Carg12738 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg12738
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	ras-related protein RABA4d
Location	Carg_Chr07: 7840966 .. 7845520 (-)
RNA-Seq Expression	Carg12738
Synteny	Carg12738

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATTAGAATGTCGAATCTATATGGGGATTATAATCAGAAGATTGATTATGTTTTCAAAGTTGTTTTGATCGGAGATTCGGCCGTCGGCAAAACCCAACTCCTTTCGCGATTTTCAAGGAATGAATTTAGCGTTGATTCCAAAGCTACTATTGGAGTCGAGTTTCAGACTAAAACTCTCGTTATTGATCAGAAAACAGTGAAAGCCCAGATATGGGATACTGCTGGACAGGAAAGGTATGTTGGTTTAATTCTTCTTGTTTTGTTTCTCGTCGAGTACTTCATTGTGTTCATGCTTTTGGATCTGTGATAGCTTTTAGAGATGAATATTGGAATGTGCTCTTCAACTTTGTTCTAACTTATAGCTTGAGTAGATGAATGATTGTATGATACCAACATAGAATTTGTAACAGGCTAAGCCCACCGCTAGGAGAACGAAGCATTCCTTATAAGGGTGTGGAAACCTCTCCCTAGTAGACGCTTCTCCCTAGTAGACGCTTTTTAAAGCCTTGAGGAAAAGCTTAGAAGGAAAGGCCCAAAGAGGACAATATTTGCTAGCGGTGGGCTTGAGGTGTTACAAATGGTATTAGAGCCAGACACTGGGCGGTTTGCTAACGAGGACGCTGGGCCCCAAGGGGGGTGGATTGTTAGACCCTACATCGATTGTTGAGAGAAACGAAGTATTACTTATAAGAGTGTGGAAACCTCTCCCTAGCAGACAGATGCAGTTTAAAACCTCGAGGGGAAGCCCAAAGAGGAATATCTATTAGCGGTGGGCTTGGGGATTCCACACCCTTATGAAGAATGTTTTGTTCTCCTCTCCAACCAATGTGGGATCTTACAATAAGGATAGTTTCTAGATGAGTACCCATTTCATTGCACAGCTCTGAAAGATGCGTTTTAAAACCTTGAGGGGAAACCTAAAGAGGACAATATTTGTTAGCGTGAGTTTGGGCTGTTACAAATCTTAGGATAGTTTCTAGATGAGTACCCATTTCATTGCACAGCTCTGAAAGATGCGTTTTAAAACCTTGAGGGGAAACCTAAAGAGGATAATATTTGCTAGCGTGAGTTTGGGCTGTTACAAATGGTATCAGAGCCAGACACCGAGCAGTATGCCAGCGAGGACGCTGGGCCCCTAAGGGGGTGGATTGTGAGACCCCACGTCAGTTGGAGAGGGGAACGATGTTTGGAATCACAGATCTCCACAATGGTATGATATCGTCCACTTTGAGCATAAGCTCTCATGGCTTTGATTTGGGCTTTCCTAAAAGGCCTCATACGAATGGAGATAGTATTCTTTGCTTATAAACCCATAATCATTCCCTAAATTAGCCAATGTGGGACTCACACCCAACAATCCTCAACAATCCTCTCCTCGAACAAAGTACACTATAAGCCTCCCTTTAATCGAGGCTCGACTCCTTTTTCTGGAGCCCTCGAACAAAGTACCCTCTTTGTTCGACACTTTAGTTACTTTTGACTACACCTTCGAGGCTCACAATTCGTTGTTCGATATTTGAGGATTCTATTGTCATGACTAAGTTTAGGGCATGGCTCTGATACCATACGGATCTCCACAATGGTATGATATTGTCCACTTTGAGCATAAGCTCTCATGGCTTTGCTTTGGGCTTCCCCAAAAGGCCTCATACCAATGGAGATAGTATTCCTTGCTTATAAACTCATGATCATTCACTAAATTAGCCAAGGTAGGACTCACACCCAACAATTCTTAACAAACGAAGCATTCCTTGTAAGGGTGTGGAAACCCCTCACTAGTAGACGCGTTTTAAAGCCTTGAAGAGAAACTCGAAAGGGAAAGCCAAAAGTGGACAATTTCTGCTACCAGTGGCTTGGGCTTTTATAGAATTAGAGAGCAAAGAGTTTGGAACCCTTGAATAGGATTGAAACTTGTTTTGTTGTTGTTTTCTCTGTACTCTCAAATCTAGAGAGATTGCAGAGATCCATTTATGTTTGAATGAGCTTGTGGTGATATCAGCTTTTGTGTATTAGCATGGTCTACTTTCTATTATTTTTTCCTGTGTTTCTTATATATAGCTGCAGCGCATTCTTGTCCTGTTTCAGATTTATTGAAATTGTTGTGATAAGATCGATAAGTCATAGGTTTGTTTTATGTATGCTTGGAAAAGACATAATGAAAGAATGAGTTGTTGGAAGAAAAATGAGAAGGGTTTGATCTATGTGGGACTCGAGTATGAGGCCCGATTTTCATGATTCTCTTATTGTAGGATCGGAATGCAAACACAAGAGGACTCGGTTCTGCATAAATTTGAGAGGAAGGTAGGGGAAAAGGTGAGTGAAGTCGGGGGGGAGTCGGGAGACCTTTCTCGAGTTTGTTAACTTTTGTTCTTTTGCTAAGAGGATTGATACAAAAGTGTATTTCAAGTCAGGGAAGTTCTATCAAATTGCTATTAGAGAATTTTCTTAGGCATGCCTTGGAGTCACTTGAGTTGCACTTAGGATTAGTTGTGCGGAAGCTTGATGTAAGAGCCTAAGTCCACCGCTAGCAGATACTGTTCTCTTTGGGCTTTCCCTTTCAGGCTTCCCCTCAAGGTTTCTAAAACGCGTTTGCTAGGGAGAGATTTCCATACCCTTATAAAGAATGCTTTGTTCCCCTCTCCAATCGATATGGGTTCTTTCAATCCACCCCCCTTCGGGGTTCGTCCAACATCCTCGCTAGCACACCGCCTGGTGTCCACCCCACTTTAGAGTTCAGCCTCCTCGCTAGCCCATCACCTGATGTCTGGCTCTAATATAATTTGTAACAGCTCAAGCCTACTGCTAGCAGATATTGTCCTCTTTGGGCCTTTCCCTCAAGATTTTTGAAACGCATTTGCTAGGGAGAGATTTCCATACCCTTGTAAAGAATGTTTCGTTCTTCTTTTCAATCGATGTGGGATCTCATAACCCATCCCCCCCTAGGCCCAACATCTTCGCTGGCACTCGTTCCCCTCTCCAATCGATGTGGGACCCCCCAGTCCACCCCATTCAGGGCTTAGCGTCCTGGCTGACACACTGCTTGGTGTCGATCCCCCTTTAGAATTCAGCCTCATCGCTGGCACATCATCCGATGTCTGACTTTGTAACCGCCCAAGCCCACTGCAAGCAAATATTGTCCCCTTTGGGCTTTTCTTTTCGAGTTTCTCCTCAAGGTTTTTAAAACGCGTCTGCTAGGGAGAGGTTTCCACACCCTTATAAAGAATGGTTCGTTCTCCTCTCCAATCGATGTGGGATCTCTCACCTGAAGTGCCAAGTAACGGAAAGGACATCATCATTTGGATTAACCAATGAATAAGTTAGCTGAAGCAAAAGGGAGGAGGAATGAATTGTGACGAGGGACAAGACAATTGAATTAAGGAGTGGGAGAGGCCAGTGAGATAATGAGGAGGAAGTCAGGCATAAATGAACAAACCGCAAGAAGGCTAGAGCTGCCTCAATTGAATGGAGTCAATCCGGATGGATGGACGAGTCGTCAATCTCTTTGCACTTGGTGAAGTTCAAGCTGGTGACGATAGCTCGATTTCTTACGACATCACATGAAGCAACGCCATATGAGCTTTTTTTAGCTCTACAACAGGAGAGGAATCCGTACTAACTCAATGGATTGGCAGAGCAATGGTGGACGCCCTATCAAAAAGGTGGAAGTTTGGATGGGGTCTTGATGAATAAACGAGCCATGAGTTCGGTTTACGTATTCGAGGAAGAAAACGAGAGAATTGGGTTAACTTGAATGCTAACCAGAATGGTGTGAGTCATGCAGGACTCAAATTAGTTAGGAGTAGTGAGGTGCATCGTTTATAATTCCGATATCATCAGACGTGAGAGATGTCGAAGGAGAACGTTATGGAATAGTTGAGGAGAGTTCGATACGTATATCTGACGAAATAAGATTCCGAAAATTGATGTTATGAACTTAAATTGTGTAGATTACGATGAAGTTGTTGATAGTTTCTTATGATATCTTTGTTATCTCCATTGTCAGATACCGAGCAGTGACAAGTGCATACTACAGAGGTGCAGTAGGAGCCATGCTAGTTTACGATATGACGAAGCGTCAATCGTTCGACCACATGGCGCGGTGGCTGGAGGAGCTAAGAGGACATGCTGATAAGAACATCGTCATAATGCTGATCGGAAACAAATGCGACTTAGGAAGCCTCCGAGCAGTGCCAACAGAAGATGCACAGGAATTTGCTGAAAGAGAGAACCTGTTCTTCATGGAGACGTCGGCTCTGGAGTCGACGAACGTCGAAACTGCGTTCTTCAGAATTCTAACAGAGATTTATAGGATAATCAGCAAGAAGAGTCTTGCAGCTGGGGAATCGATAGATATTGGCGTGAATCCAGCGCTGTTTAAAGGGACAAACATAGTTGTTCCTGGACAGGACCAGGCTGGTGGGAGAAAAGGGTGCTGCTTTGCCTCATGAGTTTCCATATAATTCCATCATCATTTCAGTTGGGACATTGTTTTTCTATTCCACTTTTGATTTATACTAAGAAAAAAAGATTCATGTATTTGTATTTTGTAGAGGAA

