Carg12752 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg12752
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	short integuments 2, mitochondrial
Location	Carg_Chr07: 7943293 .. 7943769 (-)
RNA-Seq Expression	Carg12752
Synteny	Carg12752

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCACAGATTTAGTCTTAATGACCTCCGACCAAAAAGGAGGCCTCCCCTTCCAAATAAATCTGATGTGGTATACGTCGAGGTAAGGGAAGGATTTCTTATTAGACTCTTAAGAGTGTTTATGGCTTTCTATGCTAAAAAGAGAGAAAGACGTTAATTATTGTGTGGGTTTTTGTATAACCCCACCTTTGTTTGACTTTCATTCCTCTCCATGAAAGCGGTGTATAAATCTAAAAGGATAACTGTGTTCTTTTTCTCTGATTCATTTGACCAGGATCTTGTTACACAAGTTCAACGTGCACTCTACGCAACGTTGTCTGGATTTGATGGCGCAAATGTTGAAGATGAGAATGATTTAGAAAGTCTCATCGAAGTGCAGTTTGAAGCATTGCAGAAAGCAATGAAGATCACCTCACAAGGCAGCGGAAGCTCGTCTGAAAGTGTCAAAGAAACTACTTACCCTATTCAGGGCCGGTAA

mRNA sequence

ATGCACAGATTTAGTCTTAATGACCTCCGACCAAAAAGGAGGCCTCCCCTTCCAAATAAATCTGATGTGGTATACGTCGAGGATCTTGTTACACAAGTTCAACGTGCACTCTACGCAACGTTGTCTGGATTTGATGGCGCAAATGTTGAAGATGAGAATGATTTAGAAAGTCTCATCGAAGTGCAGTTTGAAGCATTGCAGAAAGCAATGAAGATCACCTCACAAGGCAGCGGAAGCTCGTCTGAAAGTGTCAAAGAAACTACTTACCCTATTCAGGGCCGGTAA

Coding sequence (CDS)

ATGCACAGATTTAGTCTTAATGACCTCCGACCAAAAAGGAGGCCTCCCCTTCCAAATAAATCTGATGTGGTATACGTCGAGGATCTTGTTACACAAGTTCAACGTGCACTCTACGCAACGTTGTCTGGATTTGATGGCGCAAATGTTGAAGATGAGAATGATTTAGAAAGTCTCATCGAAGTGCAGTTTGAAGCATTGCAGAAAGCAATGAAGATCACCTCACAAGGCAGCGGAAGCTCGTCTGAAAGTGTCAAAGAAACTACTTACCCTATTCAGGGCCGGTAA

Protein sequence

MHRFSLNDLRPKRRPPLPNKSDVVYVEDLVTQVQRALYATLSGFDGANVEDENDLESLIEVQFEALQKAMKITSQGSGSSSESVKETTYPIQGR

Homology

[Close]

BLAST of Carg12752 vs. NCBI nr
Match: KAG7027631.1 (Short integuments 2, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 185.3 bits (469), Expect = 2.5e-43
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0


Query: 1  MHRFSLNDLRPKRRPPLPNKSDVVYVEDLVTQVQRALYATLSGFDGANVEDENDLESLIE 60
          MHRFSLNDLRPKRRPPLPNKSDVVYVEDLVTQVQRALYATLSGFDGANVEDENDLESLIE
Sbjct: 1  MHRFSLNDLRPKRRPPLPNKSDVVYVEDLVTQVQRALYATLSGFDGANVEDENDLESLIE 60

Query: 61 VQFEALQKAMKITSQGSGSSSESVKETTYPIQGR 95
          VQFEALQKAMKITSQGSGSSSESVKETTYPIQGR
Sbjct: 61 VQFEALQKAMKITSQGSGSSSESVKETTYPIQGR 94

[Close]

BLAST of Carg12752 vs. NCBI nr
Match: KAG6595673.1 (Short integuments 2, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 138.3 bits (347), Expect = 3.5e-29
Identity = 71/72 (98.61%), Postives = 71/72 (98.61%), Query Frame = 0


