Carg12743 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg12743
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	40S ribosomal protein s2
Location	Carg_Chr07: 7879821 .. 7881607 (+)
RNA-Seq Expression	Carg12743
Synteny	Carg12743

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAACCCTAGCTCCCAATAACTCCATATATAAATTCCTTCTTTAGGGTTGTTTCTCCCACTCTCTTTCAAGCTGCAATCTTTCGTTAGTTCTCTCGAGCCGCATTTTTGAATCTTAAATATGGCTGAAAGAGGAGGAGGAGACCGCGGTGGCTTCGGCAGAGGTTTTGGCGGCAGAGGTCGTGGTGGCGACCGTGGCCGTGGCCGTCGTCGTGCTGGCCGCCGTGACGAAGAGGAGAAGTGGGTTCCAGTCACCAAGCTAGGGCGGCTCGTCAAGGAAGGTAAGATTCAGTCACTTGAACAGATTTACCTCCACTCTCTTCCTATCAAGGAGCACCAGATCGTTGATACTCTCATTGGACCTAGCCTCAAGGATGAGGTTATGAAGATCATGCCGGTGCAGAAACAGACCCGGGCTGGACAGAGGACCCGTTTTAAGGCCTTCGTTGTCGTCGGTGACGGCAATGGGCATGTTGGATTGGGAGTTAAGTGCAGCAAGGAGGTTGCTACTGCTATCCGTGGTTCGATTATATTGGCCAAGTTGTCGGTGATTCCTGTGAGGAGGGGTTACTGGGGTAACAAGATCGGTAAGCCTCATACTGTGCCTTGCAAGGTTACTGGAAAGTGTGGCTCTGTTACAGTCCGTATGGTTCCTGCTCCTCGTGGTGCCGGTATCGTCGCGGCTAGGGTTCCCAAGAAGGTGCTTCAATTCGCTGGAATTGATGATGTTTTCACTTCTTCCAGGGGATCAACCAAGACACTTGGAAACTTTGTGAAGGTATGTTCGATTTTGATGCATTGTCTATATCATCCGTTCTGTTATATCTATATGGCTGGGATTTAATGTGTCCATTATAATAGCTTGTATGTCTTGATTCTGCTGGTTCGTGAAATTATGTATATATTAAGTAGTTGATTCTGGTTGATTGTATTAGTGATCTGGATTGTTCTTCAATCGTTTTTATAACATTTATGATAATCAAGTGGAATTAACTATGTTTTGGTTTTAAATATGCCACTTCTATGATCATGCTAGAAAACTTCAAATATTTCTTGTGATTAGATTACGTGGATTGAATTTCTCGTGAAATTGTGCATATGTACTGTGCTGTGAAGGTGGAAGATTTCTGTTCTAAACTGGGTTTTAGTTACTCGAACAAATTCTTTATTAGTATGGCCATTTTCTGATGTTTGTTGGAAGTTTTTGAGTTGATTTCTTCTGTTTATACTAATGCTTCCATTTTGGCAGGCAACCTTTGATTGCCTATTGAAAACCTATGGTTTCCTGACACCCGAGTTCTGGAAGGAGACTCGCTTCACAAAATCTCCATTCCAAGAGCACACGGATCTGTTGGCTAAACCTACTGTGAAGGCATTGTTGTTGGATGATGCTGAGAGGGTTAATGCTTAAGGGGAGCATAGATATGGTATGGTTTCGAGAAAAGAAGAATGTTTTTGTTAGGAACTCTTATAGTATATGCTCTTCAGTTGAGTTCATTTACTTTCAAGGATAGTGTGTTATTTATTTCCTAATGCTACTTGACTTTGTTTTTGTTTTTGTTTCTGAATCCTATGGCATAAAGCTTGATTTTAATGAATGCACTAATTTTTCTTACAAGAACACAACACCAAAATTAATCGTATCATCAATTGGAATTAATGTGTTATGGTATGCTGATTTGATCTGTGTCCCTAAATGGTATTTGGGACTGAAATTTGCATGAAAGCAATGAACTTTTAAGTGTACGAAGTTAACCCAAAAACTTCATAACCATCTAGGAAATGTTTT

mRNA sequence

AAAACCCTAGCTCCCAATAACTCCATATATAAATTCCTTCTTTAGGGTTGTTTCTCCCACTCTCTTTCAAGCTGCAATCTTTCGTTAGTTCTCTCGAGCCGCATTTTTGAATCTTAAATATGGCTGAAAGAGGAGGAGGAGACCGCGGTGGCTTCGGCAGAGGTTTTGGCGGCAGAGGTCGTGGTGGCGACCGTGGCCGTGGCCGTCGTCGTGCTGGCCGCCGTGACGAAGAGGAGAAGTGGGTTCCAGTCACCAAGCTAGGGCGGCTCGTCAAGGAAGGTAAGATTCAGTCACTTGAACAGATTTACCTCCACTCTCTTCCTATCAAGGAGCACCAGATCGTTGATACTCTCATTGGACCTAGCCTCAAGGATGAGGTTATGAAGATCATGCCGGTGCAGAAACAGACCCGGGCTGGACAGAGGACCCGTTTTAAGGCCTTCGTTGTCGTCGGTGACGGCAATGGGCATGTTGGATTGGGAGTTAAGTGCAGCAAGGAGGTTGCTACTGCTATCCGTGGTTCGATTATATTGGCCAAGTTGTCGGTGATTCCTGTGAGGAGGGGTTACTGGGGTAACAAGATCGGTAAGCCTCATACTGTGCCTTGCAAGGTTACTGGAAAGTGTGGCTCTGTTACAGTCCGTATGGTTCCTGCTCCTCGTGGTGCCGGTATCGTCGCGGCTAGGGTTCCCAAGAAGGTGCTTCAATTCGCTGGAATTGATGATGTTTTCACTTCTTCCAGGGGATCAACCAAGACACTTGGAAACTTTGTGAAGGCAACCTTTGATTGCCTATTGAAAACCTATGGTTTCCTGACACCCGAGTTCTGGAAGGAGACTCGCTTCACAAAATCTCCATTCCAAGAGCACACGGATCTGTTGGCTAAACCTACTGTGAAGGCATTGTTGTTGGATGATGCTGAGAGGGTTAATGCTTAAGGGGAGCATAGATATGGTATGGTTTCGAGAAAAGAAGAATGTTTTTGTTAGGAACTCTTATAGTATATGCTCTTCAGTTGAGTTCATTTACTTTCAAGGATAGTGTGTTATTTATTTCCTAATGCTACTTGACTTTGTTTTTGTTTTTGTTTCTGAATCCTATGGCATAAAGCTTGATTTTAATGAATGCACTAATTTTTCTTACAAGAACACAACACCAAAATTAATCGTATCATCAATTGGAATTAATGTGTTATGGTATGCTGATTTGATCTGTGTCCCTAAATGGTATTTGGGACTGAAATTTGCATGAAAGCAATGAACTTTTAAGTGTACGAAGTTAACCCAAAAACTTCATAACCATCTAGGAAATGTTTT

