Carg12733 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg12733
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	WD_REPEATS_REGION domain-containing protein
Location	Carg_Chr07: 7800998 .. 7801360 (+)
RNA-Seq Expression	Carg12733
Synteny	Carg12733

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCGTCGCCAACGCCCTTTGCAACCGCCTCAAATATGCTCCGGCACCGCCTTCTCCCTTCTCTCAGGACCCGCGGTGGCGCCGCCACAGGCCAGAGCCGGTGGACCAGTCCCGGCCACGAGGAGAAGCCAAAGGGCTATCTTTTCAATCGGACGCCGCCTCCGCCAGGTCAGTCCCGTAAATGGGAGGATTGGGAGCTTCCTTGTTATGTTACTAGTTTTCTTACTATCGTGATTCTTGGCGTTGGCCTCAACGCCAAGCCTGATCTCACAATTGAGACTTGGGCTCACCAGAAGGCCCTAGAGCGTCTTGAGATGGAGAATCTGGCTATGTCTGGCTCTGGATCATCTGAATCTGATTGA

mRNA sequence

ATGCCGTCGCCAACGCCCTTTGCAACCGCCTCAAATATGCTCCGGCACCGCCTTCTCCCTTCTCTCAGGACCCGCGGTGGCGCCGCCACAGGCCAGAGCCGGTGGACCAGTCCCGGCCACGAGGAGAAGCCAAAGGGCTATCTTTTCAATCGGACGCCGCCTCCGCCAGGTCAGTCCCGTAAATGGGAGGATTGGGAGCTTCCTTGTTATGTTACTAGTTTTCTTACTATCGTGATTCTTGGCGTTGGCCTCAACGCCAAGCCTGATCTCACAATTGAGACTTGGGCTCACCAGAAGGCCCTAGAGCGTCTTGAGATGGAGAATCTGGCTATGTCTGGCTCTGGATCATCTGAATCTGATTGA

Coding sequence (CDS)

ATGCCGTCGCCAACGCCCTTTGCAACCGCCTCAAATATGCTCCGGCACCGCCTTCTCCCTTCTCTCAGGACCCGCGGTGGCGCCGCCACAGGCCAGAGCCGGTGGACCAGTCCCGGCCACGAGGAGAAGCCAAAGGGCTATCTTTTCAATCGGACGCCGCCTCCGCCAGGTCAGTCCCGTAAATGGGAGGATTGGGAGCTTCCTTGTTATGTTACTAGTTTTCTTACTATCGTGATTCTTGGCGTTGGCCTCAACGCCAAGCCTGATCTCACAATTGAGACTTGGGCTCACCAGAAGGCCCTAGAGCGTCTTGAGATGGAGAATCTGGCTATGTCTGGCTCTGGATCATCTGAATCTGATTGA

Protein sequence

MPSPTPFATASNMLRHRLLPSLRTRGGAATGQSRWTSPGHEEKPKGYLFNRTPPPPGQSRKWEDWELPCYVTSFLTIVILGVGLNAKPDLTIETWAHQKALERLEMENLAMSGSGSSESD

Homology

[Close]

BLAST of Carg12733 vs. NCBI nr
Match: XP_022925065.1 (uncharacterized protein LOC111432424 [Cucurbita moschata] >KAG6595653.1 hypothetical protein SDJN03_12206, partial [Cucurbita argyrosperma subsp. sororia] >KAG7027613.1 hypothetical protein SDJN02_11627, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 251.1 bits (640), Expect = 4.7e-63
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MPSPTPFATASNMLRHRLLPSLRTRGGAATGQSRWTSPGHEEKPKGYLFNRTPPPPGQSR 60
           MPSPTPFATASNMLRHRLLPSLRTRGGAATGQSRWTSPGHEEKPKGYLFNRTPPPPGQSR
Sbjct: 1   MPSPTPFATASNMLRHRLLPSLRTRGGAATGQSRWTSPGHEEKPKGYLFNRTPPPPGQSR 60