mRNA sequence

AATTAGAATGTCGAATCTATATGGGGATTATAATCAGAAGATTGATTATGTTTTCAAAGTTGTTTTGATCGGAGATTCGGCCGTCGGCAAAACCCAACTCCTTTCGCGATTTTCAAGGAATGAATTTAGCGTTGATTCCAAAGCTACTATTGGAGTCGAGTTTCAGACTAAAACTCTCGTTATTGATCAGAAAACAGTGAAAGCCCAGATATGGGATACTGCTGGACAGGAAAGATACCGAGCAGTGACAAGTGCATACTACAGAGGTGCAGTAGGAGCCATGCTAGTTTACGATATGACGAAGCGTCAATCGTTCGACCACATGGCGCGGTGGCTGGAGGAGCTAAGAGGACATGCTGATAAGAACATCGTCATAATGCTGATCGGAAACAAATGCGACTTAGGAAGCCTCCGAGCAGTGCCAACAGAAGATGCACAGGAATTTGCTGAAAGAGAGAACCTGTTCTTCATGGAGACGTCGGCTCTGGAGTCGACGAACGTCGAAACTGCGTTCTTCAGAATTCTAACAGAGATTTATAGGATAATCAGCAAGAAGAGTCTTGCAGCTGGGGAATCGATAGATATTGGCGTGAATCCAGCGCTGTTTAAAGGGACAAACATAGTTGTTCCTGGACAGGACCAGGCTGGTGGGAGAAAAGGGTGCTGCTTTGCCTCATGAGTTTCCATATAATTCCATCATCATTTCAGTTGGGACATTGTTTTTCTATTCCACTTTTGATTTATACTAAGAAAAAAAGATTCATGTATTTGTATTTTGTAGAGGAA