Coding sequence (CDS)

ATGGCTGAAAGAGGAGGAGGAGACCGCGGTGGCTTCGGCAGAGGTTTTGGCGGCAGAGGTCGTGGTGGCGACCGTGGCCGTGGCCGTCGTCGTGCTGGCCGCCGTGACGAAGAGGAGAAGTGGGTTCCAGTCACCAAGCTAGGGCGGCTCGTCAAGGAAGGTAAGATTCAGTCACTTGAACAGATTTACCTCCACTCTCTTCCTATCAAGGAGCACCAGATCGTTGATACTCTCATTGGACCTAGCCTCAAGGATGAGGTTATGAAGATCATGCCGGTGCAGAAACAGACCCGGGCTGGACAGAGGACCCGTTTTAAGGCCTTCGTTGTCGTCGGTGACGGCAATGGGCATGTTGGATTGGGAGTTAAGTGCAGCAAGGAGGTTGCTACTGCTATCCGTGGTTCGATTATATTGGCCAAGTTGTCGGTGATTCCTGTGAGGAGGGGTTACTGGGGTAACAAGATCGGTAAGCCTCATACTGTGCCTTGCAAGGTTACTGGAAAGTGTGGCTCTGTTACAGTCCGTATGGTTCCTGCTCCTCGTGGTGCCGGTATCGTCGCGGCTAGGGTTCCCAAGAAGGTGCTTCAATTCGCTGGAATTGATGATGTTTTCACTTCTTCCAGGGGATCAACCAAGACACTTGGAAACTTTGTGAAGGCAACCTTTGATTGCCTATTGAAAACCTATGGTTTCCTGACACCCGAGTTCTGGAAGGAGACTCGCTTCACAAAATCTCCATTCCAAGAGCACACGGATCTGTTGGCTAAACCTACTGTGAAGGCATTGTTGTTGGATGATGCTGAGAGGGTTAATGCTTAA

Protein sequence

MAERGGGDRGGFGRGFGGRGRGGDRGRGRRRAGRRDEEEKWVPVTKLGRLVKEGKIQSLEQIYLHSLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPEFWKETRFTKSPFQEHTDLLAKPTVKALLLDDAERVNA

Homology

[Close]

BLAST of Carg12743 vs. NCBI nr
Match: XP_022925174.1 (40S ribosomal protein S2-4-like [Cucurbita moschata] >KAG6595664.1 40S ribosomal protein S2-4, partial [Cucurbita argyrosperma subsp. sororia] >KAG7027622.1 40S ribosomal protein S2-4 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 531.6 bits (1368), Expect = 4.1e-147
Identity = 272/272 (100.00%), Postives = 272/272 (100.00%), Query Frame = 0


Query: 1   MAERGGGDRGGFGRGFGGRGRGGDRGRGRRRAGRRDEEEKWVPVTKLGRLVKEGKIQSLE 60
           MAERGGGDRGGFGRGFGGRGRGGDRGRGRRRAGRRDEEEKWVPVTKLGRLVKEGKIQSLE
Sbjct: 1   MAERGGGDRGGFGRGFGGRGRGGDRGRGRRRAGRRDEEEKWVPVTKLGRLVKEGKIQSLE 60

Query: 61  QIYLHSLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGL 120
           QIYLHSLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGL
Sbjct: 61  QIYLHSLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGL 120

Query: 121 GVKCSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAP 180
           GVKCSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAP
Sbjct: 121 GVKCSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAP 180

Query: 181 RGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPEFWKET 240
           RGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPEFWKET
Sbjct: 181 RGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPEFWKET 240

Query: 241 RFTKSPFQEHTDLLAKPTVKALLLDDAERVNA 273
           RFTKSPFQEHTDLLAKPTVKALLLDDAERVNA
Sbjct: 241 RFTKSPFQEHTDLLAKPTVKALLLDDAERVNA 272

[Close]

BLAST of Carg12743 vs. NCBI nr
Match: XP_022966425.1 (40S ribosomal protein S2-4-like [Cucurbita maxima])

HSP 1 Score: 530.4 bits (1365), Expect = 9.1e-147
Identity = 271/271 (100.00%), Postives = 271/271 (100.00%), Query Frame = 0


Query: 1   MAERGGGDRGGFGRGFGGRGRGGDRGRGRRRAGRRDEEEKWVPVTKLGRLVKEGKIQSLE 60
           MAERGGGDRGGFGRGFGGRGRGGDRGRGRRRAGRRDEEEKWVPVTKLGRLVKEGKIQSLE
Sbjct: 1   MAERGGGDRGGFGRGFGGRGRGGDRGRGRRRAGRRDEEEKWVPVTKLGRLVKEGKIQSLE 60

Query: 61  QIYLHSLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGL 120
           QIYLHSLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGL
Sbjct: 61  QIYLHSLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGL 120

Query: 121 GVKCSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAP 180
           GVKCSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAP
Sbjct: 121 GVKCSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAP 180

Query: 181 RGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPEFWKET 240
           RGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPEFWKET
Sbjct: 181 RGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPEFWKET 240