Query: 1   MHRFSLNDLRPKRRPPLPNKSDVVYVEDLVTQVQRALYATLSGFDGANVEDENDLESLIE 60
           MHRFSLNDLRPKRRPPLPNKSDVVYVEDLVTQVQRALYATLSGFDG NVEDENDLESLIE
Sbjct: 267 MHRFSLNDLRPKRRPPLPNKSDVVYVEDLVTQVQRALYATLSGFDG-NVEDENDLESLIE 326

Query: 61  VQFEALQKAMKI 73
           VQFEALQKAMKI
Sbjct: 327 VQFEALQKAMKI 337

[Close]

BLAST of Carg12752 vs. NCBI nr
Match: XP_023518228.1 (short integuments 2, mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 137.5 bits (345), Expect = 5.9e-29
Identity = 70/77 (90.91%), Postives = 73/77 (94.81%), Query Frame = 0


Query: 1   MHRFSLNDLRPKRRPPLPNKSDVVYVEDLVTQVQRALYATLSGFDGANVEDENDLESLIE 60
           MHRFSLNDLRPKRRPPLPNKSDVVYVEDLVTQVQRALYATLSGFDG NVEDENDLESLIE
Sbjct: 267 MHRFSLNDLRPKRRPPLPNKSDVVYVEDLVTQVQRALYATLSGFDG-NVEDENDLESLIE 326

Query: 61  VQFEALQKAMKITSQGS 78
           +QFEALQKAMKI  + +
Sbjct: 327 LQFEALQKAMKIAHKAA 342

[Close]

BLAST of Carg12752 vs. NCBI nr
Match: XP_022924906.1 (short integuments 2, mitochondrial [Cucurbita moschata] >XP_022924907.1 short integuments 2, mitochondrial [Cucurbita moschata] >XP_022924908.1 short integuments 2, mitochondrial [Cucurbita moschata])

HSP 1 Score: 136.7 bits (343), Expect = 1.0e-28
Identity = 70/72 (97.22%), Postives = 70/72 (97.22%), Query Frame = 0


Query: 1   MHRFSLNDLRPKRRPPLPNKSDVVYVEDLVTQVQRALYATLSGFDGANVEDENDLESLIE 60
           MHRFSLNDLRPKRRPPLPNKSDVVYVEDLVTQVQRALYAT SGFDG NVEDENDLESLIE
Sbjct: 267 MHRFSLNDLRPKRRPPLPNKSDVVYVEDLVTQVQRALYATFSGFDG-NVEDENDLESLIE 326

Query: 61  VQFEALQKAMKI 73
           VQFEALQKAMKI
Sbjct: 327 VQFEALQKAMKI 337

[Close]

BLAST of Carg12752 vs. NCBI nr
Match: XP_022966362.1 (short integuments 2, mitochondrial [Cucurbita maxima])

HSP 1 Score: 134.8 bits (338), Expect = 3.8e-28
Identity = 69/72 (95.83%), Postives = 70/72 (97.22%), Query Frame = 0


Query: 1   MHRFSLNDLRPKRRPPLPNKSDVVYVEDLVTQVQRALYATLSGFDGANVEDENDLESLIE 60
           MHRFSLNDLRPKRRPPLPNKSDVVYVEDLVTQVQRALYA LSGFDG NVEDENDLESLIE
Sbjct: 284 MHRFSLNDLRPKRRPPLPNKSDVVYVEDLVTQVQRALYAMLSGFDG-NVEDENDLESLIE 343

Query: 61  VQFEALQKAMKI 73
           +QFEALQKAMKI
Sbjct: 344 LQFEALQKAMKI 354

[Close]

BLAST of Carg12752 vs. ExPASy Swiss-Prot
Match: Q8L607 (Short integuments 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=SIN2 PE=1 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 8.1e-13
Identity = 41/74 (55.41%), Postives = 54/74 (72.97%), Query Frame = 0