Coding sequence (CDS)

ATGTCGAATCTATATGGGGATTATAATCAGAAGATTGATTATGTTTTCAAAGTTGTTTTGATCGGAGATTCGGCCGTCGGCAAAACCCAACTCCTTTCGCGATTTTCAAGGAATGAATTTAGCGTTGATTCCAAAGCTACTATTGGAGTCGAGTTTCAGACTAAAACTCTCGTTATTGATCAGAAAACAGTGAAAGCCCAGATATGGGATACTGCTGGACAGGAAAGATACCGAGCAGTGACAAGTGCATACTACAGAGGTGCAGTAGGAGCCATGCTAGTTTACGATATGACGAAGCGTCAATCGTTCGACCACATGGCGCGGTGGCTGGAGGAGCTAAGAGGACATGCTGATAAGAACATCGTCATAATGCTGATCGGAAACAAATGCGACTTAGGAAGCCTCCGAGCAGTGCCAACAGAAGATGCACAGGAATTTGCTGAAAGAGAGAACCTGTTCTTCATGGAGACGTCGGCTCTGGAGTCGACGAACGTCGAAACTGCGTTCTTCAGAATTCTAACAGAGATTTATAGGATAATCAGCAAGAAGAGTCTTGCAGCTGGGGAATCGATAGATATTGGCGTGAATCCAGCGCTGTTTAAAGGGACAAACATAGTTGTTCCTGGACAGGACCAGGCTGGTGGGAGAAAAGGGTGCTGCTTTGCCTCATGA

Protein sequence

MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLSRFSRNEFSVDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFRILTEIYRIISKKSLAAGESIDIGVNPALFKGTNIVVPGQDQAGGRKGCCFAS

Homology

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BLAST of Carg12738 vs. NCBI nr
Match: XP_022925137.1 (ras-related protein RABA4d [Cucurbita moschata] >XP_023518611.1 ras-related protein RABA4d [Cucurbita pepo subsp. pepo] >KAG7027618.1 Ras-related protein RABA4d [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 442.6 bits (1137), Expect = 2.0e-120
Identity = 223/223 (100.00%), Postives = 223/223 (100.00%), Query Frame = 0


Query: 1   MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLSRFSRNEFSVDSKATIGVEFQTKTLVID 60
           MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLSRFSRNEFSVDSKATIGVEFQTKTLVID
Sbjct: 1   MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLSRFSRNEFSVDSKATIGVEFQTKTLVID 60

Query: 61  QKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKN 120
           QKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKN
Sbjct: 61  QKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKN 120

Query: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFRILTEIYRII 180
           IVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFRILTEIYRII
Sbjct: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFRILTEIYRII 180

Query: 181 SKKSLAAGESIDIGVNPALFKGTNIVVPGQDQAGGRKGCCFAS 224
           SKKSLAAGESIDIGVNPALFKGTNIVVPGQDQAGGRKGCCFAS
Sbjct: 181 SKKSLAAGESIDIGVNPALFKGTNIVVPGQDQAGGRKGCCFAS 223

[Close]

BLAST of Carg12738 vs. NCBI nr
Match: XP_022966454.1 (ras-related protein RABA4d [Cucurbita maxima])

HSP 1 Score: 441.0 bits (1133), Expect = 5.9e-120
Identity = 222/223 (99.55%), Postives = 223/223 (100.00%), Query Frame = 0


Query: 1   MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLSRFSRNEFSVDSKATIGVEFQTKTLVID 60
           MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLSRFSRNEFSVDSKATIGVEFQTKTLVID
Sbjct: 1   MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLSRFSRNEFSVDSKATIGVEFQTKTLVID 60

Query: 61  QKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKN 120
           QKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKN
Sbjct: 61  QKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKN 120

Query: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFRILTEIYRII 180
           IVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFRILTEIYRII
Sbjct: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFRILTEIYRII 180

Query: 181 SKKSLAAGESIDIGVNPALFKGTNIVVPGQDQAGGRKGCCFAS 224
           SKKSLAAGESIDIGVNPALFKGTNIVVPGQ+QAGGRKGCCFAS
Sbjct: 181 SKKSLAAGESIDIGVNPALFKGTNIVVPGQEQAGGRKGCCFAS 223

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BLAST of Carg12738 vs. NCBI nr
Match: XP_038881448.1 (ras-related protein RABA4d [Benincasa hispida])

HSP 1 Score: 429.1 bits (1102), Expect = 2.3e-116
Identity = 216/223 (96.86%), Postives = 217/223 (97.31%), Query Frame = 0


Query: 1   MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLSRFSRNEFSVDSKATIGVEFQTKTLVID 60
           MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLL+RFSRNEFSVDSKATIGVEFQTKTLVID
Sbjct: 1   MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVID 60

Query: 61  QKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKN 120
           QKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKN
Sbjct: 61  QKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKN 120

Query: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFRILTEIYRII 180
           IVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFF ILTEIYRII
Sbjct: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRII 180

Query: 181 SKKSLAAGESIDIGVNPALFKGTNIVVPGQDQAGGRKGCCFAS 224
           SKKSLAAGE IDIG NP LFKGTNIVVPGQDQ  GRKGCCFAS
Sbjct: 181 SKKSLAAGEEIDIGSNPGLFKGTNIVVPGQDQDSGRKGCCFAS 223

[Close]

BLAST of Carg12738 vs. NCBI nr
Match: XP_004150166.1 (ras-related protein RABA4d [Cucumis sativus] >KGN53823.1 hypothetical protein Csa_014745 [Cucumis sativus])

HSP 1 Score: 428.7 bits (1101), Expect = 3.1e-116
Identity = 216/223 (96.86%), Postives = 218/223 (97.76%), Query Frame = 0