Query: 241 RFTKSPFQEHTDLLAKPTVKALLLDDAERVN 272
           RFTKSPFQEHTDLLAKPTVKALLLDDAERVN
Sbjct: 241 RFTKSPFQEHTDLLAKPTVKALLLDDAERVN 271

[Close]

BLAST of Carg12743 vs. NCBI nr
Match: XP_022928633.1 (40S ribosomal protein S2-4-like [Cucurbita moschata] >XP_022967881.1 40S ribosomal protein S2-4-like [Cucurbita maxima] >XP_023518394.1 40S ribosomal protein S2-4-like [Cucurbita pepo subsp. pepo] >XP_023544834.1 40S ribosomal protein S2-4-like [Cucurbita pepo subsp. pepo] >KAG6603223.1 40S ribosomal protein S2-4, partial [Cucurbita argyrosperma subsp. sororia] >KAG7033531.1 40S ribosomal protein S2-4 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 526.2 bits (1354), Expect = 1.7e-145
Identity = 271/272 (99.63%), Postives = 271/272 (99.63%), Query Frame = 0


Query: 1   MAERGGGDRGGFGRGFGGRGRGGDRGRGRRRAGRRDEEEKWVPVTKLGRLVKEGKIQSLE 60
           MAER GGDRGGFGRGFGGRGRGGDRGRGRRRAGRRDEEEKWVPVTKLGRLVKEGKIQSLE
Sbjct: 1   MAER-GGDRGGFGRGFGGRGRGGDRGRGRRRAGRRDEEEKWVPVTKLGRLVKEGKIQSLE 60

Query: 61  QIYLHSLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGL 120
           QIYLHSLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGL
Sbjct: 61  QIYLHSLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGL 120

Query: 121 GVKCSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAP 180
           GVKCSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAP
Sbjct: 121 GVKCSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAP 180

Query: 181 RGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPEFWKET 240
           RGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPEFWKET
Sbjct: 181 RGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPEFWKET 240

Query: 241 RFTKSPFQEHTDLLAKPTVKALLLDDAERVNA 273
           RFTKSPFQEHTDLLAKPTVKALLLDDAERVNA
Sbjct: 241 RFTKSPFQEHTDLLAKPTVKALLLDDAERVNA 271

[Close]

BLAST of Carg12743 vs. NCBI nr
Match: XP_008460763.1 (PREDICTED: 40S ribosomal protein S2-4-like [Cucumis melo] >KAA0056140.1 40S ribosomal protein S2-4-like [Cucumis melo var. makuwa] >TYK14145.1 40S ribosomal protein S2-4-like [Cucumis melo var. makuwa])

HSP 1 Score: 518.8 bits (1335), Expect = 2.7e-143
Identity = 267/272 (98.16%), Postives = 270/272 (99.26%), Query Frame = 0


Query: 1   MAERGGGDRGGFGRGFGGRGRGGDRGRGRRRAGRRDEEEKWVPVTKLGRLVKEGKIQSLE 60
           MAER GGDRGGFGRGFGGRGRGGDRGRGRRRAGRRDEEEKWVPVTKLGRLVKEGKIQSLE
Sbjct: 1   MAER-GGDRGGFGRGFGGRGRGGDRGRGRRRAGRRDEEEKWVPVTKLGRLVKEGKIQSLE 60

Query: 61  QIYLHSLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGL 120
           QIYLHSLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGL
Sbjct: 61  QIYLHSLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGL 120

Query: 121 GVKCSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAP 180
           GVKCSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAP
Sbjct: 121 GVKCSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAP 180

Query: 181 RGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPEFWKET 240
           RGAGIVAARVPKKVLQFAGI+DVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPEFW+ET
Sbjct: 181 RGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPEFWRET 240

Query: 241 RFTKSPFQEHTDLLAKPTVKALLLDDAERVNA 273
           RFTKSPFQEHTDLLAKPTVKALLL+DAERV A
Sbjct: 241 RFTKSPFQEHTDLLAKPTVKALLLEDAERVAA 271

[Close]

BLAST of Carg12743 vs. NCBI nr
Match: XP_038882736.1 (40S ribosomal protein S2-4-like [Benincasa hispida])

HSP 1 Score: 518.1 bits (1333), Expect = 4.7e-143
Identity = 265/271 (97.79%), Postives = 269/271 (99.26%), Query Frame = 0


Query: 1   MAERGGGDRGGFGRGFGGRGRGGDRGRGRRRAGRRDEEEKWVPVTKLGRLVKEGKIQSLE 60
           MAER GGDRGGFGRGFGGRGRGGDRGRGRRRAGRRDEEEKWVPVTKLGRLVKEGKIQSLE
Sbjct: 1   MAER-GGDRGGFGRGFGGRGRGGDRGRGRRRAGRRDEEEKWVPVTKLGRLVKEGKIQSLE 60

Query: 61  QIYLHSLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGL 120
           QIYLHSLPIKEHQIVDTL+GPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGL
Sbjct: 61  QIYLHSLPIKEHQIVDTLVGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGL 120

Query: 121 GVKCSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAP 180
           GVKCSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAP
Sbjct: 121 GVKCSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAP 180

Query: 181 RGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPEFWKET 240
           RGAGIVAARVPKKVLQFAGI+DVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPEFW+ET
Sbjct: 181 RGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPEFWRET 240

Query: 241 RFTKSPFQEHTDLLAKPTVKALLLDDAERVN 272
           RFTKSPFQEHTDLLAKPTVKALLL+D ERVN
Sbjct: 241 RFTKSPFQEHTDLLAKPTVKALLLEDPERVN 270

[Close]

BLAST of Carg12743 vs. ExPASy Swiss-Prot
Match: Q9SCM3 (40S ribosomal protein S2-4 OS=Arabidopsis thaliana OX=3702 GN=RPS2D PE=2 SV=1)

HSP 1 Score: 450.3 bits (1157), Expect = 1.6e-125
Identity = 235/266 (88.35%), Postives = 247/266 (92.86%), Query Frame = 0


