Carg12732 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg12732
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	protein cornichon homolog 1-like isoform X2
Location	Carg_Chr07: 7796472 .. 7799902 (+)
RNA-Seq Expression	Carg12732
Synteny	Carg12732

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATCTAAAGAGGAAATTGTGAGTGAAATTGATGAAACTTGGAAATGTGGTTGAAACTGGAAGCAATCATGATGGAACTACTGAAGCTTCATCGCAGTATGTAGCTTTAGACTCTATAGAGTTCAAACTCTCAAGAACACTGAACTAGCGAGATCGCCTTACCATCAACAATCAAGCTTTGAGTTCTGGAATTTCTGAACTGACGCTGCGCGGTTGTAGAAATGGCGTGGAGTCTGATCTTTTGGTTCGTCTCTTTCTGTATCAACATCGCACTTCTCGTCCTCAACTTTTACCAGGTACACCCTTTCTAATCTCTCATAAACCCTAGTTTTCGCGATCAAGTTACAGATTCTTTTGCGAGAAAGTTTGAATGCGTCTACTGAAACGTAGCCCTAATGTTGTTGTTGTGTTTGTCTTGTTGTAATCTTGTTGTTGCTTATTCAGTAAGCAGTGGAGGTCTGATGCATATCTCAGATTCAGATTCGGTTTTCTTGAAGAGAGAATTTCGACTTCAATTTTATTTACGTTTATATGTGACCTAGACCTAGATTTTGATTGATGGAACCTTTACACTTTCGTTGCGCCTACTTTTGAAATAGATTCAATACCTACTTACTGTTCCACCGCTCTCTTAGTTTCATAATTTTACGGTGATGAGTTTGATATCTTGATCAATCGTGCACTGGTAGCCGAAGTGAACGTATTCACAAAATGACATATCTACCTGTGAAATAACCGGCCCCTTCCATGGAATGGATTGATCATTTCCTTTTGCATCTGAGTCAACGATGTACTCTTACCTTGTTTTGTAGTCTCCAGAGAAGTGGCTGTATATGTAACTTGTTGGGATAAAAGATTGTAAATGTATTTCAACCATGAAACGGGCTTCAATTATTATAGTTGATTATACTCTAATAACTGGTTCTTGATGCGAATGGAAGTAAAAGTGATCCCAATTCCTGCGGGTTATGTCTGGGACATCAATAGATTGTTGGCTTTACTCCCATTTCGTTTAATATGATGTACAGTGGCAGGAGGAGAGAATTTATTGCTCTTATTTTCATTTGAACCATGACGATTTGTCCTCTCTATTGCTTGTATTCTTATAGACTTGATGAATGTTTAGATTTTACACTTGTAGATGAACATCACTAGCCATTGCAAAGAGTAATATTTATTGTCTAGTTACATCTGTGCTTTTAAGTTGGAAGCATCTAATGGTTGTGGTTGATCTTTTTTTGTAGCTCTTGGTATTAACGGATTTGGAGGCAGATTATTTGAACATCTATGATTCATCATCTCGCATTAACAAACTTGTTGTTCCAGAGTTTTTGGTGCAAGGACTGTTTTGCTCTCTTTTCCTCTTCACAGGCCACTGGTTCATGTTTCTTATAACCGTCCCTGTTAGCTGTTATCACATAAATTTGTAAGTGTTTCTTGACTCTGAAATAAGGCCTGGTATATATTTTCTTTTACTGTGTGCTATGGATGAGACCTATTGGTGGCGTTCTTTGTTGATTTTCCCCTTCTACTGTCTGGAAGTGTTATGTATGAGGCTTATGATGTCCCTTACTTGTAAAATGAATCTAGCTTGCACTCATATTATATATACTTTATTCTTTTGTTATGGAAAAAAGCATTATGCATTCTTTTTACTTTCTTAATACGCTTTGTTCTATTATCAAACACCATTCTTTTAGATGAATGTATATAGTGAAAACTTCTTGGTACGGTTAGAAACATCGAAGATTCTCACTCTGAATGTATATAGTGAAAACTTCTTGGACGATGTTAATGGTAAACCGATTAACCTGGTGCCAATTATTGCTTTCGTCATTTTTTCTGAACATTCTTATTCCATGTAGCTATCCCAGTACAAGACTCAAATTTAATTCCATTACACAGGTCCTCCATCAGCGGAAGTATGCCAACTTATTGTTTGAAACTTTTATCCCACATAAGTCTTTAATAAATTTTTGGTGATCGATGACCATCTACTACTGGTCATTTTTTAGAGTAAAACTAAAACTTAGTAATGTAGGATGGTTAACAGGATAAAGAAAAAACAAGGAAAAAAGAAAATGAATTATGTTCCACTACTTGGACTGAGTTTCTTTCAAGTATTTCTCCATGTTTTGTGTTTATGATGAATTATCCTGTTACAATGCCCCAGGTTCTTGAAGAGGGAGCATCTTATTGATGTTACTGAGGTGTTCAAAACTCTAAAACGTGAGAAGTATTTTCGTTTTGCCAAGCTTATCTTCTACTTGCTTCTGTTCCTCGTAGTAATCTTCAGGTTAGTCTGAATTTTTCCTTGCGTCATTCTGCTTTTCTTCTTAACTATTTGGAAGGTTGGATATTTCTGATTGAGGTTTTCCTTGCTGTTTTCTGTATAGAATAATAATGGTAGCGGGAATGAAATCTGTTTTTGACTCTGCACCTGAGGATATAGACATTCGCTCCACTGTTCTCGAATTCTAGAGTATTTATTTAACCAACTAGCTTAAAGTCGAATCCATCCTTTGTTTTGAAATACGTATATGATTACAATGAAAATAGTCAACTTATTTATTCATTGCAAAGTTCTTAAAGATAATGATGTTACACTGACTTGGGATTGTTTTGTTGGTTTTGGAAGCTATATACCATTACTCTCTGTTCTCTTGACGCCTTTTAGTACCTTGTTAGTAATGCATTATTGCAAGTTTTTGGATTTTGCTCTGTTTGATCCAAATGTTGTCTCTTTCTAACCTTTTCTAGTCCCAATATTTTCTATAAATTAACTTAGAATGTCCAATACATATTTTATGTTAAAAAATGTAGCTTTGTTTAGTTTTATGGTCGACTCCTATGCTTCTTGAGTGAGATCCTGGTACATATGCACTTGCATACACATATTTTCGCCTCTCTTACTGGCATTCTTACATGTATTGAATTAACATGCAATGCAGGCTTACCTTGTCTGCTTTCAACGCATTATCTGATGAAGGCGACGTCCTACATTTATTTTGATTGCGATTCTCTTACTCGAAGTTTGTATTACGGGTTCTATAGCATGTCTGTGGTTGGTATTTGTTTGGGAAGTTACACGCAAGGAAACAAATTTGAACAAAGCAACTTCAAACACGTTCATACAGGTTTTTCCTCCCATATTCCCATTCTTTGCTTTGGTTGGCTCCTCTAGCATTCTCGTAAGACTTTGACCCAAGGAATGCTTGTATGTAGAGAGGATTGAAGTTCATAGATTCTCCAGTTTAAAATGATGTGATTGTAGAATGAGTTTTAGCATTGTAAGCATATTGTTCAATTAGTTGACATGTGATTTGTTTGGTTACTTGACAACTTACCGGTAATTTTCAGGGCTCTCCAAGTTTAGAGTCCCATTTCTTTGCATGTTTTTGAAATATCAGCTTGAGTTAGCCAATTTTTAGT