Query: 61  KWEDWELPCYVTSFLTIVILGVGLNAKPDLTIETWAHQKALERLEMENLAMSGSGSSESD 120
           KWEDWELPCYVTSFLTIVILGVGLNAKPDLTIETWAHQKALERLEMENLAMSGSGSSESD
Sbjct: 61  KWEDWELPCYVTSFLTIVILGVGLNAKPDLTIETWAHQKALERLEMENLAMSGSGSSESD 120

[Close]

BLAST of Carg12733 vs. NCBI nr
Match: XP_022966491.1 (uncharacterized protein LOC111466129 [Cucurbita maxima])

HSP 1 Score: 248.1 bits (632), Expect = 4.0e-62
Identity = 118/120 (98.33%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MPSPTPFATASNMLRHRLLPSLRTRGGAATGQSRWTSPGHEEKPKGYLFNRTPPPPGQSR 60
           MPSPTPFATASNMLRHRLLPSLRTRGGAATGQSRWTSPGHEE+PKGYLFNRTPPPPGQSR
Sbjct: 1   MPSPTPFATASNMLRHRLLPSLRTRGGAATGQSRWTSPGHEEQPKGYLFNRTPPPPGQSR 60

Query: 61  KWEDWELPCYVTSFLTIVILGVGLNAKPDLTIETWAHQKALERLEMENLAMSGSGSSESD 120
           KWEDWELPCYVTSFLTIVILGVGLNAKPDLTIETWAHQKALERLEMENLA+SGSGSSESD
Sbjct: 61  KWEDWELPCYVTSFLTIVILGVGLNAKPDLTIETWAHQKALERLEMENLAISGSGSSESD 120

[Close]

BLAST of Carg12733 vs. NCBI nr
Match: XP_023517134.1 (uncharacterized protein LOC111780983 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 247.7 bits (631), Expect = 5.2e-62
Identity = 118/120 (98.33%), Postives = 119/120 (99.17%), Query Frame = 0


Query: 1   MPSPTPFATASNMLRHRLLPSLRTRGGAATGQSRWTSPGHEEKPKGYLFNRTPPPPGQSR 60
           MPSPTPFATASNMLRHRLLPSLRTRGGAATGQSRWTSPGHEE+PKGYLFNRTPPPPGQSR
Sbjct: 1   MPSPTPFATASNMLRHRLLPSLRTRGGAATGQSRWTSPGHEERPKGYLFNRTPPPPGQSR 60

Query: 61  KWEDWELPCYVTSFLTIVILGVGLNAKPDLTIETWAHQKALERLEMENLAMSGSGSSESD 120
           KWEDWELPCYVTSFLTIVILGVGLNAKPDLTIETWAHQKALERLEMENLAMS SGSSESD
Sbjct: 61  KWEDWELPCYVTSFLTIVILGVGLNAKPDLTIETWAHQKALERLEMENLAMSASGSSESD 120

[Close]

BLAST of Carg12733 vs. NCBI nr
Match: XP_038881129.1 (uncharacterized protein LOC120072731 [Benincasa hispida])

HSP 1 Score: 238.0 bits (606), Expect = 4.1e-59
Identity = 112/120 (93.33%), Postives = 115/120 (95.83%), Query Frame = 0


Query: 1   MPSPTPFATASNMLRHRLLPSLRTRGGAATGQSRWTSPGHEEKPKGYLFNRTPPPPGQSR 60
           MPSPTPF  ASNMLRHRLLPSLRTRGGAA GQSRWTSPGHE++PKGYLFNRTPPPPGQSR
Sbjct: 1   MPSPTPFTNASNMLRHRLLPSLRTRGGAAAGQSRWTSPGHEDRPKGYLFNRTPPPPGQSR 60

Query: 61  KWEDWELPCYVTSFLTIVILGVGLNAKPDLTIETWAHQKALERLEMENLAMSGSGSSESD 120
           KWEDWELPCYVTSFLTIVILGVGLNAKPDLTIETWAHQKALERLEME L +SGSGSSESD
Sbjct: 61  KWEDWELPCYVTSFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGVSGSGSSESD 120