Query: 1   MAERG---GGDRGGFGRGFGGR--GRGGDRGRGRRRAGRRDEEEKWVPVTKLGRLVKEGK 60
           MAERG   GGDRG FGRGFGGR  GRGG RGRG RRAGR  EEEKWVPVTKLGRLVKEGK
Sbjct: 1   MAERGVERGGDRGDFGRGFGGRGGGRGGPRGRG-RRAGRAPEEEKWVPVTKLGRLVKEGK 60

Query: 61  IQSLEQIYLHSLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGN 120
           I  +EQIYLHSLP+KE+QI+D L+GPSLKDEVMKIMPVQKQTRAGQRTRFKAF+VVGD N
Sbjct: 61  ITKIEQIYLHSLPVKEYQIIDLLVGPSLKDEVMKIMPVQKQTRAGQRTRFKAFIVVGDSN 120

Query: 121 GHVGLGVKCSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVR 180
           GHVGLGVKCSKEVATAIRG+IILAKLSV+P+RRGYWGNKIGKPHTVPCKVTGKCGSVTVR
Sbjct: 121 GHVGLGVKCSKEVATAIRGAIILAKLSVVPIRRGYWGNKIGKPHTVPCKVTGKCGSVTVR 180

Query: 181 MVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPE 240
           MVPAPRG+GIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCL KTYGFLTPE
Sbjct: 181 MVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLQKTYGFLTPE 240

Query: 241 FWKETRFTKSPFQEHTD-LLAKPTVK 261
           FWKETRF+KSP+QEHTD LL  P VK
Sbjct: 241 FWKETRFSKSPYQEHTDFLLIPPGVK 265

[Close]

BLAST of Carg12743 vs. ExPASy Swiss-Prot
Match: P49688 (40S ribosomal protein S2-3 OS=Arabidopsis thaliana OX=3702 GN=RPS2C PE=1 SV=2)

HSP 1 Score: 440.3 bits (1131), Expect = 1.6e-122
Identity = 228/268 (85.07%), Postives = 241/268 (89.93%), Query Frame = 0


Query: 1   MAERG-------GGDRGGFGRGFGGRGRGGDR------GRGRRRAGRRDEEEKWVPVTKL 60
           MAERG       GG+RG FGRGFGGRG  GDR      GRG RR GR  EEEKWVPVTKL
Sbjct: 1   MAERGGERGVERGGERGDFGRGFGGRGGRGDRGGRGRGGRGGRRGGRASEEEKWVPVTKL 60

Query: 61  GRLVKEGKIQSLEQIYLHSLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKA 120
           GRLV  G I+ +EQIYLHSLP+KE+QI+D LIGP+LKDEVMKIMPVQKQTRAGQRTRFKA
Sbjct: 61  GRLVAAGHIKQIEQIYLHSLPVKEYQIIDMLIGPTLKDEVMKIMPVQKQTRAGQRTRFKA 120

Query: 121 FVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTG 180
           FVVVGDGNGHVGLGVKCSKEVATAIRG+IILAKLSV+PVRRGYWGNKIGKPHTVPCKVTG
Sbjct: 121 FVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTG 180

Query: 181 KCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLLK 240
           KCGSVTVRMVPAPRG+GIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCL K
Sbjct: 181 KCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLQK 240

Query: 241 TYGFLTPEFWKETRFTKSPFQEHTDLLA 256
           TYGFLTPEFWKETRF++SP+QEHTD LA
Sbjct: 241 TYGFLTPEFWKETRFSRSPYQEHTDFLA 268

[Close]

BLAST of Carg12743 vs. ExPASy Swiss-Prot
Match: Q8L8Y0 (40S ribosomal protein S2-1 OS=Arabidopsis thaliana OX=3702 GN=RPS2A PE=2 SV=2)

HSP 1 Score: 438.0 bits (1125), Expect = 8.0e-122
Identity = 229/274 (83.58%), Postives = 242/274 (88.32%), Query Frame = 0


Query: 1   MAERG-------GGDRGGFGRGFGGRGRGGDRGRGR------RRAGRRDEEEKWVPVTKL 60
           MAERG       GGDRG FGRGFGG GRGG RGR R      RR GR  EE KWVPVTKL
Sbjct: 1   MAERGGEGGAERGGDRGDFGRGFGG-GRGGGRGRDRGPRGRGRRGGRASEETKWVPVTKL 60

Query: 61  GRLVKEGKIQSLEQIYLHSLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKA 120
           GRLV + KI  LEQIYLHSLP+KE+QI+D L+GP+LKDEVMKIMPVQKQTRAGQRTRFKA
Sbjct: 61  GRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKA 120

Query: 121 FVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTG 180
           FVVVGDGNGHVGLGVKCSKEVATAIRG+IILAKLSV+PVRRGYWGNKIGKPHTVPCKVTG
Sbjct: 121 FVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTG 180

Query: 181 KCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLLK 240
           KCGSVTVRMVPAPRG+GIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCL K
Sbjct: 181 KCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLQK 240

Query: 241 TYGFLTPEFWKETRFTKSPFQEHTDLLAKPTVKA 262
           TYGFLTPEFWKETRF++SP+QEHTD L+   V A
Sbjct: 241 TYGFLTPEFWKETRFSRSPYQEHTDFLSTKAVSA 273

[Close]

BLAST of Carg12743 vs. ExPASy Swiss-Prot
Match: Q93VB8 (40S ribosomal protein S2-2 OS=Arabidopsis thaliana OX=3702 GN=RPS2B PE=2 SV=1)

HSP 1 Score: 438.0 bits (1125), Expect = 8.0e-122
Identity = 229/274 (83.58%), Postives = 242/274 (88.32%), Query Frame = 0


Query: 1   MAERG-------GGDRGGFGRGFGGRGRGGDRGRGR------RRAGRRDEEEKWVPVTKL 60
           MAERG       GGDRG FGRGFGG GRGG RGR R      RR GR  EE KWVPVTKL
Sbjct: 1   MAERGGESGAERGGDRGDFGRGFGG-GRGGGRGRDRGPRGRGRRGGRASEETKWVPVTKL 60