mRNA sequence

AATCTAAAGAGGAAATTGTGAGTGAAATTGATGAAACTTGGAAATGTGGTTGAAACTGGAAGCAATCATGATGGAACTACTGAAGCTTCATCGCAGTATGTAGCTTTAGACTCTATAGAGTTCAAACTCTCAAGAACACTGAACTAGCGAGATCGCCTTACCATCAACAATCAAGCTTTGAGTTCTGGAATTTCTGAACTGACGCTGCGCGGTTGTAGAAATGGCGTGGAGTCTGATCTTTTGGTTCGTCTCTTTCTGTATCAACATCGCACTTCTCGTCCTCAACTTTTACCAGCTCTTGGTATTAACGGATTTGGAGGCAGATTATTTGAACATCTATGATTCATCATCTCGCATTAACAAACTTGTTGTTCCAGAGTTTTTGGTGCAAGGACTGTTTTGCTCTCTTTTCCTCTTCACAGGCCACTGGTTCATGTTTCTTATAACCGTCCCTGTTAGCTGTTATCACATAAATTTGTTCTTGAAGAGGGAGCATCTTATTGATGTTACTGAGGTGTTCAAAACTCTAAAACGTGAGAAGTATTTTCGTTTTGCCAAGCTTATCTTCTACTTGCTTCTGTTCCTCGTAGTAATCTTCAGGCTTACCTTGTCTGCTTTCAACGCATTATCTGATGAAGGCGACGTCCTACATTTATTTTGATTGCGATTCTCTTACTCGAAGTTTGTATTACGGGTTCTATAGCATGTCTGTGGTTGGTATTTGTTTGGGAAGTTACACGCAAGGAAACAAATTTGAACAAAGCAACTTCAAACACGTTCATACAGGTTTTTCCTCCCATATTCCCATTCTTTGCTTTGGTTGGCTCCTCTAGCATTCTCGTAAGACTTTGACCCAAGGAATGCTTGTATGTAGAGAGGATTGAAGTTCATAGATTCTCCAGTTTAAAATGATGTGATTGTAGAATGAGTTTTAGCATTGTAAGCATATTGTTCAATTAGTTGACATGTGATTTGTTTGGTTACTTGACAACTTACCGGTAATTTTCAGGGCTCTCCAAGTTTAGAGTCCCATTTCTTTGCATGTTTTTGAAATATCAGCTTGAGTTAGCCAATTTTTAGT

Coding sequence (CDS)

ATGGCGTGGAGTCTGATCTTTTGGTTCGTCTCTTTCTGTATCAACATCGCACTTCTCGTCCTCAACTTTTACCAGCTCTTGGTATTAACGGATTTGGAGGCAGATTATTTGAACATCTATGATTCATCATCTCGCATTAACAAACTTGTTGTTCCAGAGTTTTTGGTGCAAGGACTGTTTTGCTCTCTTTTCCTCTTCACAGGCCACTGGTTCATGTTTCTTATAACCGTCCCTGTTAGCTGTTATCACATAAATTTGTTCTTGAAGAGGGAGCATCTTATTGATGTTACTGAGGTGTTCAAAACTCTAAAACGTGAGAAGTATTTTCGTTTTGCCAAGCTTATCTTCTACTTGCTTCTGTTCCTCGTAGTAATCTTCAGGCTTACCTTGTCTGCTTTCAACGCATTATCTGATGAAGGCGACGTCCTACATTTATTTTGA