[Close]

BLAST of Carg12733 vs. NCBI nr
Match: XP_022151653.1 (uncharacterized protein LOC111019565 [Momordica charantia])

HSP 1 Score: 234.6 bits (597), Expect = 4.5e-58
Identity = 109/120 (90.83%), Postives = 114/120 (95.00%), Query Frame = 0


Query: 1   MPSPTPFATASNMLRHRLLPSLRTRGGAATGQSRWTSPGHEEKPKGYLFNRTPPPPGQSR 60
           MPSP PF  ASNMLRHRLLP+LRTRGGAA GQSRWTSPGHEE+PKGYLFNRTPPPPGQSR
Sbjct: 1   MPSPAPFTRASNMLRHRLLPTLRTRGGAAAGQSRWTSPGHEERPKGYLFNRTPPPPGQSR 60

Query: 61  KWEDWELPCYVTSFLTIVILGVGLNAKPDLTIETWAHQKALERLEMENLAMSGSGSSESD 120
           KWEDWELPCY+TSFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEN+ +S SGSSESD
Sbjct: 61  KWEDWELPCYITSFLTIVILGVGLNAKPDLTIETWAHQKALERLEMENMGISASGSSESD 120

[Close]

BLAST of Carg12733 vs. ExPASy TrEMBL
Match: A0A6J1EGU8 (uncharacterized protein LOC111432424 OS=Cucurbita moschata OX=3662 GN=LOC111432424 PE=4 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 2.3e-63
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MPSPTPFATASNMLRHRLLPSLRTRGGAATGQSRWTSPGHEEKPKGYLFNRTPPPPGQSR 60
           MPSPTPFATASNMLRHRLLPSLRTRGGAATGQSRWTSPGHEEKPKGYLFNRTPPPPGQSR
Sbjct: 1   MPSPTPFATASNMLRHRLLPSLRTRGGAATGQSRWTSPGHEEKPKGYLFNRTPPPPGQSR 60

Query: 61  KWEDWELPCYVTSFLTIVILGVGLNAKPDLTIETWAHQKALERLEMENLAMSGSGSSESD 120
           KWEDWELPCYVTSFLTIVILGVGLNAKPDLTIETWAHQKALERLEMENLAMSGSGSSESD
Sbjct: 61  KWEDWELPCYVTSFLTIVILGVGLNAKPDLTIETWAHQKALERLEMENLAMSGSGSSESD 120

[Close]

BLAST of Carg12733 vs. ExPASy TrEMBL
Match: A0A6J1HPH2 (uncharacterized protein LOC111466129 OS=Cucurbita maxima OX=3661 GN=LOC111466129 PE=4 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 1.9e-62
Identity = 118/120 (98.33%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MPSPTPFATASNMLRHRLLPSLRTRGGAATGQSRWTSPGHEEKPKGYLFNRTPPPPGQSR 60
           MPSPTPFATASNMLRHRLLPSLRTRGGAATGQSRWTSPGHEE+PKGYLFNRTPPPPGQSR
Sbjct: 1   MPSPTPFATASNMLRHRLLPSLRTRGGAATGQSRWTSPGHEEQPKGYLFNRTPPPPGQSR 60

Query: 61  KWEDWELPCYVTSFLTIVILGVGLNAKPDLTIETWAHQKALERLEMENLAMSGSGSSESD 120
           KWEDWELPCYVTSFLTIVILGVGLNAKPDLTIETWAHQKALERLEMENLA+SGSGSSESD
Sbjct: 61  KWEDWELPCYVTSFLTIVILGVGLNAKPDLTIETWAHQKALERLEMENLAISGSGSSESD 120

[Close]