Query: 61  GRLVKEGKIQSLEQIYLHSLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKA 120
           GRLV + KI  LEQIYLHSLP+KE+QI+D L+GP+LKDEVMKIMPVQKQTRAGQRTRFKA
Sbjct: 61  GRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKA 120

Query: 121 FVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTG 180
           FVVVGDGNGHVGLGVKCSKEVATAIRG+IILAKLSV+PVRRGYWGNKIGKPHTVPCKVTG
Sbjct: 121 FVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTG 180

Query: 181 KCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLLK 240
           KCGSVTVRMVPAPRG+GIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCL K
Sbjct: 181 KCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLQK 240

Query: 241 TYGFLTPEFWKETRFTKSPFQEHTDLLAKPTVKA 262
           TYGFLTPEFWKETRF++SP+QEHTD L+   V A
Sbjct: 241 TYGFLTPEFWKETRFSRSPYQEHTDFLSTKAVSA 273

[Close]

BLAST of Carg12743 vs. ExPASy Swiss-Prot
Match: P25444 (40S ribosomal protein S2 OS=Mus musculus OX=10090 GN=Rps2 PE=1 SV=3)

HSP 1 Score: 371.7 bits (953), Expect = 7.1e-102
Identity = 189/253 (74.70%), Postives = 216/253 (85.38%), Query Frame = 0


Query: 6   GGDRGGFGRGFGGRGRGGDRGRGRRRAGR--RDEEEKWVPVTKLGRLVKEGKIQSLEQIY 65
           GG RGGFG G  GRGRG  RGRGR R  R  + E+++W+PVTKLGRLVK+ KI+SLE+IY
Sbjct: 23  GGFRGGFGSGLRGRGRGRGRGRGRGRGARGGKAEDKEWIPVTKLGRLVKDMKIKSLEEIY 82

Query: 66  LHSLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVK 125
           L SLPIKE +I+D  +G SLKDEV+KIMPVQKQTRAGQRTRFKAFV +GD NGHVGLGVK
Sbjct: 83  LFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVK 142

Query: 126 CSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGA 185
           CSKEVATAIRG+IILAKLS++PVRRGYWGNKIGKPHTVPCKVTG+CGSV VR++PAPRG 
Sbjct: 143 CSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGT 202

Query: 186 GIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPEFWKETRFT 245
           GIV+A VPKK+L  AGIDD +TS+RG T TLGNF KATFD + KTY +LTP+ WKET FT
Sbjct: 203 GIVSAPVPKKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWKETVFT 262

Query: 246 KSPFQEHTDLLAK 257
           KSP+QE TD L K
Sbjct: 263 KSPYQEFTDHLVK 275

[Close]

BLAST of Carg12743 vs. ExPASy TrEMBL
Match: A0A6J1EBD7 (40S ribosomal protein S2-4-like OS=Cucurbita moschata OX=3662 GN=LOC111432496 PE=3 SV=1)

HSP 1 Score: 531.6 bits (1368), Expect = 2.0e-147
Identity = 272/272 (100.00%), Postives = 272/272 (100.00%), Query Frame = 0


Query: 1   MAERGGGDRGGFGRGFGGRGRGGDRGRGRRRAGRRDEEEKWVPVTKLGRLVKEGKIQSLE 60
           MAERGGGDRGGFGRGFGGRGRGGDRGRGRRRAGRRDEEEKWVPVTKLGRLVKEGKIQSLE
Sbjct: 1   MAERGGGDRGGFGRGFGGRGRGGDRGRGRRRAGRRDEEEKWVPVTKLGRLVKEGKIQSLE 60

Query: 61  QIYLHSLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGL 120
           QIYLHSLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGL
Sbjct: 61  QIYLHSLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGL 120

Query: 121 GVKCSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAP 180
           GVKCSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAP
Sbjct: 121 GVKCSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAP 180

Query: 181 RGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPEFWKET 240
           RGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPEFWKET
Sbjct: 181 RGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPEFWKET 240

Query: 241 RFTKSPFQEHTDLLAKPTVKALLLDDAERVNA 273
           RFTKSPFQEHTDLLAKPTVKALLLDDAERVNA
Sbjct: 241 RFTKSPFQEHTDLLAKPTVKALLLDDAERVNA 272

[Close]

BLAST of Carg12743 vs. ExPASy TrEMBL
Match: A0A6J1HRL3 (40S ribosomal protein S2-4-like OS=Cucurbita maxima OX=3661 GN=LOC111466080 PE=3 SV=1)

HSP 1 Score: 530.4 bits (1365), Expect = 4.4e-147
Identity = 271/271 (100.00%), Postives = 271/271 (100.00%), Query Frame = 0


Query: 1   MAERGGGDRGGFGRGFGGRGRGGDRGRGRRRAGRRDEEEKWVPVTKLGRLVKEGKIQSLE 60
           MAERGGGDRGGFGRGFGGRGRGGDRGRGRRRAGRRDEEEKWVPVTKLGRLVKEGKIQSLE
Sbjct: 1   MAERGGGDRGGFGRGFGGRGRGGDRGRGRRRAGRRDEEEKWVPVTKLGRLVKEGKIQSLE 60

Query: 61  QIYLHSLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGL 120
           QIYLHSLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGL
Sbjct: 61  QIYLHSLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGL 120

Query: 121 GVKCSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAP 180
           GVKCSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAP
Sbjct: 121 GVKCSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAP 180

Query: 181 RGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPEFWKET 240
           RGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPEFWKET
Sbjct: 181 RGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPEFWKET 240

Query: 241 RFTKSPFQEHTDLLAKPTVKALLLDDAERVN 272
           RFTKSPFQEHTDLLAKPTVKALLLDDAERVN
Sbjct: 241 RFTKSPFQEHTDLLAKPTVKALLLDDAERVN 271

[Close]

BLAST of Carg12743 vs. ExPASy TrEMBL
Match: A0A6J1HTA3 (40S ribosomal protein S2-4-like OS=Cucurbita maxima OX=3661 GN=LOC111467257 PE=3 SV=1)