Protein sequence

MAWSLIFWFVSFCINIALLVLNFYQLLVLTDLEADYLNIYDSSSRINKLVVPEFLVQGLFCSLFLFTGHWFMFLITVPVSCYHINLFLKREHLIDVTEVFKTLKREKYFRFAKLIFYLLLFLVVIFRLTLSAFNALSDEGDVLHLF

Homology

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BLAST of Carg12732 vs. NCBI nr
Match: KAG7027612.1 (Protein cornichon-like 1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 281.6 bits (719), Expect = 3.9e-72
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 1   MAWSLIFWFVSFCINIALLVLNFYQLLVLTDLEADYLNIYDSSSRINKLVVPEFLVQGLF 60
           MAWSLIFWFVSFCINIALLVLNFYQLLVLTDLEADYLNIYDSSSRINKLVVPEFLVQGLF
Sbjct: 1   MAWSLIFWFVSFCINIALLVLNFYQLLVLTDLEADYLNIYDSSSRINKLVVPEFLVQGLF 60

Query: 61  CSLFLFTGHWFMFLITVPVSCYHINLFLKREHLIDVTEVFKTLKREKYFRFAKLIFYLLL 120
           CSLFLFTGHWFMFLITVPVSCYHINLFLKREHLIDVTEVFKTLKREKYFRFAKLIFYLLL
Sbjct: 61  CSLFLFTGHWFMFLITVPVSCYHINLFLKREHLIDVTEVFKTLKREKYFRFAKLIFYLLL 120

Query: 121 FLVVIFRLTLSAFNALSDEGDVLHLF 147
           FLVVIFRLTLSAFNALSDEGDVLHLF
Sbjct: 121 FLVVIFRLTLSAFNALSDEGDVLHLF 146

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BLAST of Carg12732 vs. NCBI nr
Match: XP_022925062.1 (protein cornichon homolog 1-like isoform X1 [Cucurbita moschata] >XP_022966479.1 protein cornichon homolog 1-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 278.9 bits (712), Expect = 2.6e-71
Identity = 145/146 (99.32%), Postives = 145/146 (99.32%), Query Frame = 0


Query: 1   MAWSLIFWFVSFCINIALLVLNFYQLLVLTDLEADYLNIYDSSSRINKLVVPEFLVQGLF 60
           MAWSLIFWFVSFCINIALLVLNFYQLLVLTDLEADYLNIYDSSSRINKLVVPEFLVQGLF
Sbjct: 1   MAWSLIFWFVSFCINIALLVLNFYQLLVLTDLEADYLNIYDSSSRINKLVVPEFLVQGLF 60

Query: 61  CSLFLFTGHWFMFLITVPVSCYHINLFLKREHLIDVTEVFKTLKREKYFRFAKLIFYLLL 120
           CSLFLFTGHWFMFLITVPVSCYHINLFLKREHLIDVTEVFKTLKREKYFRFAKLIFYLLL
Sbjct: 61  CSLFLFTGHWFMFLITVPVSCYHINLFLKREHLIDVTEVFKTLKREKYFRFAKLIFYLLL 120

Query: 121 FLVVIFRLTLSAFNALSDEGDVLHLF 147
           FLVVIFRLTLSAFNALSDE DVLHLF
Sbjct: 121 FLVVIFRLTLSAFNALSDEDDVLHLF 146

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BLAST of Carg12732 vs. NCBI nr
Match: XP_023518963.1 (protein cornichon homolog 1-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 277.3 bits (708), Expect = 7.4e-71
Identity = 144/146 (98.63%), Postives = 144/146 (98.63%), Query Frame = 0


Query: 1   MAWSLIFWFVSFCINIALLVLNFYQLLVLTDLEADYLNIYDSSSRINKLVVPEFLVQGLF 60
           MAWSLIFWFVSFC NIALLVLNFYQLLVLTDLEADYLNIYDSSSRINKLVVPEFLVQGLF
Sbjct: 1   MAWSLIFWFVSFCFNIALLVLNFYQLLVLTDLEADYLNIYDSSSRINKLVVPEFLVQGLF 60

Query: 61  CSLFLFTGHWFMFLITVPVSCYHINLFLKREHLIDVTEVFKTLKREKYFRFAKLIFYLLL 120
           CSLFLFTGHWFMFLITVPVSCYHINLFLKREHLIDVTEVFKTLKREKYFRFAKLIFYLLL
Sbjct: 61  CSLFLFTGHWFMFLITVPVSCYHINLFLKREHLIDVTEVFKTLKREKYFRFAKLIFYLLL 120

Query: 121 FLVVIFRLTLSAFNALSDEGDVLHLF 147
           FLVVIFRLTLSAFNALSDE DVLHLF
Sbjct: 121 FLVVIFRLTLSAFNALSDEDDVLHLF 146

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BLAST of Carg12732 vs. NCBI nr
Match: XP_022967917.1 (protein cornichon homolog 1-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 269.2 bits (687), Expect = 2.0e-68
Identity = 135/146 (92.47%), Postives = 144/146 (98.63%), Query Frame = 0