Query: 1   MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLSRFSRNEFSVDSKATIGVEFQTKTLVID 60
           MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLL+RFSRNEFSVDSKATIGVEFQTKTLVID
Sbjct: 1   MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVID 60

Query: 61  QKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKN 120
           QKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKN
Sbjct: 61  QKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKN 120

Query: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFRILTEIYRII 180
           IVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFF ILTEIYRII
Sbjct: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRII 180

Query: 181 SKKSLAAGESIDIGVNPALFKGTNIVVPGQDQAGGRKGCCFAS 224
           SKKSLAAGE IDIG NPALFKGT+IVVPGQDQ  GRKGCCFAS
Sbjct: 181 SKKSLAAGEEIDIGSNPALFKGTSIVVPGQDQDSGRKGCCFAS 223

[Close]

BLAST of Carg12738 vs. NCBI nr
Match: XP_008460801.1 (PREDICTED: ras-related protein RABA4d [Cucumis melo] >KAA0053214.1 ras-related protein RABA4d [Cucumis melo var. makuwa])

HSP 1 Score: 428.3 bits (1100), Expect = 4.0e-116
Identity = 216/223 (96.86%), Postives = 217/223 (97.31%), Query Frame = 0


Query: 1   MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLSRFSRNEFSVDSKATIGVEFQTKTLVID 60
           MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLL+RFSRNEFSVDSKATIGVEFQTKTLVID
Sbjct: 1   MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVID 60

Query: 61  QKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKN 120
           QKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKN
Sbjct: 61  QKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKN 120

Query: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFRILTEIYRII 180
           IVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFF ILTEIYRII
Sbjct: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRII 180

Query: 181 SKKSLAAGESIDIGVNPALFKGTNIVVPGQDQAGGRKGCCFAS 224
           SKKSLAAGE IDIG NPALFKGTNIVVPGQDQ  G KGCCFAS
Sbjct: 181 SKKSLAAGEEIDIGSNPALFKGTNIVVPGQDQDSGTKGCCFAS 223

[Close]

BLAST of Carg12738 vs. ExPASy Swiss-Prot
Match: Q9LH50 (Ras-related protein RABA4d OS=Arabidopsis thaliana OX=3702 GN=RABA4D PE=1 SV=1)

HSP 1 Score: 380.6 bits (976), Expect = 1.2e-104
Identity = 191/220 (86.82%), Postives = 203/220 (92.27%), Query Frame = 0


Query: 1   MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLSRFSRNEFSVDSKATIGVEFQTKTLVID 60
           MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLL+RF+RNEFSVDSKATIGVEFQTKTLVID
Sbjct: 1   MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFARNEFSVDSKATIGVEFQTKTLVID 60

Query: 61  QKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKN 120
            KTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMA+WLEELRGHADKN
Sbjct: 61  NKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMAKWLEELRGHADKN 120

Query: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFRILTEIYRII 180
           IVIMLIGNKCDLGSLRAVPTEDAQEFA+RENLFFMETSALE+TNVETAF  ILTEIYRII
Sbjct: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTILTEIYRII 180

Query: 181 SKKSLAAGESIDIGVNPALFKGTNIVVPGQDQAGGRKGCC 221
           SKKSL A +  D   N +L KGT I++P + ++G R GCC
Sbjct: 181 SKKSLTADDD-DADGNSSLLKGTRIIIPSEQESGKRGGCC 219

[Close]

BLAST of Carg12738 vs. ExPASy Swiss-Prot
Match: P25766 (Ras-related protein RGP1 OS=Oryza sativa subsp. japonica OX=39947 GN=RGP1 PE=2 SV=2)

HSP 1 Score: 349.4 bits (895), Expect = 3.1e-95
Identity = 175/219 (79.91%), Postives = 193/219 (88.13%), Query Frame = 0


Query: 5   YGDYNQKIDYVFKVVLIGDSAVGKTQLLSRFSRNEFSVDSKATIGVEFQTKTLVIDQKTV 64
           YG+  QKIDYVFKVVLIGDSAVGK+QLL+RF+RNEF++DSKATIGVEFQT+TL ID +TV
Sbjct: 8   YGEVGQKIDYVFKVVLIGDSAVGKSQLLARFARNEFNLDSKATIGVEFQTRTLHIDARTV 67

Query: 65  KAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKNIVIM 124
           KAQIWDTAGQERYRAVTSAYYRGAVGAMLVYD+TKRQSFDH+ARWLEELRGHADKNIVIM
Sbjct: 68  KAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDHVARWLEELRGHADKNIVIM 127

Query: 125 LIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFRILTEIYRIISKKS 184
           LIGNK DLG+LR VPTEDA+EFAERENLFFMETSALESTNVE AF  +LTEIYRI+SKK+
Sbjct: 128 LIGNKSDLGTLRVVPTEDAKEFAERENLFFMETSALESTNVENAFMTVLTEIYRIVSKKN 187

Query: 185 LAAGESIDIGVNPALFKGTNIVVPGQDQAGGRKGCCFAS 224
           L A E +D   N +L KGT IVVPGQ+ A   K  C  S
Sbjct: 188 LVANEEVDSSGNSSLLKGTKIVVPGQEPAPPTKASCCMS 226

[Close]

BLAST of Carg12738 vs. ExPASy Swiss-Prot
Match: Q9FE79 (Ras-related protein RABA4c OS=Arabidopsis thaliana OX=3702 GN=RABA4C PE=2 SV=1)

HSP 1 Score: 345.5 bits (885), Expect = 4.5e-94
Identity = 171/223 (76.68%), Postives = 196/223 (87.89%), Query Frame = 0


Query: 1   MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLSRFSRNEFSVDSKATIGVEFQTKTLVID 60
           MS    ++NQKIDYVFKVVLIGDSAVGK+QLL+RFSRNEFS++SKATIGVEFQT+TL ID
Sbjct: 1   MSKFQSNFNQKIDYVFKVVLIGDSAVGKSQLLARFSRNEFSIESKATIGVEFQTRTLEID 60