HSP 1 Score: 526.2 bits (1354), Expect = 8.3e-146
Identity = 271/272 (99.63%), Postives = 271/272 (99.63%), Query Frame = 0


Query: 1   MAERGGGDRGGFGRGFGGRGRGGDRGRGRRRAGRRDEEEKWVPVTKLGRLVKEGKIQSLE 60
           MAER GGDRGGFGRGFGGRGRGGDRGRGRRRAGRRDEEEKWVPVTKLGRLVKEGKIQSLE
Sbjct: 1   MAER-GGDRGGFGRGFGGRGRGGDRGRGRRRAGRRDEEEKWVPVTKLGRLVKEGKIQSLE 60

Query: 61  QIYLHSLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGL 120
           QIYLHSLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGL
Sbjct: 61  QIYLHSLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGL 120

Query: 121 GVKCSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAP 180
           GVKCSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAP
Sbjct: 121 GVKCSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAP 180

Query: 181 RGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPEFWKET 240
           RGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPEFWKET
Sbjct: 181 RGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPEFWKET 240

Query: 241 RFTKSPFQEHTDLLAKPTVKALLLDDAERVNA 273
           RFTKSPFQEHTDLLAKPTVKALLLDDAERVNA
Sbjct: 241 RFTKSPFQEHTDLLAKPTVKALLLDDAERVNA 271

[Close]

BLAST of Carg12743 vs. ExPASy TrEMBL
Match: A0A6J1EPL6 (40S ribosomal protein S2-4-like OS=Cucurbita moschata OX=3662 GN=LOC111435482 PE=3 SV=1)

HSP 1 Score: 526.2 bits (1354), Expect = 8.3e-146
Identity = 271/272 (99.63%), Postives = 271/272 (99.63%), Query Frame = 0


Query: 1   MAERGGGDRGGFGRGFGGRGRGGDRGRGRRRAGRRDEEEKWVPVTKLGRLVKEGKIQSLE 60
           MAER GGDRGGFGRGFGGRGRGGDRGRGRRRAGRRDEEEKWVPVTKLGRLVKEGKIQSLE
Sbjct: 1   MAER-GGDRGGFGRGFGGRGRGGDRGRGRRRAGRRDEEEKWVPVTKLGRLVKEGKIQSLE 60

Query: 61  QIYLHSLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGL 120
           QIYLHSLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGL
Sbjct: 61  QIYLHSLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGL 120

Query: 121 GVKCSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAP 180
           GVKCSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAP
Sbjct: 121 GVKCSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAP 180

Query: 181 RGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPEFWKET 240
           RGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPEFWKET
Sbjct: 181 RGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPEFWKET 240

Query: 241 RFTKSPFQEHTDLLAKPTVKALLLDDAERVNA 273
           RFTKSPFQEHTDLLAKPTVKALLLDDAERVNA
Sbjct: 241 RFTKSPFQEHTDLLAKPTVKALLLDDAERVNA 271

[Close]

BLAST of Carg12743 vs. ExPASy TrEMBL
Match: A0A5A7ULX0 (40S ribosomal protein S2-4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold513G00150 PE=3 SV=1)

HSP 1 Score: 518.8 bits (1335), Expect = 1.3e-143
Identity = 267/272 (98.16%), Postives = 270/272 (99.26%), Query Frame = 0


Query: 1   MAERGGGDRGGFGRGFGGRGRGGDRGRGRRRAGRRDEEEKWVPVTKLGRLVKEGKIQSLE 60
           MAER GGDRGGFGRGFGGRGRGGDRGRGRRRAGRRDEEEKWVPVTKLGRLVKEGKIQSLE
Sbjct: 1   MAER-GGDRGGFGRGFGGRGRGGDRGRGRRRAGRRDEEEKWVPVTKLGRLVKEGKIQSLE 60

Query: 61  QIYLHSLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGL 120
           QIYLHSLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGL
Sbjct: 61  QIYLHSLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGL 120

Query: 121 GVKCSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAP 180
           GVKCSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAP
Sbjct: 121 GVKCSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAP 180

Query: 181 RGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPEFWKET 240
           RGAGIVAARVPKKVLQFAGI+DVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPEFW+ET
Sbjct: 181 RGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPEFWRET 240

Query: 241 RFTKSPFQEHTDLLAKPTVKALLLDDAERVNA 273
           RFTKSPFQEHTDLLAKPTVKALLL+DAERV A
Sbjct: 241 RFTKSPFQEHTDLLAKPTVKALLLEDAERVAA 271

[Close]

BLAST of Carg12743 vs. TAIR 10
Match: AT3G57490.1 (Ribosomal protein S5 family protein )

HSP 1 Score: 450.3 bits (1157), Expect = 1.1e-126
Identity = 235/266 (88.35%), Postives = 247/266 (92.86%), Query Frame = 0


Query: 1   MAERG---GGDRGGFGRGFGGR--GRGGDRGRGRRRAGRRDEEEKWVPVTKLGRLVKEGK 60
           MAERG   GGDRG FGRGFGGR  GRGG RGRG RRAGR  EEEKWVPVTKLGRLVKEGK
Sbjct: 1   MAERGVERGGDRGDFGRGFGGRGGGRGGPRGRG-RRAGRAPEEEKWVPVTKLGRLVKEGK 60

Query: 61  IQSLEQIYLHSLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGN 120
           I  +EQIYLHSLP+KE+QI+D L+GPSLKDEVMKIMPVQKQTRAGQRTRFKAF+VVGD N
Sbjct: 61  ITKIEQIYLHSLPVKEYQIIDLLVGPSLKDEVMKIMPVQKQTRAGQRTRFKAFIVVGDSN 120

Query: 121 GHVGLGVKCSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVR 180
           GHVGLGVKCSKEVATAIRG+IILAKLSV+P+RRGYWGNKIGKPHTVPCKVTGKCGSVTVR
Sbjct: 121 GHVGLGVKCSKEVATAIRGAIILAKLSVVPIRRGYWGNKIGKPHTVPCKVTGKCGSVTVR 180