Query: 1   MAWSLIFWFVSFCINIALLVLNFYQLLVLTDLEADYLNIYDSSSRINKLVVPEFLVQGLF 60
           MAW+LIFWF+SFCIN+ALLVLNFYQLLVLTDLEADYLNIYDSSSRINKLV+PEFLVQG+F
Sbjct: 1   MAWNLIFWFISFCINVALLVLNFYQLLVLTDLEADYLNIYDSSSRINKLVIPEFLVQGVF 60

Query: 61  CSLFLFTGHWFMFLITVPVSCYHINLFLKREHLIDVTEVFKTLKREKYFRFAKLIFYLLL 120
           CSLFLFTGHWFMFLITVPVSCYHINLFLK+EHLIDVTEVF+TLKREKYFR AKLIFYLLL
Sbjct: 61  CSLFLFTGHWFMFLITVPVSCYHINLFLKKEHLIDVTEVFRTLKREKYFRLAKLIFYLLL 120

Query: 121 FLVVIFRLTLSAFNALSDEGDVLHLF 147
           FLVVIFRLTLSAFN+LSDE D+LHLF
Sbjct: 121 FLVVIFRLTLSAFNSLSDEDDILHLF 146

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BLAST of Carg12732 vs. NCBI nr
Match: XP_038883916.1 (protein cornichon homolog 1 isoform X2 [Benincasa hispida])

HSP 1 Score: 268.5 bits (685), Expect = 3.5e-68
Identity = 136/146 (93.15%), Postives = 142/146 (97.26%), Query Frame = 0


Query: 1   MAWSLIFWFVSFCINIALLVLNFYQLLVLTDLEADYLNIYDSSSRINKLVVPEFLVQGLF 60
           MAWSLIFWF+SFC NIALLVLNFYQLLVLTDLEADYLNIYDSSSRINKLV+PEFLVQG+F
Sbjct: 1   MAWSLIFWFISFCFNIALLVLNFYQLLVLTDLEADYLNIYDSSSRINKLVIPEFLVQGVF 60

Query: 61  CSLFLFTGHWFMFLITVPVSCYHINLFLKREHLIDVTEVFKTLKREKYFRFAKLIFYLLL 120
           CSLFLFTGHWFMFLITVPVSCYHINLFLKREHLIDVTEVF+ LKREKYFR AKLIFYLLL
Sbjct: 61  CSLFLFTGHWFMFLITVPVSCYHINLFLKREHLIDVTEVFRALKREKYFRLAKLIFYLLL 120

Query: 121 FLVVIFRLTLSAFNALSDEGDVLHLF 147
           FL+VIFRLTLSAFN+LSDE DVLHLF
Sbjct: 121 FLIVIFRLTLSAFNSLSDEDDVLHLF 146

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BLAST of Carg12732 vs. ExPASy Swiss-Prot
Match: Q9C7D7 (Protein cornichon homolog 1 OS=Arabidopsis thaliana OX=3702 GN=At3g12180 PE=2 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 6.0e-39
Identity = 80/146 (54.79%), Postives = 111/146 (76.03%), Query Frame = 0


Query: 1   MAWSLIFWFVSFCINIALLVLNFYQLLVLTDLEADYLNIYDSSSRINKLVVPEFLVQGLF 60
           MAW L  W VSF +++AL+   FYQ++ LTDLEADYLN +++S+RIN+LV+PEF++QG  
Sbjct: 1   MAWDLFLWIVSFFVSLALVASVFYQVICLTDLEADYLNPFETSTRINRLVIPEFILQGSL 60

Query: 61  CSLFLFTGHWFMFLITVPVSCYHINLFLKREHLIDVTEVFKTLKREKYFRFAKLIFYLLL 120
           C LFL T HW  FL+ VPV+ YH  L+ +R +LIDVTEVF+ +  EK  R+ KL FY+ L
Sbjct: 61  CLLFLLTWHWVFFLVAVPVTVYHAMLYKERRYLIDVTEVFRGISFEKKLRYTKLGFYVFL 120

Query: 121 FLVVIFRLTLSAFNALSDEGDVLHLF 147
           F++V+FRLTLSA  + +++ D+LHLF
Sbjct: 121 FIMVVFRLTLSAVYSFTEDDDLLHLF 146

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BLAST of Carg12732 vs. ExPASy Swiss-Prot
Match: Q84W04 (Protein cornichon homolog 4 OS=Arabidopsis thaliana OX=3702 GN=At1g12390 PE=1 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 7.6e-26
Identity = 63/131 (48.09%), Postives = 87/131 (66.41%), Query Frame = 0


Query: 8   WFVSFCINIALLVLNFYQLLVLTDLEADYLNIYDSSSRINKLVVPEFLVQGLFCSLFLFT 67
           W +SF   IAL+ +  YQL+ L DLE DY+N YDS+SRIN +V+PEF+VQG+ C  +L T
Sbjct: 7   WLISFFFLIALVGIIVYQLVCLADLEFDYINPYDSASRINSVVLPEFIVQGVLCVFYLLT 66

Query: 68  GHWFMFLITVPVSCYHINLFLKREHLIDVTEVFKTLKREKYFRFAKLIFYLLLFLVVIFR 127
           GHWFM L+ +P   Y+ +L+ KR+HL+DVTE+F  L  EK  R  KL + +L   + IF 
Sbjct: 67  GHWFMTLLCLPYLYYNFHLYSKRQHLVDVTEIFNLLNWEKKKRLFKLAYIVLNLFLTIFW 126