Query: 61  QKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKN 120
           +KT+KAQIWDTAGQERYRAVTSAYYRGAVGAMLVYD+TKRQSFDH+ARWLEELRGHADKN
Sbjct: 61  RKTIKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDHVARWLEELRGHADKN 120

Query: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFRILTEIYRII 180
           IVIMLIGNK DLG+LRAVPTEDA+EFA+RENLFFMETSAL+S NVE +F  +LTEIYRI+
Sbjct: 121 IVIMLIGNKTDLGTLRAVPTEDAKEFAQRENLFFMETSALDSNNVEPSFLTVLTEIYRIV 180

Query: 181 SKKSLAAGESIDIGVNPALFKGTNIVVPGQDQAGGRKGCCFAS 224
           SKK+L A E  + G + +L +GT IVV G++     KGCC  S
Sbjct: 181 SKKNLVANEEGESGGDSSLLQGTKIVVAGEETESKGKGCCGTS 223

[Close]

BLAST of Carg12738 vs. ExPASy Swiss-Prot
Match: Q40191 (Ras-related protein Rab11A OS=Lotus japonicus OX=34305 GN=RAB11A PE=2 SV=1)

HSP 1 Score: 323.9 bits (829), Expect = 1.4e-87
Identity = 166/221 (75.11%), Postives = 189/221 (85.52%), Query Frame = 0


Query: 5   YGDYNQKIDYVFKVVLIGDSAVGKTQLLSRFSRNEFSVDSKATIGVEFQTKTLVIDQKTV 64
           YGD N KIDYVFKVVLIGDSAVGK+Q+L+RF+RNEFS+DSK+TIGVEFQT+TLVID KTV
Sbjct: 7   YGDANAKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKSTIGVEFQTRTLVIDHKTV 66

Query: 65  KAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKNIVIM 124
           KAQIWDTAGQERYRAVTSAYYRGAVGAMLVYD+TKRQ+FDH+ RWLEELR HADKNIVI+
Sbjct: 67  KAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRNHADKNIVII 126

Query: 125 LIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFRILTEIYRIISKKS 184
           LIGNKCDL + R VPTEDA+EFAE+E LFF+ETSALE+TNVE+AF  +LTEIY I++KKS
Sbjct: 127 LIGNKCDLVNQRDVPTEDAKEFAEKEGLFFLETSALEATNVESAFTTVLTEIYNIVNKKS 186

Query: 185 LAAGESIDIGVNPALFKGTNIVVPG--QDQAGGRKGCCFAS 224
           LAA ES   G N A   G  I++PG  Q+    R  CC AS
Sbjct: 187 LAADESQGNG-NSASLSGQKIIIPGPAQEIPAKRNMCCQAS 226

[Close]

BLAST of Carg12738 vs. ExPASy Swiss-Prot
Match: Q40520 (Ras-related protein Rab11C OS=Nicotiana tabacum OX=4097 GN=RAB11C PE=2 SV=1)

HSP 1 Score: 315.8 bits (808), Expect = 3.8e-85
Identity = 159/221 (71.95%), Postives = 187/221 (84.62%), Query Frame = 0


Query: 1   MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLSRFSRNEFSVDSKATIGVEFQTKTLVID 60
           M++ YGD +QKIDYVFKVVLIGDSAVGKTQ+L+RF+RNEFS+DSKATIGVEFQT+TLVI 
Sbjct: 1   MASGYGDASQKIDYVFKVVLIGDSAVGKTQILARFARNEFSLDSKATIGVEFQTRTLVIQ 60

Query: 61  QKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKN 120
            K+VKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYD+TKRQ+FDH+ RWLEELR HAD+N
Sbjct: 61  HKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRAHADRN 120

Query: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFRILTEIYRII 180
           IVIML GNK DL   RAVPTEDA+EFA++E LFF+ETSA+E+T +E AF  +LTEI+ I+
Sbjct: 121 IVIMLTGNKTDLEDQRAVPTEDAKEFAQKEGLFFLETSAMEATKLEDAFLTVLTEIFNIV 180

Query: 181 SKKSLAAGESIDIGVNPALFKGTNIVVPGQDQA-GGRKGCC 221
           +KK+LAA E+     NPA   G  I+VPG  Q   G+K CC
Sbjct: 181 NKKNLAADEN-QSNSNPASLTGKKILVPGPGQVIPGKKACC 220

[Close]

BLAST of Carg12738 vs. ExPASy TrEMBL
Match: A0A6J1EAZ2 (ras-related protein RABA4d OS=Cucurbita moschata OX=3662 GN=LOC111432472 PE=4 SV=1)

HSP 1 Score: 442.6 bits (1137), Expect = 9.9e-121
Identity = 223/223 (100.00%), Postives = 223/223 (100.00%), Query Frame = 0


Query: 1   MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLSRFSRNEFSVDSKATIGVEFQTKTLVID 60
           MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLSRFSRNEFSVDSKATIGVEFQTKTLVID
Sbjct: 1   MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLSRFSRNEFSVDSKATIGVEFQTKTLVID 60

Query: 61  QKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKN 120
           QKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKN
Sbjct: 61  QKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKN 120

Query: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFRILTEIYRII 180
           IVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFRILTEIYRII
Sbjct: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFRILTEIYRII 180

Query: 181 SKKSLAAGESIDIGVNPALFKGTNIVVPGQDQAGGRKGCCFAS 224
           SKKSLAAGESIDIGVNPALFKGTNIVVPGQDQAGGRKGCCFAS
Sbjct: 181 SKKSLAAGESIDIGVNPALFKGTNIVVPGQDQAGGRKGCCFAS 223

[Close]

BLAST of Carg12738 vs. ExPASy TrEMBL
Match: A0A6J1HTU8 (ras-related protein RABA4d OS=Cucurbita maxima OX=3661 GN=LOC111466102 PE=4 SV=1)