Query: 181 MVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPE 240
           MVPAPRG+GIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCL KTYGFLTPE
Sbjct: 181 MVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLQKTYGFLTPE 240

Query: 241 FWKETRFTKSPFQEHTD-LLAKPTVK 261
           FWKETRF+KSP+QEHTD LL  P VK
Sbjct: 241 FWKETRFSKSPYQEHTDFLLIPPGVK 265

[Close]

BLAST of Carg12743 vs. TAIR 10
Match: AT2G41840.1 (Ribosomal protein S5 family protein )

HSP 1 Score: 440.3 bits (1131), Expect = 1.2e-123
Identity = 228/268 (85.07%), Postives = 241/268 (89.93%), Query Frame = 0


Query: 1   MAERG-------GGDRGGFGRGFGGRGRGGDR------GRGRRRAGRRDEEEKWVPVTKL 60
           MAERG       GG+RG FGRGFGGRG  GDR      GRG RR GR  EEEKWVPVTKL
Sbjct: 1   MAERGGERGVERGGERGDFGRGFGGRGGRGDRGGRGRGGRGGRRGGRASEEEKWVPVTKL 60

Query: 61  GRLVKEGKIQSLEQIYLHSLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKA 120
           GRLV  G I+ +EQIYLHSLP+KE+QI+D LIGP+LKDEVMKIMPVQKQTRAGQRTRFKA
Sbjct: 61  GRLVAAGHIKQIEQIYLHSLPVKEYQIIDMLIGPTLKDEVMKIMPVQKQTRAGQRTRFKA 120

Query: 121 FVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTG 180
           FVVVGDGNGHVGLGVKCSKEVATAIRG+IILAKLSV+PVRRGYWGNKIGKPHTVPCKVTG
Sbjct: 121 FVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTG 180

Query: 181 KCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLLK 240
           KCGSVTVRMVPAPRG+GIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCL K
Sbjct: 181 KCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLQK 240

Query: 241 TYGFLTPEFWKETRFTKSPFQEHTDLLA 256
           TYGFLTPEFWKETRF++SP+QEHTD LA
Sbjct: 241 TYGFLTPEFWKETRFSRSPYQEHTDFLA 268

[Close]

BLAST of Carg12743 vs. TAIR 10
Match: AT1G58983.1 (Ribosomal protein S5 family protein )

HSP 1 Score: 438.0 bits (1125), Expect = 5.7e-123
Identity = 229/274 (83.58%), Postives = 242/274 (88.32%), Query Frame = 0


Query: 1   MAERG-------GGDRGGFGRGFGGRGRGGDRGRGR------RRAGRRDEEEKWVPVTKL 60
           MAERG       GGDRG FGRGFGG GRGG RGR R      RR GR  EE KWVPVTKL
Sbjct: 1   MAERGGESGAERGGDRGDFGRGFGG-GRGGGRGRDRGPRGRGRRGGRASEETKWVPVTKL 60

Query: 61  GRLVKEGKIQSLEQIYLHSLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKA 120
           GRLV + KI  LEQIYLHSLP+KE+QI+D L+GP+LKDEVMKIMPVQKQTRAGQRTRFKA
Sbjct: 61  GRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKA 120

Query: 121 FVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTG 180
           FVVVGDGNGHVGLGVKCSKEVATAIRG+IILAKLSV+PVRRGYWGNKIGKPHTVPCKVTG
Sbjct: 121 FVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTG 180

Query: 181 KCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLLK 240
           KCGSVTVRMVPAPRG+GIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCL K
Sbjct: 181 KCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLQK 240

Query: 241 TYGFLTPEFWKETRFTKSPFQEHTDLLAKPTVKA 262
           TYGFLTPEFWKETRF++SP+QEHTD L+   V A
Sbjct: 241 TYGFLTPEFWKETRFSRSPYQEHTDFLSTKAVSA 273

[Close]

BLAST of Carg12743 vs. TAIR 10
Match: AT1G59359.1 (Ribosomal protein S5 family protein )

HSP 1 Score: 438.0 bits (1125), Expect = 5.7e-123
Identity = 229/274 (83.58%), Postives = 242/274 (88.32%), Query Frame = 0


Query: 1   MAERG-------GGDRGGFGRGFGGRGRGGDRGRGR------RRAGRRDEEEKWVPVTKL 60
           MAERG       GGDRG FGRGFGG GRGG RGR R      RR GR  EE KWVPVTKL
Sbjct: 1   MAERGGESGAERGGDRGDFGRGFGG-GRGGGRGRDRGPRGRGRRGGRASEETKWVPVTKL 60

Query: 61  GRLVKEGKIQSLEQIYLHSLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKA 120
           GRLV + KI  LEQIYLHSLP+KE+QI+D L+GP+LKDEVMKIMPVQKQTRAGQRTRFKA
Sbjct: 61  GRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKA 120

Query: 121 FVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTG 180
           FVVVGDGNGHVGLGVKCSKEVATAIRG+IILAKLSV+PVRRGYWGNKIGKPHTVPCKVTG
Sbjct: 121 FVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTG 180

Query: 181 KCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLLK 240
           KCGSVTVRMVPAPRG+GIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCL K
Sbjct: 181 KCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLQK 240

Query: 241 TYGFLTPEFWKETRFTKSPFQEHTDLLAKPTVKA 262
           TYGFLTPEFWKETRF++SP+QEHTD L+   V A
Sbjct: 241 TYGFLTPEFWKETRFSRSPYQEHTDFLSTKAVSA 273

[Close]

BLAST of Carg12743 vs. TAIR 10
Match: AT1G58380.1 (Ribosomal protein S5 family protein )

HSP 1 Score: 438.0 bits (1125), Expect = 5.7e-123
Identity = 229/274 (83.58%), Postives = 242/274 (88.32%), Query Frame = 0


Query: 1   MAERG-------GGDRGGFGRGFGGRGRGGDRGRGR------RRAGRRDEEEKWVPVTKL 60
           MAERG       GGDRG FGRGFGG GRGG RGR R      RR GR  EE KWVPVTKL
Sbjct: 1   MAERGGEGGAERGGDRGDFGRGFGG-GRGGGRGRDRGPRGRGRRGGRASEETKWVPVTKL 60

