Carg12723 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg12723
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	RING/FYVE/PHD zinc finger superfamily protein, putative isoform 1
Location	Carg_Chr07: 7716350 .. 7716876 (+)
RNA-Seq Expression	Carg12723
Synteny	Carg12723

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTCAGCTGTTCTTCGCCGTCGCTTTCTCCGCAGTGCCATTGACGCTCTATGTGCCGCCAATTCGGAGCCTCAATTTGTTCGTCGAAACCCTAGAGGAACTTCTCCGTGACTCCGCCGCTCATACTCTCAGAGTTTATCCTCGTTTTCGCCAAGCCTTCTCTCGCCTCTTCGCCTCTATTTTCCGCGTTTCTAATTCCAGGTAGATTCGTTTCGATTCGATTCGGTTCTTTTTTTAATCTGAGCGACTTACCTGAGGCTTTTTGTTTCGCCGATTGCTGGTGTTGGTGGTGTTTGATTTGGAGATTCGATTGATTCGTGCTGTTGGATTAGGATCTTTAATCTTGAATGTTGAATCTCTCTTCACTCCTGTAGATTGAACTGTGATTTTTGTTTAGAAATCATTCGCGATGATGGATTTTCGTTTCGTTTCCTTTCGTTCTTCTCTGATTCTGTTTCCGATCTGTTTCGAGCTTTGGAATTTTCAAATTCTCTGTTTCCTCTCTGTTCTCGTGTAAGTAAGTGA

mRNA sequence

ATGCTTCAGCTGTTCTTCGCCGTCGCTTTCTCCGCAGTGCCATTGACGCTCTATGTGCCGCCAATTCGGAGCCTCAATTTGTTCGTCGAAACCCTAGAGGAACTTCTCCGTGACTCCGCCGCTCATACTCTCAGAGTTTATCCTCGTTTTCGCCAAGCCTTCTCTCGCCTCTTCGCCTCTATTTTCCGCGTTTCTAATTCCAGATTGAACTGTGATTTTTGTTTAGAAATCATTCGCGATGATGGATTTTCGTTTCGTTTCCTTTCGTTCTTCTCTGATTCTGTTTCCGATCTGTTTCGAGCTTTGGAATTTTCAAATTCTCTGTTTCCTCTCTGTTCTCGTGTAAGTAAGTGA

Coding sequence (CDS)

ATGCTTCAGCTGTTCTTCGCCGTCGCTTTCTCCGCAGTGCCATTGACGCTCTATGTGCCGCCAATTCGGAGCCTCAATTTGTTCGTCGAAACCCTAGAGGAACTTCTCCGTGACTCCGCCGCTCATACTCTCAGAGTTTATCCTCGTTTTCGCCAAGCCTTCTCTCGCCTCTTCGCCTCTATTTTCCGCGTTTCTAATTCCAGATTGAACTGTGATTTTTGTTTAGAAATCATTCGCGATGATGGATTTTCGTTTCGTTTCCTTTCGTTCTTCTCTGATTCTGTTTCCGATCTGTTTCGAGCTTTGGAATTTTCAAATTCTCTGTTTCCTCTCTGTTCTCGTGTAAGTAAGTGA

Protein sequence

MLQLFFAVAFSAVPLTLYVPPIRSLNLFVETLEELLRDSAAHTLRVYPRFRQAFSRLFASIFRVSNSRLNCDFCLEIIRDDGFSFRFLSFFSDSVSDLFRALEFSNSLFPLCSRVSK

Homology

[Close]

BLAST of Carg12723 vs. NCBI nr
Match: KAG6595630.1 (hypothetical protein SDJN03_12183, partial [Cucurbita argyrosperma subsp. sororia] >KAG7027603.1 hypothetical protein SDJN02_11617, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 226.1 bits (575), Expect = 1.6e-55
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 1   MLQLFFAVAFSAVPLTLYVPPIRSLNLFVETLEELLRDSAAHTLRVYPRFRQAFSRLFAS 60
           MLQLFFAVAFSAVPLTLYVPPIRSLNLFVETLEELLRDSAAHTLRVYPRFRQAFSRLFAS
Sbjct: 1   MLQLFFAVAFSAVPLTLYVPPIRSLNLFVETLEELLRDSAAHTLRVYPRFRQAFSRLFAS 60

Query: 61  IFRVSNSRLNCDFCLEIIRDDGFSFRFLSFFSDSVSDLFRALEFSNSLFPLCSRVSK 118
           IFRVSNSRLNCDFCLEIIRDDGFSFRFLSFFSDSVSDLFRALEFSNSLFPLCSRVSK
Sbjct: 61  IFRVSNSRLNCDFCLEIIRDDGFSFRFLSFFSDSVSDLFRALEFSNSLFPLCSRVSK 117

[Close]

BLAST of Carg12723 vs. NCBI nr
Match: KAE8649764.1 (hypothetical protein Csa_012384 [Cucumis sativus])

HSP 1 Score: 144.1 bits (362), Expect = 7.9e-31
Identity = 82/124 (66.13%), Postives = 92/124 (74.19%), Query Frame = 0


Query: 1   MLQLFFAVAFSAVPLTLYVPPIRSLNLFVETLEELLRDSAAHTLRVYPRFRQAFSRLFAS 60
           MLQLFFAVAFSAVPLTLYVPPIRSL+LFVETLE+LL  +A HT+R YPRFR AFSRLFAS
Sbjct: 1   MLQLFFAVAFSAVPLTLYVPPIRSLSLFVETLEDLLHHTAIHTIRAYPRFRLAFSRLFAS 60