Query: 128 LTLSAFNALSD 139
           +  SA +   D
Sbjct: 127 MIYSALDDYED 137

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BLAST of Carg12732 vs. ExPASy Swiss-Prot
Match: Q8GWT5 (Protein cornichon homolog 3 OS=Arabidopsis thaliana OX=3702 GN=At1g62880 PE=2 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.9e-24
Identity = 63/131 (48.09%), Postives = 84/131 (64.12%), Query Frame = 0


Query: 8   WFVSFCINIALLVLNFYQLLVLTDLEADYLNIYDSSSRINKLVVPEFLVQGLFCSLFLFT 67
           W +SF I I LL L  YQL+ L DLE DY+N YDS+SRIN +V+PE ++QG  C  +L T
Sbjct: 7   WIISFLILITLLGLIVYQLISLADLEFDYINPYDSASRINFVVLPESILQGFLCVFYLVT 66

Query: 68  GHWFMFLITVPVSCYHINLFLKREHLIDVTEVFKTLKREKYFRFAKLIFYLLLFLVVIFR 127
           GHWFM L+ VP   Y+ +L+ +++HLIDVTE+F  L  EK  R  KL + +L   + IF 
Sbjct: 67  GHWFMALLCVPYLYYNFHLYSRKQHLIDVTEIFNLLDWEKKKRLFKLAYIILTLFLTIFW 126

Query: 128 LTLSAFNALSD 139
           L  S  +   D
Sbjct: 127 LIYSTLDDYED 137

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BLAST of Carg12732 vs. ExPASy Swiss-Prot
Match: Q3EDD7 (Probable protein cornichon homolog 2 OS=Arabidopsis thaliana OX=3702 GN=At1g12340 PE=2 SV=2)

HSP 1 Score: 107.5 bits (267), Expect = 1.3e-22
Identity = 56/120 (46.67%), Postives = 78/120 (65.00%), Query Frame = 0


Query: 19  LVLNFYQLLVLTDLEADYLNIYDSSSRINKLVVPEFLVQGLFCSLFLFTGHWFMFLITVP 78
           L    + L+ L DLE DY+N YDS+SRIN +V+PEF+VQG+ C  +L TGHWFM L+ +P
Sbjct: 10  LANGIFHLVCLADLEFDYINPYDSASRINSVVLPEFIVQGVLCVFYLLTGHWFMTLLCLP 69

Query: 79  VSCYHINLFLKREHLIDVTEVFKTLKREKYFRFAKLIFYLLLFLVVIFRLTLSAFNALSD 138
              Y+ +L+ KR+HL+DVTE+F  L  EK  R  KL + +L   + IF +  SA +   D
Sbjct: 70  YLYYNFHLYSKRQHLVDVTEIFNLLNWEKKKRLFKLAYIVLNLFLTIFWMIYSALDDYED 129

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BLAST of Carg12732 vs. ExPASy Swiss-Prot
Match: Q9SZ74 (Protein cornichon homolog 5 OS=Arabidopsis thaliana OX=3702 GN=At4g12090 PE=2 SV=2)

HSP 1 Score: 100.9 bits (250), Expect = 1.3e-20
Identity = 57/128 (44.53%), Postives = 82/128 (64.06%), Query Frame = 0


Query: 5   LIFWFVSFCINIALLVLNFYQLLVLTDLEADYLNIYDSSSRINKLVVPEFLVQGLFCSLF 64
           L+ W +SF     L+++  YQL  L DLE D +N YD SSRIN++V+PEF +QGL C  +
Sbjct: 4   LLDWIISFLFLATLIIIVIYQLTCLADLEFDRINPYDVSSRINRMVLPEFGLQGLLCLYY 63

Query: 65  LFTGHWFMFLITVPVSCYHINLFLKREHLIDVTEVFKTLKREKYFRFAKLIFYLLLFLVV 124
           + TGHWFM ++++P   Y+I L++KREHL DVTE++ T K E+  R  K+    L   + 
Sbjct: 64  ILTGHWFMAVLSLPHLFYNIRLYMKREHLADVTELYNTNKWEQKKRVYKIGHIALSIFIT 123

Query: 125 IFRLTLSA 133
            + L  SA
Sbjct: 124 TYWLIHSA 131

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BLAST of Carg12732 vs. ExPASy TrEMBL
Match: A0A6J1HTX3 (protein cornichon homolog 1-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111466123 PE=3 SV=1)

HSP 1 Score: 278.9 bits (712), Expect = 1.2e-71
Identity = 145/146 (99.32%), Postives = 145/146 (99.32%), Query Frame = 0


Query: 1   MAWSLIFWFVSFCINIALLVLNFYQLLVLTDLEADYLNIYDSSSRINKLVVPEFLVQGLF 60
           MAWSLIFWFVSFCINIALLVLNFYQLLVLTDLEADYLNIYDSSSRINKLVVPEFLVQGLF
Sbjct: 1   MAWSLIFWFVSFCINIALLVLNFYQLLVLTDLEADYLNIYDSSSRINKLVVPEFLVQGLF 60

Query: 61  CSLFLFTGHWFMFLITVPVSCYHINLFLKREHLIDVTEVFKTLKREKYFRFAKLIFYLLL 120
           CSLFLFTGHWFMFLITVPVSCYHINLFLKREHLIDVTEVFKTLKREKYFRFAKLIFYLLL
Sbjct: 61  CSLFLFTGHWFMFLITVPVSCYHINLFLKREHLIDVTEVFKTLKREKYFRFAKLIFYLLL 120