Query: 61  GRLVKEGKIQSLEQIYLHSLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKA 120
           GRLV + KI  LEQIYLHSLP+KE+QI+D L+GP+LKDEVMKIMPVQKQTRAGQRTRFKA
Sbjct: 61  GRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKA 120

Query: 121 FVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTG 180
           FVVVGDGNGHVGLGVKCSKEVATAIRG+IILAKLSV+PVRRGYWGNKIGKPHTVPCKVTG
Sbjct: 121 FVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTG 180

Query: 181 KCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLLK 240
           KCGSVTVRMVPAPRG+GIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCL K
Sbjct: 181 KCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLQK 240

Query: 241 TYGFLTPEFWKETRFTKSPFQEHTDLLAKPTVKA 262
           TYGFLTPEFWKETRF++SP+QEHTD L+   V A
Sbjct: 241 TYGFLTPEFWKETRFSRSPYQEHTDFLSTKAVSA 273

The following BLAST results are available for this feature:

BLAST of Carg12743 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022925174.1	4.1e-147	100.00	40S ribosomal protein S2-4-like [Cucurbita moschata] >KAG6595664.1 40S ribosomal...	[more]
XP_022966425.1	9.1e-147	100.00	40S ribosomal protein S2-4-like [Cucurbita maxima]	[more]
XP_022928633.1	1.7e-145	99.63	40S ribosomal protein S2-4-like [Cucurbita moschata] >XP_022967881.1 40S ribosom...	[more]
XP_008460763.1	2.7e-143	98.16	PREDICTED: 40S ribosomal protein S2-4-like [Cucumis melo] >KAA0056140.1 40S ribo...	[more]
XP_038882736.1	4.7e-143	97.79	40S ribosomal protein S2-4-like [Benincasa hispida]	[more]

BLAST of Carg12743 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SCM3	1.6e-125	88.35	40S ribosomal protein S2-4 OS=Arabidopsis thaliana OX=3702 GN=RPS2D PE=2 SV=1	[more]
P49688	1.6e-122	85.07	40S ribosomal protein S2-3 OS=Arabidopsis thaliana OX=3702 GN=RPS2C PE=1 SV=2	[more]
Q8L8Y0	8.0e-122	83.58	40S ribosomal protein S2-1 OS=Arabidopsis thaliana OX=3702 GN=RPS2A PE=2 SV=2	[more]
Q93VB8	8.0e-122	83.58	40S ribosomal protein S2-2 OS=Arabidopsis thaliana OX=3702 GN=RPS2B PE=2 SV=1	[more]
P25444	7.1e-102	74.70	40S ribosomal protein S2 OS=Mus musculus OX=10090 GN=Rps2 PE=1 SV=3	[more]

BLAST of Carg12743 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EBD7	2.0e-147	100.00	40S ribosomal protein S2-4-like OS=Cucurbita moschata OX=3662 GN=LOC111432496 PE...	[more]
A0A6J1HRL3	4.4e-147	100.00	40S ribosomal protein S2-4-like OS=Cucurbita maxima OX=3661 GN=LOC111466080 PE=3...	[more]
A0A6J1HTA3	8.3e-146	99.63	40S ribosomal protein S2-4-like OS=Cucurbita maxima OX=3661 GN=LOC111467257 PE=3...	[more]
A0A6J1EPL6	8.3e-146	99.63	40S ribosomal protein S2-4-like OS=Cucurbita moschata OX=3662 GN=LOC111435482 PE...	[more]
A0A5A7ULX0	1.3e-143	98.16	40S ribosomal protein S2-4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]

BLAST of Carg12743 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G57490.1	1.1e-126	88.35	Ribosomal protein S5 family protein	[more]
AT2G41840.1	1.2e-123	85.07	Ribosomal protein S5 family protein	[more]
AT1G58983.1	5.7e-123	83.58	Ribosomal protein S5 family protein	[more]
AT1G59359.1	5.7e-123	83.58	Ribosomal protein S5 family protein	[more]
AT1G58380.1	5.7e-123	83.58	Ribosomal protein S5 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005711	Ribosomal protein S5, eukaryotic/archaeal	TIGRFAM	TIGR01020	TIGR01020	coord: 36..243 e-value: 3.7E-94 score: 312.1
IPR014721	Ribosomal protein S5 domain 2-type fold, subgroup	GENE3D	3.30.230.10		coord: 146..239 e-value: 4.9E-51 score: 172.8
IPR005324	Ribosomal protein S5, C-terminal	PFAM	PF03719	Ribosomal_S5_C	coord: 166..232 e-value: 9.3E-24 score: 82.7
None	No IPR available	GENE3D	3.30.160.20		coord: 40..145 e-value: 1.0E-55 score: 188.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..38
None	No IPR available	PANTHER	PTHR13718:SF101	40S RIBOSOMAL PROTEIN S2-1-RELATED	coord: 1..269
None	No IPR available	SUPERFAMILY	54768	dsRNA-binding domain-like	coord: 79..148
IPR013810	Ribosomal protein S5, N-terminal	PFAM	PF00333	Ribosomal_S5	coord: 83..147 e-value: 7.0E-30 score: 102.8
IPR013810	Ribosomal protein S5, N-terminal	PROSITE	PS50881	S5_DSRBD	coord: 83..146 score: 22.755819
IPR000851	Ribosomal protein S5	PANTHER	PTHR13718	RIBOSOMAL S SUBUNIT	coord: 1..269
IPR018192	Ribosomal protein S5, N-terminal, conserved site	PROSITE	PS00585	RIBOSOMAL_S5	coord: 100..132
IPR020568	Ribosomal protein S5 domain 2-type fold	SUPERFAMILY	54211	Ribosomal protein S5 domain 2-like	coord: 159..239

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg12743-RA	Carg12743-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005840	ribosome
cellular_component	GO:0015935	small ribosomal subunit
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003723	RNA binding