Carg12730 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg12730
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr07: 7790775 .. 7791536 (+)
RNA-Seq ExpressionCarg12730
SyntenyCarg12730
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GAGGTTGCAAGGAAACTGAGATGCGGTGCTGCTTCTTTCGTGAACTCTACTGACGGCAGCGGTTCGGATTTTCTTTTTCTGGAGGTTAATGTATTGAACGTGCTAGATCTCTTCTCTTTTTCTTTTGCAGCTTTATTCTTGTTTTTCTTTTCCTGTGTATATCTTGCACTGCTCTAGATGTGGTTCAGCAATTCGCATTCTGTTTTGAAAGAGTTTCGAGTTTTCTTTTGGAGTGTGGATGGTTTGTGTTCTTTAACCTTTTTCTTTTTTTGGTTCCGTGTGATGAATCGAGCGTTTCTGCTATGCAATGTGGGATGCTTTTTGTTTGAATATTTCATCTCTCTCTCTCTCTCTCTCTCTATTAAGGCTGTTTTTTTGTTTAGTTCTTGTTGGTATGGTCAGAGACCTGGATTGCGAGTTAAATCGTTGTAATTAAGTTGCCTAGGAGTTTCGGGATTACAGAGTATCGAATTCGTTCTATAATTGCTGTAACTCTGATTCTCTGGCACCTTTTAGATTTAAATTGAAGTTGATTTCTAGAAACACGATGGAGATTGACTGTTTGATTGCTATAATCGTGAAATGAATTCGGTGCTACCATTTCTGACTCTGAGATTACTATCGTTTAAGTACATTACGATGAACGACTGCTCATCTATTAATTTTGATTTTGTACATAACCCTGTCTAGGCAGAGATTAGAATTGTGATTCACTTTGATCTTTCCCTTTCCATTTTGCCTTCACGCATTTTCAGAGAGTGA

mRNA sequence

GAGGTTGCAAGGAAACTGAGATGCGGTGCTGCTTCTTTCGTGAACTCTACTGACGGCAGCGGTTCGGATTTTCTTTTTCTGGAGGCAGAGATTAGAATTGTGATTCACTTTGATCTTTCCCTTTCCATTTTGCCTTCACGCATTTTCAGAGAGTGA

Coding sequence (CDS)

GAGGTTGCAAGGAAACTGAGATGCGGTGCTGCTTCTTTCGTGAACTCTACTGACGGCAGCGGTTCGGATTTTCTTTTTCTGGAGGCAGAGATTAGAATTGTGATTCACTTTGATCTTTCCCTTTCCATTTTGCCTTCACGCATTTTCAGAGAGTGA

Protein sequence

EVARKLRCGAASFVNSTDGSGSDFLFLEAEIRIVIHFDLSLSILPSRIFRE
Homology
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BLAST of Carg12730 vs. NCBI nr
Match: KAG7027610.1 (hypothetical protein SDJN02_11624, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 101.7 bits (252), Expect = 2.0e-18
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 0 

Query: 1  EVARKLRCGAASFVNSTDGSGSDFLFLEAEIRIVIHFDLSLSILPSRIFRE 52
          EVARKLRCGAASFVNSTDGSGSDFLFLEAEIRIVIHFDLSLSILPSRIFRE
Sbjct: 1  EVARKLRCGAASFVNSTDGSGSDFLFLEAEIRIVIHFDLSLSILPSRIFRE 51

The following BLAST results are available for this feature:
BLAST of Carg12730 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7027610.12.0e-18100.00hypothetical protein SDJN02_11624, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg12730 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg12730 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg12730 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg12730-RACarg12730-RAmRNA