BLAST of Carg12733 vs. ExPASy TrEMBL
Match: A0A6J1DCT8 (uncharacterized protein LOC111019565 OS=Momordica charantia OX=3673 GN=LOC111019565 PE=4 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 2.2e-58
Identity = 109/120 (90.83%), Postives = 114/120 (95.00%), Query Frame = 0


Query: 1   MPSPTPFATASNMLRHRLLPSLRTRGGAATGQSRWTSPGHEEKPKGYLFNRTPPPPGQSR 60
           MPSP PF  ASNMLRHRLLP+LRTRGGAA GQSRWTSPGHEE+PKGYLFNRTPPPPGQSR
Sbjct: 1   MPSPAPFTRASNMLRHRLLPTLRTRGGAAAGQSRWTSPGHEERPKGYLFNRTPPPPGQSR 60

Query: 61  KWEDWELPCYVTSFLTIVILGVGLNAKPDLTIETWAHQKALERLEMENLAMSGSGSSESD 120
           KWEDWELPCY+TSFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEN+ +S SGSSESD
Sbjct: 61  KWEDWELPCYITSFLTIVILGVGLNAKPDLTIETWAHQKALERLEMENMGISASGSSESD 120

[Close]

BLAST of Carg12733 vs. ExPASy TrEMBL
Match: A0A067KZT1 (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_06813 PE=4 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 6.2e-53
Identity = 102/118 (86.44%), Postives = 105/118 (88.98%), Query Frame = 0


Query: 1   MPSPTPFATASNMLRHRLLPSLRTRGGAATGQSRWTSPGHEEKPKGYLFNRTPPPPGQSR 60
           MPSP PF TAS MLR RL  SLRTRGG A G SRWTSPGHEE+PKGYLFNRTPPP GQSR
Sbjct: 1   MPSPQPFTTASTMLRQRLASSLRTRGGGAAGTSRWTSPGHEERPKGYLFNRTPPPAGQSR 60

Query: 61  KWEDWELPCYVTSFLTIVILGVGLNAKPDLTIETWAHQKALERLEMENLAMSGSGSSE 119
           KWEDWELPCY+TSFLTIVILGVGLNAKPDLTIETWAHQKALERLEME L +SGSG SE
Sbjct: 61  KWEDWELPCYITSFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGLSGSGESE 118

[Close]

BLAST of Carg12733 vs. ExPASy TrEMBL
Match: I3NMS3 (Uncharacterized protein OS=Hevea brasiliensis OX=3981 PE=2 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 1.1e-52
Identity = 102/118 (86.44%), Postives = 106/118 (89.83%), Query Frame = 0


Query: 1   MPSPTPFATASNMLRHRLLPSLRTRGGAATGQSRWTSPGHEEKPKGYLFNRTPPPPGQSR 60
           MPS  PF TAS+MLR RL  SLRTRGGAA G SRWTSPGHEE+PKGYLFNRTPPPPGQSR
Sbjct: 1   MPSQQPFTTASSMLRQRLASSLRTRGGAAAGPSRWTSPGHEERPKGYLFNRTPPPPGQSR 60

Query: 61  KWEDWELPCYVTSFLTIVILGVGLNAKPDLTIETWAHQKALERLEMENLAMSGSGSSE 119
           KWEDWELPCY+TSFLTIVILGVGLNAKPDL+IETWAHQKALERLEME L  SGSG SE
Sbjct: 61  KWEDWELPCYITSFLTIVILGVGLNAKPDLSIETWAHQKALERLEMEKLGTSGSGESE 118

[Close]

BLAST of Carg12733 vs. TAIR 10
Match: AT3G57785.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G42310.1); Has 121 Blast hits to 121 proteins in 51 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 48; Plants - 67; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). )

HSP 1 Score: 173.3 bits (438), Expect = 1.2e-43
Identity = 83/116 (71.55%), Postives = 93/116 (80.17%), Query Frame = 0