HSP 1 Score: 441.0 bits (1133), Expect = 2.9e-120
Identity = 222/223 (99.55%), Postives = 223/223 (100.00%), Query Frame = 0


Query: 1   MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLSRFSRNEFSVDSKATIGVEFQTKTLVID 60
           MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLSRFSRNEFSVDSKATIGVEFQTKTLVID
Sbjct: 1   MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLSRFSRNEFSVDSKATIGVEFQTKTLVID 60

Query: 61  QKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKN 120
           QKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKN
Sbjct: 61  QKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKN 120

Query: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFRILTEIYRII 180
           IVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFRILTEIYRII
Sbjct: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFRILTEIYRII 180

Query: 181 SKKSLAAGESIDIGVNPALFKGTNIVVPGQDQAGGRKGCCFAS 224
           SKKSLAAGESIDIGVNPALFKGTNIVVPGQ+QAGGRKGCCFAS
Sbjct: 181 SKKSLAAGESIDIGVNPALFKGTNIVVPGQEQAGGRKGCCFAS 223

[Close]

BLAST of Carg12738 vs. ExPASy TrEMBL
Match: A0A0A0KW90 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G152280 PE=4 SV=1)

HSP 1 Score: 428.7 bits (1101), Expect = 1.5e-116
Identity = 216/223 (96.86%), Postives = 218/223 (97.76%), Query Frame = 0


Query: 1   MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLSRFSRNEFSVDSKATIGVEFQTKTLVID 60
           MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLL+RFSRNEFSVDSKATIGVEFQTKTLVID
Sbjct: 1   MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVID 60

Query: 61  QKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKN 120
           QKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKN
Sbjct: 61  QKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKN 120

Query: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFRILTEIYRII 180
           IVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFF ILTEIYRII
Sbjct: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRII 180

Query: 181 SKKSLAAGESIDIGVNPALFKGTNIVVPGQDQAGGRKGCCFAS 224
           SKKSLAAGE IDIG NPALFKGT+IVVPGQDQ  GRKGCCFAS
Sbjct: 181 SKKSLAAGEEIDIGSNPALFKGTSIVVPGQDQDSGRKGCCFAS 223

[Close]

BLAST of Carg12738 vs. ExPASy TrEMBL
Match: A0A5A7UD85 (Ras-related protein RABA4d OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1192G00440 PE=4 SV=1)

HSP 1 Score: 428.3 bits (1100), Expect = 1.9e-116
Identity = 216/223 (96.86%), Postives = 217/223 (97.31%), Query Frame = 0


Query: 1   MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLSRFSRNEFSVDSKATIGVEFQTKTLVID 60
           MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLL+RFSRNEFSVDSKATIGVEFQTKTLVID
Sbjct: 1   MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVID 60

Query: 61  QKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKN 120
           QKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKN
Sbjct: 61  QKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKN 120

Query: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFRILTEIYRII 180
           IVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFF ILTEIYRII
Sbjct: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRII 180

Query: 181 SKKSLAAGESIDIGVNPALFKGTNIVVPGQDQAGGRKGCCFAS 224
           SKKSLAAGE IDIG NPALFKGTNIVVPGQDQ  G KGCCFAS
Sbjct: 181 SKKSLAAGEEIDIGSNPALFKGTNIVVPGQDQDSGTKGCCFAS 223

[Close]

BLAST of Carg12738 vs. ExPASy TrEMBL
Match: A0A1S3CDP9 (ras-related protein RABA4d OS=Cucumis melo OX=3656 GN=LOC103499562 PE=4 SV=1)

HSP 1 Score: 428.3 bits (1100), Expect = 1.9e-116
Identity = 216/223 (96.86%), Postives = 217/223 (97.31%), Query Frame = 0


Query: 1   MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLSRFSRNEFSVDSKATIGVEFQTKTLVID 60
           MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLL+RFSRNEFSVDSKATIGVEFQTKTLVID
Sbjct: 1   MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVID 60

Query: 61  QKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKN 120
           QKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKN
Sbjct: 61  QKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKN 120

Query: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFRILTEIYRII 180
           IVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFF ILTEIYRII
Sbjct: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRII 180

Query: 181 SKKSLAAGESIDIGVNPALFKGTNIVVPGQDQAGGRKGCCFAS 224
           SKKSLAAGE IDIG NPALFKGTNIVVPGQDQ  G KGCCFAS
Sbjct: 181 SKKSLAAGEEIDIGSNPALFKGTNIVVPGQDQDSGTKGCCFAS 223

[Close]

BLAST of Carg12738 vs. TAIR 10
Match: AT3G12160.1 (RAB GTPase homolog A4D )

HSP 1 Score: 380.6 bits (976), Expect = 8.9e-106
Identity = 191/220 (86.82%), Postives = 203/220 (92.27%), Query Frame = 0


Query: 1   MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLSRFSRNEFSVDSKATIGVEFQTKTLVID 60
           MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLL+RF+RNEFSVDSKATIGVEFQTKTLVID
Sbjct: 1   MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFARNEFSVDSKATIGVEFQTKTLVID 60

Query: 61  QKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKN 120
            KTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMA+WLEELRGHADKN
Sbjct: 61  NKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMAKWLEELRGHADKN 120

Query: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFRILTEIYRII 180
           IVIMLIGNKCDLGSLRAVPTEDAQEFA+RENLFFMETSALE+TNVETAF  ILTEIYRII
Sbjct: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTILTEIYRII 180

Query: 181 SKKSLAAGESIDIGVNPALFKGTNIVVPGQDQAGGRKGCC 221
           SKKSL A +  D   N +L KGT I++P + ++G R GCC
Sbjct: 181 SKKSLTADDD-DADGNSSLLKGTRIIIPSEQESGKRGGCC 219

[Close]