Query: 4   FSLNDLRPKRRPPLPNKSDVVYVEDLVTQVQRALYATLSGFDGANVEDENDLESLIEVQF 63
           ++L DLR  +R   P+ S + YV D++++VQR+LY TLS FDG + EDENDLE LIE QF
Sbjct: 272 YNLKDLR-HQRTKQPDSSALHYVGDMISEVQRSLYITLSEFDG-DTEDENDLECLIEQQF 331

Query: 64  EALQKAMKITSQGS 78
           E LQKA+KI  + S
Sbjct: 332 EVLQKALKIPHKAS 343

[Close]

BLAST of Carg12752 vs. ExPASy TrEMBL
Match: A0A6J1EAB7 (short integuments 2, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111432314 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 4.9e-29
Identity = 70/72 (97.22%), Postives = 70/72 (97.22%), Query Frame = 0


Query: 1   MHRFSLNDLRPKRRPPLPNKSDVVYVEDLVTQVQRALYATLSGFDGANVEDENDLESLIE 60
           MHRFSLNDLRPKRRPPLPNKSDVVYVEDLVTQVQRALYAT SGFDG NVEDENDLESLIE
Sbjct: 267 MHRFSLNDLRPKRRPPLPNKSDVVYVEDLVTQVQRALYATFSGFDG-NVEDENDLESLIE 326

Query: 61  VQFEALQKAMKI 73
           VQFEALQKAMKI
Sbjct: 327 VQFEALQKAMKI 337

[Close]

BLAST of Carg12752 vs. ExPASy TrEMBL
Match: A0A6J1HMR9 (short integuments 2, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111466034 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 1.9e-28
Identity = 69/72 (95.83%), Postives = 70/72 (97.22%), Query Frame = 0


Query: 1   MHRFSLNDLRPKRRPPLPNKSDVVYVEDLVTQVQRALYATLSGFDGANVEDENDLESLIE 60
           MHRFSLNDLRPKRRPPLPNKSDVVYVEDLVTQVQRALYA LSGFDG NVEDENDLESLIE
Sbjct: 284 MHRFSLNDLRPKRRPPLPNKSDVVYVEDLVTQVQRALYAMLSGFDG-NVEDENDLESLIE 343

Query: 61  VQFEALQKAMKI 73
           +QFEALQKAMKI
Sbjct: 344 LQFEALQKAMKI 354

[Close]

BLAST of Carg12752 vs. ExPASy TrEMBL
Match: A0A6J1DRI9 (short integuments 2, mitochondrial isoform X1 OS=Momordica charantia OX=3673 GN=LOC111023602 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 3.4e-22
Identity = 59/71 (83.10%), Postives = 64/71 (90.14%), Query Frame = 0


Query: 2   HRFSLNDLRPKRRPPLPNKSDVVYVEDLVTQVQRALYATLSGFDGANVEDENDLESLIEV 61
           H+F+LNDLRPKR  P  NKSDVVYVEDLVT+VQRALY +LS FDG NVEDENDLESLIE+
Sbjct: 277 HKFNLNDLRPKRGAPPTNKSDVVYVEDLVTEVQRALYTSLSEFDG-NVEDENDLESLIEL 336

Query: 62  QFEALQKAMKI 73
           QFEALQKAMKI
Sbjct: 337 QFEALQKAMKI 346

[Close]

BLAST of Carg12752 vs. ExPASy TrEMBL
Match: A0A6J1DR97 (short integuments 2, mitochondrial isoform X2 OS=Momordica charantia OX=3673 GN=LOC111023602 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 3.4e-22
Identity = 59/71 (83.10%), Postives = 64/71 (90.14%), Query Frame = 0


Query: 2   HRFSLNDLRPKRRPPLPNKSDVVYVEDLVTQVQRALYATLSGFDGANVEDENDLESLIEV 61
           H+F+LNDLRPKR  P  NKSDVVYVEDLVT+VQRALY +LS FDG NVEDENDLESLIE+
Sbjct: 176 HKFNLNDLRPKRGAPPTNKSDVVYVEDLVTEVQRALYTSLSEFDG-NVEDENDLESLIEL 235

Query: 62  QFEALQKAMKI 73
           QFEALQKAMKI
Sbjct: 236 QFEALQKAMKI 245

[Close]