Query: 121 FLVVIFRLTLSAFNALSDEGDVLHLF 147
           FLVVIFRLTLSAFNALSDE DVLHLF
Sbjct: 121 FLVVIFRLTLSAFNALSDEDDVLHLF 146

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BLAST of Carg12732 vs. ExPASy TrEMBL
Match: A0A6J1EAS8 (protein cornichon homolog 1-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111432423 PE=3 SV=1)

HSP 1 Score: 278.9 bits (712), Expect = 1.2e-71
Identity = 145/146 (99.32%), Postives = 145/146 (99.32%), Query Frame = 0


Query: 1   MAWSLIFWFVSFCINIALLVLNFYQLLVLTDLEADYLNIYDSSSRINKLVVPEFLVQGLF 60
           MAWSLIFWFVSFCINIALLVLNFYQLLVLTDLEADYLNIYDSSSRINKLVVPEFLVQGLF
Sbjct: 1   MAWSLIFWFVSFCINIALLVLNFYQLLVLTDLEADYLNIYDSSSRINKLVVPEFLVQGLF 60

Query: 61  CSLFLFTGHWFMFLITVPVSCYHINLFLKREHLIDVTEVFKTLKREKYFRFAKLIFYLLL 120
           CSLFLFTGHWFMFLITVPVSCYHINLFLKREHLIDVTEVFKTLKREKYFRFAKLIFYLLL
Sbjct: 61  CSLFLFTGHWFMFLITVPVSCYHINLFLKREHLIDVTEVFKTLKREKYFRFAKLIFYLLL 120

Query: 121 FLVVIFRLTLSAFNALSDEGDVLHLF 147
           FLVVIFRLTLSAFNALSDE DVLHLF
Sbjct: 121 FLVVIFRLTLSAFNALSDEDDVLHLF 146

[Close]

BLAST of Carg12732 vs. ExPASy TrEMBL
Match: A0A6J1HS45 (protein cornichon homolog 1-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111467288 PE=3 SV=1)

HSP 1 Score: 269.2 bits (687), Expect = 9.8e-69
Identity = 135/146 (92.47%), Postives = 144/146 (98.63%), Query Frame = 0


Query: 1   MAWSLIFWFVSFCINIALLVLNFYQLLVLTDLEADYLNIYDSSSRINKLVVPEFLVQGLF 60
           MAW+LIFWF+SFCIN+ALLVLNFYQLLVLTDLEADYLNIYDSSSRINKLV+PEFLVQG+F
Sbjct: 1   MAWNLIFWFISFCINVALLVLNFYQLLVLTDLEADYLNIYDSSSRINKLVIPEFLVQGVF 60

Query: 61  CSLFLFTGHWFMFLITVPVSCYHINLFLKREHLIDVTEVFKTLKREKYFRFAKLIFYLLL 120
           CSLFLFTGHWFMFLITVPVSCYHINLFLK+EHLIDVTEVF+TLKREKYFR AKLIFYLLL
Sbjct: 61  CSLFLFTGHWFMFLITVPVSCYHINLFLKKEHLIDVTEVFRTLKREKYFRLAKLIFYLLL 120

Query: 121 FLVVIFRLTLSAFNALSDEGDVLHLF 147
           FLVVIFRLTLSAFN+LSDE D+LHLF
Sbjct: 121 FLVVIFRLTLSAFNSLSDEDDILHLF 146

[Close]

BLAST of Carg12732 vs. ExPASy TrEMBL
Match: A0A6J1EKZ6 (protein cornichon homolog 1-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111435524 PE=3 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 1.7e-68
Identity = 135/146 (92.47%), Postives = 144/146 (98.63%), Query Frame = 0


Query: 1   MAWSLIFWFVSFCINIALLVLNFYQLLVLTDLEADYLNIYDSSSRINKLVVPEFLVQGLF 60
           MAW+LIFWF+SFCIN+ALLVLNFYQLLVLTDLEADYLNIYDSSSRINKLV+PEF+VQG+F
Sbjct: 1   MAWNLIFWFISFCINVALLVLNFYQLLVLTDLEADYLNIYDSSSRINKLVIPEFVVQGVF 60

Query: 61  CSLFLFTGHWFMFLITVPVSCYHINLFLKREHLIDVTEVFKTLKREKYFRFAKLIFYLLL 120
           CSLFLFTGHWFMFLITVPVSCYHINLFLK+EHLIDVTEVF+TLKREKYFR AKLIFYLLL
Sbjct: 61  CSLFLFTGHWFMFLITVPVSCYHINLFLKKEHLIDVTEVFRTLKREKYFRLAKLIFYLLL 120

Query: 121 FLVVIFRLTLSAFNALSDEGDVLHLF 147
           FLVVIFRLTLSAFN+LSDE DVLHLF
Sbjct: 121 FLVVIFRLTLSAFNSLSDEDDVLHLF 146

[Close]

BLAST of Carg12732 vs. ExPASy TrEMBL
Match: A0A1S3B4V0 (protein cornichon homolog 1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103486176 PE=3 SV=1)

HSP 1 Score: 263.5 bits (672), Expect = 5.4e-67
Identity = 133/146 (91.10%), Postives = 142/146 (97.26%), Query Frame = 0