BLAST of Carg12738 vs. TAIR 10
Match: AT5G47960.1 (RAB GTPase homolog A4C )

HSP 1 Score: 345.5 bits (885), Expect = 3.2e-95
Identity = 171/223 (76.68%), Postives = 196/223 (87.89%), Query Frame = 0


Query: 1   MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLSRFSRNEFSVDSKATIGVEFQTKTLVID 60
           MS    ++NQKIDYVFKVVLIGDSAVGK+QLL+RFSRNEFS++SKATIGVEFQT+TL ID
Sbjct: 1   MSKFQSNFNQKIDYVFKVVLIGDSAVGKSQLLARFSRNEFSIESKATIGVEFQTRTLEID 60

Query: 61  QKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKN 120
           +KT+KAQIWDTAGQERYRAVTSAYYRGAVGAMLVYD+TKRQSFDH+ARWLEELRGHADKN
Sbjct: 61  RKTIKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDHVARWLEELRGHADKN 120

Query: 121 IVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFRILTEIYRII 180
           IVIMLIGNK DLG+LRAVPTEDA+EFA+RENLFFMETSAL+S NVE +F  +LTEIYRI+
Sbjct: 121 IVIMLIGNKTDLGTLRAVPTEDAKEFAQRENLFFMETSALDSNNVEPSFLTVLTEIYRIV 180

Query: 181 SKKSLAAGESIDIGVNPALFKGTNIVVPGQDQAGGRKGCCFAS 224
           SKK+L A E  + G + +L +GT IVV G++     KGCC  S
Sbjct: 181 SKKNLVANEEGESGGDSSLLQGTKIVVAGEETESKGKGCCGTS 223

[Close]

BLAST of Carg12738 vs. TAIR 10
Match: AT5G65270.1 (RAB GTPase homolog A4A )

HSP 1 Score: 306.2 bits (783), Expect = 2.1e-83
Identity = 157/219 (71.69%), Postives = 184/219 (84.02%), Query Frame = 0


Query: 5   YGDYNQKIDYVFKVVLIGDSAVGKTQLLSRFSRNEFSVDSKATIGVEFQTKTLVIDQKTV 64
           YGD +QKIDYVFKVVLIGDSAVGK+Q+L+R++R+EFS+DSKATIGVEFQT+TLVID K+V
Sbjct: 7   YGDPSQKIDYVFKVVLIGDSAVGKSQILARYARDEFSLDSKATIGVEFQTRTLVIDHKSV 66

Query: 65  KAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKNIVIM 124
           KAQIWDTAGQERYRAVTSAYYRGAVGAMLVYD+T+RQ+FDH+ RWLEELR HADKNIVI+
Sbjct: 67  KAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITRRQTFDHIPRWLEELRAHADKNIVII 126

Query: 125 LIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFRILTEIYRIISKKS 184
           LIGNK DL   RA+PTEDA+EFAE+E LFF+ETSA  +TNVE+AF  +LTEI+ I++KKS
Sbjct: 127 LIGNKSDLVDQRAIPTEDAKEFAEKEGLFFLETSAFNATNVESAFSTVLTEIFNIVNKKS 186

Query: 185 LAAGESIDIGVNPALFKGTNI-VVPGQDQAGGRKG--CC 221
           LAA E  + G NP    G  I +VPG  Q    K   CC
Sbjct: 187 LAASEDQENG-NPGSLAGKKIDIVPGPGQVIPNKSNMCC 224

[Close]

BLAST of Carg12738 vs. TAIR 10
Match: AT4G39990.1 (RAB GTPase homolog A4B )

HSP 1 Score: 295.0 bits (754), Expect = 4.9e-80
Identity = 151/222 (68.02%), Postives = 183/222 (82.43%), Query Frame = 0


Query: 5   YGDYNQKIDYVFKVVLIGDSAVGKTQLLSRFSRNEFSVDSKATIGVEFQTKTLVIDQKTV 64
           YG  + K+DYVFKVVLIGDSAVGK+QLL+RF+R+EFS+DSKATIGVEFQT+TL I+QK++
Sbjct: 7   YGGASGKVDYVFKVVLIGDSAVGKSQLLARFARDEFSMDSKATIGVEFQTRTLSIEQKSI 66

Query: 65  KAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKNIVIM 124
           KAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKR++F+H+ RWLEELR HADKNIVI+
Sbjct: 67  KAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRETFEHIPRWLEELRAHADKNIVII 126

Query: 125 LIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFRILTEIYRIISKKS 184
           LIGNK DL   RAVPTEDA+EFAE+E LFF+ETSAL +TNVE +F  ++T+IY  ++KK+
Sbjct: 127 LIGNKSDLEDQRAVPTEDAKEFAEKEGLFFLETSALNATNVENSFNTLMTQIYNTVNKKN 186

Query: 185 LAA-GESIDIGVNPALFKGTNIVVPGQDQAGGRK--GCCFAS 224
           LA+ G+S     NP    G  I++PG  Q    K   CC +S
Sbjct: 187 LASEGDS----NNPGSLAGKKILIPGSGQEIPAKTSTCCTSS 224

[Close]

BLAST of Carg12738 vs. TAIR 10
Match: AT1G09630.1 (RAB GTPase 11C )

HSP 1 Score: 266.9 bits (681), Expect = 1.4e-71
Identity = 133/215 (61.86%), Postives = 173/215 (80.47%), Query Frame = 0


Query: 9   NQKIDYVFKVVLIGDSAVGKTQLLSRFSRNEFSVDSKATIGVEFQTKTLVIDQKTVKAQI 68
           +++ DY+FKVVLIGDS VGK+ LLSRF+RNEF ++SK+TIGVEF T+TL ++ +TVKAQI
Sbjct: 6   DEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTVKAQI 65

Query: 69  WDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKNIVIMLIGN 128
           WDTAGQERYRA+TSAYYRGA+GA+LVYD+TK  +F++++RWL+ELR HAD NIVIMLIGN
Sbjct: 66  WDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMLIGN 125