Query: 1   MPSPTPFATASNMLRHRLLPSLRTRGGAATGQSRWTSPGHEEKPKGYLFNRTPPPPGQSR 60
           M S  P   A+  LR+R+    R+ G  +TG SRW +PGHEE+PKGY  NRTPPPPGQSR
Sbjct: 1   MASTKPLIVAAKTLRNRI--HFRS-GSTSTGPSRWATPGHEERPKGYFMNRTPPPPGQSR 60

Query: 61  KWEDWELPCYVTSFLTIVILGVGLNAKPDLTIETWAHQKALERLEMENLAMSGSGS 117
           KWEDWELPCY+TSFLTIVILGVGLNAKPDL+IETWAHQKALERLEME LA +G  S
Sbjct: 61  KWEDWELPCYITSFLTIVILGVGLNAKPDLSIETWAHQKALERLEMEKLASAGDSS 113

[Close]

BLAST of Carg12733 vs. TAIR 10
Match: AT2G42310.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G57785.1); Has 115 Blast hits to 115 proteins in 48 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 44; Plants - 67; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 169.5 bits (428), Expect = 1.7e-42
Identity = 80/116 (68.97%), Postives = 89/116 (76.72%), Query Frame = 0


Query: 1   MPSPTPFATASNMLRHRLLPSLRTRGGAATGQSRWTSPGHEEKPKGYLFNRTPPPPGQSR 60
           MPS      A+  LR+R+       G  + G SRW +PGHEE+PKGY  NRTPP PGQSR
Sbjct: 1   MPSTQSLTVAAKTLRNRI---FSRSGSTSAGPSRWATPGHEERPKGYFMNRTPPAPGQSR 60

Query: 61  KWEDWELPCYVTSFLTIVILGVGLNAKPDLTIETWAHQKALERLEMENLAMSGSGS 117
           KWEDWELPCY+TSFLTIVILGVGLNAKPDL+IETWAHQKALERLEME LA +G  S
Sbjct: 61  KWEDWELPCYITSFLTIVILGVGLNAKPDLSIETWAHQKALERLEMEKLATAGDSS 113

The following BLAST results are available for this feature:

BLAST of Carg12733 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022925065.1	4.7e-63	100.00	uncharacterized protein LOC111432424 [Cucurbita moschata] >KAG6595653.1 hypothet...	[more]
XP_022966491.1	4.0e-62	98.33	uncharacterized protein LOC111466129 [Cucurbita maxima]	[more]
XP_023517134.1	5.2e-62	98.33	uncharacterized protein LOC111780983 [Cucurbita pepo subsp. pepo]	[more]
XP_038881129.1	4.1e-59	93.33	uncharacterized protein LOC120072731 [Benincasa hispida]	[more]
XP_022151653.1	4.5e-58	90.83	uncharacterized protein LOC111019565 [Momordica charantia]	[more]

BLAST of Carg12733 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg12733 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EGU8	2.3e-63	100.00	uncharacterized protein LOC111432424 OS=Cucurbita moschata OX=3662 GN=LOC1114324...	[more]
A0A6J1HPH2	1.9e-62	98.33	uncharacterized protein LOC111466129 OS=Cucurbita maxima OX=3661 GN=LOC111466129...	[more]
A0A6J1DCT8	2.2e-58	90.83	uncharacterized protein LOC111019565 OS=Momordica charantia OX=3673 GN=LOC111019...	[more]
A0A067KZT1	6.2e-53	86.44	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_06813 PE=4 SV=1	[more]
I3NMS3	1.1e-52	86.44	Uncharacterized protein OS=Hevea brasiliensis OX=3981 PE=2 SV=1	[more]

BLAST of Carg12733 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G57785.1	1.2e-43	71.55	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT2G42310.1	1.7e-42	68.97	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 21..60
None	No IPR available	PANTHER	PTHR40637	ESSS SUBUNIT OF NADH:UBIQUINONE OXIDOREDUCTASE (COMPLEX I) PROTEIN	coord: 7..116
None	No IPR available	PANTHER	PTHR40637:SF2	COMPLEX I SUBUNIT	coord: 7..116

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg12733-RA	Carg12733-RA	mRNA