Query: 1   MAWSLIFWFVSFCINIALLVLNFYQLLVLTDLEADYLNIYDSSSRINKLVVPEFLVQGLF 60
           MAW+LIFWF+SFC NIALLVLNFYQLLVLTDLEADYLNIYDSSSRINKLV+PEFLVQG+F
Sbjct: 1   MAWNLIFWFISFCFNIALLVLNFYQLLVLTDLEADYLNIYDSSSRINKLVLPEFLVQGVF 60

Query: 61  CSLFLFTGHWFMFLITVPVSCYHINLFLKREHLIDVTEVFKTLKREKYFRFAKLIFYLLL 120
           CSLFLFTGHWFMFLITVPV+CYHINLFLKREHLIDVTEVF+ LKREKYFR AKLIFYLLL
Sbjct: 61  CSLFLFTGHWFMFLITVPVTCYHINLFLKREHLIDVTEVFRALKREKYFRLAKLIFYLLL 120

Query: 121 FLVVIFRLTLSAFNALSDEGDVLHLF 147
           FL+VIFRLTLSAFN+LSDE +VLHLF
Sbjct: 121 FLIVIFRLTLSAFNSLSDEDNVLHLF 146

[Close]

BLAST of Carg12732 vs. TAIR 10
Match: AT3G12180.1 (Cornichon family protein )

HSP 1 Score: 161.8 bits (408), Expect = 4.2e-40
Identity = 80/146 (54.79%), Postives = 111/146 (76.03%), Query Frame = 0


Query: 1   MAWSLIFWFVSFCINIALLVLNFYQLLVLTDLEADYLNIYDSSSRINKLVVPEFLVQGLF 60
           MAW L  W VSF +++AL+   FYQ++ LTDLEADYLN +++S+RIN+LV+PEF++QG  
Sbjct: 1   MAWDLFLWIVSFFVSLALVASVFYQVICLTDLEADYLNPFETSTRINRLVIPEFILQGSL 60

Query: 61  CSLFLFTGHWFMFLITVPVSCYHINLFLKREHLIDVTEVFKTLKREKYFRFAKLIFYLLL 120
           C LFL T HW  FL+ VPV+ YH  L+ +R +LIDVTEVF+ +  EK  R+ KL FY+ L
Sbjct: 61  CLLFLLTWHWVFFLVAVPVTVYHAMLYKERRYLIDVTEVFRGISFEKKLRYTKLGFYVFL 120

Query: 121 FLVVIFRLTLSAFNALSDEGDVLHLF 147
           F++V+FRLTLSA  + +++ D+LHLF
Sbjct: 121 FIMVVFRLTLSAVYSFTEDDDLLHLF 146

[Close]

BLAST of Carg12732 vs. TAIR 10
Match: AT1G12390.1 (Cornichon family protein )

HSP 1 Score: 118.2 bits (295), Expect = 5.4e-27
Identity = 63/131 (48.09%), Postives = 87/131 (66.41%), Query Frame = 0


Query: 8   WFVSFCINIALLVLNFYQLLVLTDLEADYLNIYDSSSRINKLVVPEFLVQGLFCSLFLFT 67
           W +SF   IAL+ +  YQL+ L DLE DY+N YDS+SRIN +V+PEF+VQG+ C  +L T
Sbjct: 7   WLISFFFLIALVGIIVYQLVCLADLEFDYINPYDSASRINSVVLPEFIVQGVLCVFYLLT 66

Query: 68  GHWFMFLITVPVSCYHINLFLKREHLIDVTEVFKTLKREKYFRFAKLIFYLLLFLVVIFR 127
           GHWFM L+ +P   Y+ +L+ KR+HL+DVTE+F  L  EK  R  KL + +L   + IF 
Sbjct: 67  GHWFMTLLCLPYLYYNFHLYSKRQHLVDVTEIFNLLNWEKKKRLFKLAYIVLNLFLTIFW 126

Query: 128 LTLSAFNALSD 139
           +  SA +   D
Sbjct: 127 MIYSALDDYED 137

[Close]

BLAST of Carg12732 vs. TAIR 10
Match: AT1G62880.1 (Cornichon family protein )

HSP 1 Score: 113.6 bits (283), Expect = 1.3e-25
Identity = 63/131 (48.09%), Postives = 84/131 (64.12%), Query Frame = 0


Query: 8   WFVSFCINIALLVLNFYQLLVLTDLEADYLNIYDSSSRINKLVVPEFLVQGLFCSLFLFT 67
           W +SF I I LL L  YQL+ L DLE DY+N YDS+SRIN +V+PE ++QG  C  +L T
Sbjct: 7   WIISFLILITLLGLIVYQLISLADLEFDYINPYDSASRINFVVLPESILQGFLCVFYLVT 66

Query: 68  GHWFMFLITVPVSCYHINLFLKREHLIDVTEVFKTLKREKYFRFAKLIFYLLLFLVVIFR 127
           GHWFM L+ VP   Y+ +L+ +++HLIDVTE+F  L  EK  R  KL + +L   + IF 
Sbjct: 67  GHWFMALLCVPYLYYNFHLYSRKQHLIDVTEIFNLLDWEKKKRLFKLAYIILTLFLTIFW 126

Query: 128 LTLSAFNALSD 139
           L  S  +   D
Sbjct: 127 LIYSTLDDYED 137

[Close]

BLAST of Carg12732 vs. TAIR 10
Match: AT1G12340.1 (Cornichon family protein )