Query: 129 KCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFRILTEIYRIISKKSLAAG 188
           K DL  LRAV TEDAQ +AE+E L F+ETSALE+ NVE AF  IL+E+YRIISKKS+++ 
Sbjct: 126 KTDLKHLRAVATEDAQSYAEKEGLSFIETSALEALNVEKAFQTILSEVYRIISKKSISSD 185

Query: 189 ESIDIGVNPALFKGTNIVVPGQDQAGGRKGCCFAS 224
           ++     N  + +G  I V    ++  +K CC +S
Sbjct: 186 QTT---ANANIKEGQTIDVAATSESNAKKPCCSSS 217

The following BLAST results are available for this feature:

BLAST of Carg12738 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022925137.1	2.0e-120	100.00	ras-related protein RABA4d [Cucurbita moschata] >XP_023518611.1 ras-related prot...	[more]
XP_022966454.1	5.9e-120	99.55	ras-related protein RABA4d [Cucurbita maxima]	[more]
XP_038881448.1	2.3e-116	96.86	ras-related protein RABA4d [Benincasa hispida]	[more]
XP_004150166.1	3.1e-116	96.86	ras-related protein RABA4d [Cucumis sativus] >KGN53823.1 hypothetical protein Cs...	[more]
XP_008460801.1	4.0e-116	96.86	PREDICTED: ras-related protein RABA4d [Cucumis melo] >KAA0053214.1 ras-related p...	[more]

BLAST of Carg12738 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LH50	1.2e-104	86.82	Ras-related protein RABA4d OS=Arabidopsis thaliana OX=3702 GN=RABA4D PE=1 SV=1	[more]
P25766	3.1e-95	79.91	Ras-related protein RGP1 OS=Oryza sativa subsp. japonica OX=39947 GN=RGP1 PE=2 S...	[more]
Q9FE79	4.5e-94	76.68	Ras-related protein RABA4c OS=Arabidopsis thaliana OX=3702 GN=RABA4C PE=2 SV=1	[more]
Q40191	1.4e-87	75.11	Ras-related protein Rab11A OS=Lotus japonicus OX=34305 GN=RAB11A PE=2 SV=1	[more]
Q40520	3.8e-85	71.95	Ras-related protein Rab11C OS=Nicotiana tabacum OX=4097 GN=RAB11C PE=2 SV=1	[more]

BLAST of Carg12738 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EAZ2	9.9e-121	100.00	ras-related protein RABA4d OS=Cucurbita moschata OX=3662 GN=LOC111432472 PE=4 SV...	[more]
A0A6J1HTU8	2.9e-120	99.55	ras-related protein RABA4d OS=Cucurbita maxima OX=3661 GN=LOC111466102 PE=4 SV=1	[more]
A0A0A0KW90	1.5e-116	96.86	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G152280 PE=4 SV=1	[more]
A0A5A7UD85	1.9e-116	96.86	Ras-related protein RABA4d OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaff...	[more]
A0A1S3CDP9	1.9e-116	96.86	ras-related protein RABA4d OS=Cucumis melo OX=3656 GN=LOC103499562 PE=4 SV=1	[more]

BLAST of Carg12738 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G12160.1	8.9e-106	86.82	RAB GTPase homolog A4D	[more]
AT5G47960.1	3.2e-95	76.68	RAB GTPase homolog A4C	[more]
AT5G65270.1	2.1e-83	71.69	RAB GTPase homolog A4A	[more]
AT4G39990.1	4.9e-80	68.02	RAB GTPase homolog A4B	[more]
AT1G09630.1	1.4e-71	61.86	RAB GTPase 11C	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR00449	RASTRNSFRMNG	coord: 16..37 score: 51.26 coord: 154..176 score: 42.45 coord: 39..55 score: 34.43 coord: 119..132 score: 52.08 coord: 57..79 score: 53.74
None	No IPR available	SMART	SM00175	rab_sub_5	coord: 16..179 e-value: 4.0E-106 score: 368.5
None	No IPR available	SMART	SM00176	ran_sub_2	coord: 21..214 e-value: 7.3E-6 score: 33.8
None	No IPR available	SMART	SM00173	ras_sub_4	coord: 13..179 e-value: 2.5E-26 score: 103.5
None	No IPR available	SMART	SM00177	arf_sub_2	coord: 1..181 e-value: 0.0021 score: 3.8
None	No IPR available	PANTHER	PTHR47978:SF27	BNAA05G26830D PROTEIN	coord: 1..221
None	No IPR available	PANTHER	PTHR47978	FAMILY NOT NAMED	coord: 1..221
None	No IPR available	PROSITE	PS51420	RHO	coord: 9..180 score: 9.306746
None	No IPR available	PROSITE	PS51419	RAB	coord: 11..220 score: 35.927368
None	No IPR available	CDD	cd01868	Rab11_like	coord: 13..177 e-value: 1.29409E-125 score: 350.322
IPR001806	Small GTPase	SMART	SM00174	rho_sub_3	coord: 18..176 e-value: 2.4E-11 score: 25.7
IPR001806	Small GTPase	PFAM	PF00071	Ras	coord: 17..177 e-value: 2.8E-61 score: 205.9
IPR001806	Small GTPase	PROSITE	PS51421	RAS	coord: 10..223 score: 17.198099
IPR005225	Small GTP-binding protein domain	TIGRFAM	TIGR00231	TIGR00231	coord: 15..169 e-value: 1.3E-36 score: 123.8
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 8..196 e-value: 6.8E-70 score: 236.4
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 11..183

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg12738-RA	Carg12738-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0080092	regulation of pollen tube growth
cellular_component	GO:0045177	apical part of cell
cellular_component	GO:0070382	exocytic vesicle
cellular_component	GO:0090404	pollen tube tip
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0005525	GTP binding
molecular_function	GO:0019900	kinase binding