BLAST of Carg12752 vs. ExPASy TrEMBL
Match: A0A5A7ULU0 (Short integuments 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold697G00560 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 4.9e-21
Identity = 59/72 (81.94%), Postives = 64/72 (88.89%), Query Frame = 0


Query: 2   HRFSLNDLRPKRRPPLPNKSDVVYVEDLVTQVQRALYATLSGFDGANVEDENDLESLIEV 61
           HRF+LNDL+PKRR  LPNKSD VYVEDLVT+VQ ALY TLS FDG NVEDEN LESLIEV
Sbjct: 270 HRFNLNDLQPKRR-ALPNKSDAVYVEDLVTEVQCALYTTLSEFDG-NVEDENGLESLIEV 329

Query: 62  QFEALQKAMKIT 74
           QFEALQKAMK++
Sbjct: 330 QFEALQKAMKVS 339

[Close]

BLAST of Carg12752 vs. TAIR 10
Match: AT2G41670.1 (P-loop containing nucleoside triphosphate hydrolases superfamily protein )

HSP 1 Score: 74.3 bits (181), Expect = 5.7e-14
Identity = 41/74 (55.41%), Postives = 54/74 (72.97%), Query Frame = 0


Query: 4   FSLNDLRPKRRPPLPNKSDVVYVEDLVTQVQRALYATLSGFDGANVEDENDLESLIEVQF 63
           ++L DLR  +R   P+ S + YV D++++VQR+LY TLS FDG + EDENDLE LIE QF
Sbjct: 272 YNLKDLR-HQRTKQPDSSALHYVGDMISEVQRSLYITLSEFDG-DTEDENDLECLIEQQF 331

Query: 64  EALQKAMKITSQGS 78
           E LQKA+KI  + S
Sbjct: 332 EVLQKALKIPHKAS 343

The following BLAST results are available for this feature:

BLAST of Carg12752 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7027631.1	2.5e-43	100.00	Short integuments 2, mitochondrial, partial [Cucurbita argyrosperma subsp. argyr...	[more]
KAG6595673.1	3.5e-29	98.61	Short integuments 2, mitochondrial, partial [Cucurbita argyrosperma subsp. soror...	[more]
XP_023518228.1	5.9e-29	90.91	short integuments 2, mitochondrial [Cucurbita pepo subsp. pepo]	[more]
XP_022924906.1	1.0e-28	97.22	short integuments 2, mitochondrial [Cucurbita moschata] >XP_022924907.1 short in...	[more]
XP_022966362.1	3.8e-28	95.83	short integuments 2, mitochondrial [Cucurbita maxima]	[more]

BLAST of Carg12752 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L607	8.1e-13	55.41	Short integuments 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=SIN2 PE=1 ...	[more]

BLAST of Carg12752 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EAB7	4.9e-29	97.22	short integuments 2, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111432314...	[more]
A0A6J1HMR9	1.9e-28	95.83	short integuments 2, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111466034 P...	[more]
A0A6J1DRI9	3.4e-22	83.10	short integuments 2, mitochondrial isoform X1 OS=Momordica charantia OX=3673 GN=...	[more]
A0A6J1DR97	3.4e-22	83.10	short integuments 2, mitochondrial isoform X2 OS=Momordica charantia OX=3673 GN=...	[more]
A0A5A7ULU0	4.9e-21	81.94	Short integuments 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold697G...	[more]

BLAST of Carg12752 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G41670.1	5.7e-14	55.41	P-loop containing nucleoside triphosphate hydrolases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..17
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 72..94
None	No IPR available	PANTHER	PTHR45782:SF7	SHORT INTEGUMENTS 2, MITOCHONDRIAL-LIKE	coord: 3..80
None	No IPR available	PANTHER	PTHR45782	MITOCHONDRIAL RIBOSOME-ASSOCIATED GTPASE 1	coord: 3..80

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg12752-RA	Carg12752-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000911	cytokinesis by cell plate formation
biological_process	GO:0048481	plant ovule development
cellular_component	GO:0005743	mitochondrial inner membrane
molecular_function	GO:0005525	GTP binding