPVRVIWSFWVF 201
              +  GI +    S   +    P+ V+ +  VF
Sbjct: 188 VKAQKKGIKMKKSDSSFPLRSSFPISVLMNLLVF 215

[Close]

BLAST of Carg12798 vs. TAIR 10
Match: AT3G20590.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family )

HSP 1 Score: 147.1 bits (370), Expect = 1.5e-35
Identity = 81/175 (46.29%), Postives = 110/175 (62.86%), Query Frame = 0


Query: 7   CCRCCFSFILTSGFAALFLWLSLRTRKPKCSIEHFYIPALNQSLNSPLNSTVSFDLRLKN 66
           CC C F FI T+   AL LWLSLR +KPKCSI++FYIPAL+++L+S  N+T++F +R  N
Sbjct: 14  CCTCFFKFIFTTRLGALILWLSLRAKKPKCSIQNFYIPALSKNLSSRDNTTLNFMVRCDN 73

Query: 67  QNKDKSVFYDSLNLNLTLVGAAAGGSRR--PLGNVTVPGFHQGRGKKA--------FRNE 126
            NKDK ++YD ++L  + +      S     + N TVP F+QG  KKA          N+
Sbjct: 74  PNKDKGIYYDDVHLTFSTINTTTTNSSDLVLVANYTVPKFYQGHKKKAKKWGQVWPLNNQ 133

Query: 127 TIETRGVDWKAVSRNGAAVFRLDLATAVRFKILFWNTK-RENLRVGAEFKVNEQG 171
           T+       +AV  NG+AVFRLDL T VRFKI+FW TK    ++VGA+ +VN  G
Sbjct: 134 TV------LRAVLPNGSAVFRLDLKTHVRFKIVFWKTKWYRRIKVGADVEVNGDG 182

[Close]

BLAST of Carg12798 vs. TAIR 10
Match: AT3G20610.1 (non-race specific disease resistance protein, putative )

HSP 1 Score: 119.4 bits (298), Expect = 3.4e-27
Identity = 73/190 (38.42%), Postives = 106/190 (55.79%), Query Frame = 0


Query: 13  SFILTSGFAALFLWLS-LRTRKPKCSIEHFYIPALNQSLNSPLNSTVSFDLRLKNQNKDK 72
           + +  S   AL LWLS L    P+CSI +FYIPALN+SL S  N+T++F +RLKN N  +
Sbjct: 19  TLLYVSFLLALCLWLSTLVHHIPRCSIHYFYIPALNKSLISSDNTTLNFMVRLKNINAKQ 78

Query: 73  SVFYDSLNLNLTLVGAAAGGSRRPLGNVTVPGFHQGRGKKA--------FRNETIETRGV 132
            ++Y+ L+L+ +        S   + N TVP F+QG  KKA        F N+T+     
Sbjct: 79  GIYYEDLHLSFS---TRINNSSLLVANYTVPRFYQGHEKKAKKWGQALPFNNQTV----- 138

Query: 133 DWKAVSRNGAAVFRLDLATAVRFKILFWNTKRENLRVGAEFKVNEQGATEYPGITLSSGA 192
             +AV  NG+A+FR+DL   V++K++ W TKR  L+     +VNE GAT+          
Sbjct: 139 -IQAVLPNGSAIFRVDLKMQVKYKVMSWKTKRYKLKASVNLEVNEDGATKVKDKEDGIKM 198

Query: 193 AVPDGSPVRV 194
            + D SP R+
Sbjct: 199 KISDSSPQRL 199

[Close]

BLAST of Carg12798 vs. TAIR 10
Match: AT4G05220.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family )

HSP 1 Score: 57.4 bits (137), Expect = 1.6e-08
Identity = 42/170 (24.71%), Postives = 71/170 (41.76%), Query Frame = 0


Query: 11  CFSFILT---SGFAALFLWLSLRTRKPKCSIEHFYIPALNQSLNSPLNSTVSFDLRLKNQ 70
           C  F+L     G  A  LWLSLR  +P+  I+ F +  L+Q      N+ ++F++ + N 
Sbjct: 47  CAMFLLVLFFVGVIAFILWLSLRPHRPRFHIQDFVVQGLDQPTGVE-NARIAFNVTILNP 106

Query: 71  NKDKSVFYDSL-------NLNLTLVGAAAGGSRRPLGNVTVPGFHQGRGKKAFRNETIET 130
           N+   V++DS+       +  + L+       ++P     V G   G       N     
Sbjct: 107 NQHMGVYFDSMEGSIYYKDQRVGLIPLLNPFFQQPTNTTIVTGTLTGASLTVNSN----- 166

Query: 131 RGVDWKAVSRNGAAVFRLDLATAVRFKILFWNTKRENLRVGAEFKVNEQG 171
           R  ++      G   FRLD+ + +RFK+  W +K   +       V   G
Sbjct: 167 RWTEFSNDRAQGTVGFRLDIVSTIRFKLHRWISKHHRMHANCNIVVGRDG 210

The following BLAST results are available for this feature:

BLAST of Carg12798 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7024897.1	9.1e-115	100.00	Protein NDR1, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022935836.1	2.6e-114	99.51	protein NDR1-like [Cucurbita moschata]	[more]
KAG6592022.1	4.5e-114	99.51	Protein NDR1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023535135.1	2.6e-106	94.66	protein NDR1-like [Cucurbita pepo subsp. pepo]	[more]
XP_022976581.1	5.5e-104	92.72	protein NDR1-like [Cucurbita maxima]	[more]

BLAST of Carg12798 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O48915	2.2e-39	44.39	Protein NDR1 OS=Arabidopsis thaliana OX=3702 GN=NDR1 PE=1 SV=1	[more]

BLAST of Carg12798 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F5U5	1.3e-114	99.51	protein NDR1-like OS=Cucurbita moschata OX=3662 GN=LOC111442624 PE=4 SV=1	[more]
A0A6J1IH99	2.7e-104	92.72	protein NDR1-like OS=Cucurbita maxima OX=3661 GN=LOC111476935 PE=4 SV=1	[more]
A0A6J1CEH8	1.4e-81	76.33	protein NDR1-like OS=Momordica charantia OX=3673 GN=LOC111010486 PE=4 SV=1	[more]
A0A5A7TYN2	4.6e-80	73.79	Protein NDR1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1251G0...	[more]
A0A1S3BZM3	4.6e-80	73.79	protein NDR1-like OS=Cucumis melo OX=3656 GN=LOC103494933 PE=4 SV=1	[more]

BLAST of Carg12798 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G20600.1	1.6e-40	44.39	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]
AT3G20590.1	1.5e-35	46.29	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]
AT3G20610.1	3.4e-27	38.42	non-race specific disease resistance protein, putative	[more]
AT4G05220.1	1.6e-08	24.71	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31415:SF52	LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY-RELATED	coord: 4..184
IPR044839	Protein NDR1-like	PANTHER	PTHR31415	OS05G0367900 PROTEIN	coord: 4..184

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg12798-RA	Carg12798-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0098542	defense response to other organism
cellular_component	GO:0016021	integral component of membrane