HSP 1 Score: 107.5 bits (267), Expect = 9.5e-24
Identity = 56/120 (46.67%), Postives = 78/120 (65.00%), Query Frame = 0


Query: 19  LVLNFYQLLVLTDLEADYLNIYDSSSRINKLVVPEFLVQGLFCSLFLFTGHWFMFLITVP 78
           L    + L+ L DLE DY+N YDS+SRIN +V+PEF+VQG+ C  +L TGHWFM L+ +P
Sbjct: 10  LANGIFHLVCLADLEFDYINPYDSASRINSVVLPEFIVQGVLCVFYLLTGHWFMTLLCLP 69

Query: 79  VSCYHINLFLKREHLIDVTEVFKTLKREKYFRFAKLIFYLLLFLVVIFRLTLSAFNALSD 138
              Y+ +L+ KR+HL+DVTE+F  L  EK  R  KL + +L   + IF +  SA +   D
Sbjct: 70  YLYYNFHLYSKRQHLVDVTEIFNLLNWEKKKRLFKLAYIVLNLFLTIFWMIYSALDDYED 129

[Close]

BLAST of Carg12732 vs. TAIR 10
Match: AT4G12090.1 (Cornichon family protein )

HSP 1 Score: 100.9 bits (250), Expect = 8.9e-22
Identity = 57/128 (44.53%), Postives = 82/128 (64.06%), Query Frame = 0


Query: 5   LIFWFVSFCINIALLVLNFYQLLVLTDLEADYLNIYDSSSRINKLVVPEFLVQGLFCSLF 64
           L+ W +SF     L+++  YQL  L DLE D +N YD SSRIN++V+PEF +QGL C  +
Sbjct: 4   LLDWIISFLFLATLIIIVIYQLTCLADLEFDRINPYDVSSRINRMVLPEFGLQGLLCLYY 63

Query: 65  LFTGHWFMFLITVPVSCYHINLFLKREHLIDVTEVFKTLKREKYFRFAKLIFYLLLFLVV 124
           + TGHWFM ++++P   Y+I L++KREHL DVTE++ T K E+  R  K+    L   + 
Sbjct: 64  ILTGHWFMAVLSLPHLFYNIRLYMKREHLADVTELYNTNKWEQKKRVYKIGHIALSIFIT 123

Query: 125 IFRLTLSA 133
            + L  SA
Sbjct: 124 TYWLIHSA 131

The following BLAST results are available for this feature:

BLAST of Carg12732 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7027612.1	3.9e-72	100.00	Protein cornichon-like 1 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022925062.1	2.6e-71	99.32	protein cornichon homolog 1-like isoform X1 [Cucurbita moschata] >XP_022966479.1...	[more]
XP_023518963.1	7.4e-71	98.63	protein cornichon homolog 1-like isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_022967917.1	2.0e-68	92.47	protein cornichon homolog 1-like isoform X2 [Cucurbita maxima]	[more]
XP_038883916.1	3.5e-68	93.15	protein cornichon homolog 1 isoform X2 [Benincasa hispida]	[more]

BLAST of Carg12732 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C7D7	6.0e-39	54.79	Protein cornichon homolog 1 OS=Arabidopsis thaliana OX=3702 GN=At3g12180 PE=2 SV...	[more]
Q84W04	7.6e-26	48.09	Protein cornichon homolog 4 OS=Arabidopsis thaliana OX=3702 GN=At1g12390 PE=1 SV...	[more]
Q8GWT5	1.9e-24	48.09	Protein cornichon homolog 3 OS=Arabidopsis thaliana OX=3702 GN=At1g62880 PE=2 SV...	[more]
Q3EDD7	1.3e-22	46.67	Probable protein cornichon homolog 2 OS=Arabidopsis thaliana OX=3702 GN=At1g1234...	[more]
Q9SZ74	1.3e-20	44.53	Protein cornichon homolog 5 OS=Arabidopsis thaliana OX=3702 GN=At4g12090 PE=2 SV...	[more]

BLAST of Carg12732 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HTX3	1.2e-71	99.32	protein cornichon homolog 1-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A6J1EAS8	1.2e-71	99.32	protein cornichon homolog 1-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A6J1HS45	9.8e-69	92.47	protein cornichon homolog 1-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A6J1EKZ6	1.7e-68	92.47	protein cornichon homolog 1-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A1S3B4V0	5.4e-67	91.10	protein cornichon homolog 1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103486176 P...	[more]

BLAST of Carg12732 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G12180.1	4.2e-40	54.79	Cornichon family protein	[more]
AT1G12390.1	5.4e-27	48.09	Cornichon family protein	[more]
AT1G62880.1	1.3e-25	48.09	Cornichon family protein	[more]
AT1G12340.1	9.5e-24	46.67	Cornichon family protein	[more]
AT4G12090.1	8.9e-22	44.53	Cornichon family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003377	Cornichon	SMART	SM01398	Cornichon_2	coord: 5..126 e-value: 1.6E-51 score: 187.2
IPR003377	Cornichon	PFAM	PF03311	Cornichon	coord: 6..126 e-value: 2.0E-38 score: 131.4
None	No IPR available	PANTHER	PTHR12290:SF11	PROTEIN CORNICHON	coord: 1..129
None	No IPR available	PANTHER	PTHR12290	CORNICHON-RELATED	coord: 1..129

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg12732-RA	Carg12732-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016192	vesicle-mediated transport
cellular_component	GO:0016021	integral component of membrane