Query: 61  IFRVSNSR---------------LNCDFCLEIIRDDGFSFRFLSFFSDSVSDLFRALEFS 110
           +FRVS SR               +   F   II DDGFSFRF+SFF DSVSDL +AL+  
Sbjct: 61  VFRVSYSRNLGSWILDILSSLLYMEVIFLFGIISDDGFSFRFVSFFFDSVSDLLKALDCL 120

[Close]

BLAST of Carg12723 vs. NCBI nr
Match: KAA0060071.1 (RING/FYVE/PHD zinc finger superfamily protein, putative isoform 1 [Cucumis melo var. makuwa] >TYK29882.1 RING/FYVE/PHD zinc finger superfamily protein, putative isoform 1 [Cucumis melo var. makuwa])

HSP 1 Score: 109.4 bits (272), Expect = 2.1e-20
Identity = 57/68 (83.82%), Postives = 61/68 (89.71%), Query Frame = 0


Query: 1  MLQLFFAVAFSAVPLTLYVPPIRSLNLFVETLEELLRDSAAHTLRVYPRFRQAFSRLFAS 60
          MLQLFFAVAFSAVPLTLYVPPIRSL+LFVETLE+LL  +A HT+R YPRFR AFSRLFAS
Sbjct: 1  MLQLFFAVAFSAVPLTLYVPPIRSLSLFVETLEDLLHHTAIHTIRAYPRFRLAFSRLFAS 60

Query: 61 IFRVSNSR 69
           FRVS SR
Sbjct: 61 FFRVSYSR 68

[Close]

BLAST of Carg12723 vs. NCBI nr
Match: KAG6603254.1 (hypothetical protein SDJN03_03863, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 105.5 bits (262), Expect = 3.1e-19
Identity = 54/68 (79.41%), Postives = 58/68 (85.29%), Query Frame = 0


Query: 1  MLQLFFAVAFSAVPLTLYVPPIRSLNLFVETLEELLRDSAAHTLRVYPRFRQAFSRLFAS 60
          MLQLFFAVAFSA PLT YVPPIRSLNLFVETLE+L R +A HT R YPRFR AFSR+F S
Sbjct: 1  MLQLFFAVAFSAAPLTFYVPPIRSLNLFVETLEDLFRHTATHTHRAYPRFRLAFSRVFGS 60

Query: 61 IFRVSNSR 69
          +FRVS SR
Sbjct: 61 VFRVSYSR 68

[Close]

BLAST of Carg12723 vs. NCBI nr
Match: KAG7037385.1 (hypothetical protein SDJN02_01010, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 105.5 bits (262), Expect = 3.1e-19
Identity = 54/68 (79.41%), Postives = 58/68 (85.29%), Query Frame = 0


Query: 1  MLQLFFAVAFSAVPLTLYVPPIRSLNLFVETLEELLRDSAAHTLRVYPRFRQAFSRLFAS 60
          MLQLFFAVAFSA PLT YVPPIRSLNLFVETLE+L R +A HT R YPRFR AFSR+F S
Sbjct: 1  MLQLFFAVAFSAAPLTFYVPPIRSLNLFVETLEDLFRHTATHTHRAYPRFRLAFSRVFGS 60

Query: 61 IFRVSNSR 69
          +FRVS SR
Sbjct: 61 VFRVSYSR 68

[Close]

BLAST of Carg12723 vs. ExPASy TrEMBL
Match: A0A0A0KZF7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G569720 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 3.8e-31
Identity = 82/124 (66.13%), Postives = 92/124 (74.19%), Query Frame = 0


Query: 1   MLQLFFAVAFSAVPLTLYVPPIRSLNLFVETLEELLRDSAAHTLRVYPRFRQAFSRLFAS 60
           MLQLFFAVAFSAVPLTLYVPPIRSL+LFVETLE+LL  +A HT+R YPRFR AFSRLFAS
Sbjct: 1   MLQLFFAVAFSAVPLTLYVPPIRSLSLFVETLEDLLHHTAIHTIRAYPRFRLAFSRLFAS 60

Query: 61  IFRVSNSR---------------LNCDFCLEIIRDDGFSFRFLSFFSDSVSDLFRALEFS 110
           +FRVS SR               +   F   II DDGFSFRF+SFF DSVSDL +AL+  
Sbjct: 61  VFRVSYSRNLGSWILDILSSLLYMEVIFLFGIISDDGFSFRFVSFFFDSVSDLLKALDCL 120

[Close]

BLAST of Carg12723 vs. ExPASy TrEMBL
Match: A0A5A7V2T5 (RING/FYVE/PHD zinc finger superfamily protein, putative isoform 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold208G001360 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 1.0e-20
Identity = 57/68 (83.82%), Postives = 61/68 (89.71%), Query Frame = 0


Query: 1  MLQLFFAVAFSAVPLTLYVPPIRSLNLFVETLEELLRDSAAHTLRVYPRFRQAFSRLFAS 60
          MLQLFFAVAFSAVPLTLYVPPIRSL+LFVETLE+LL  +A HT+R YPRFR AFSRLFAS
Sbjct: 1  MLQLFFAVAFSAVPLTLYVPPIRSLSLFVETLEDLLHHTAIHTIRAYPRFRLAFSRLFAS 60

Query: 61 IFRVSNSR 69
           FRVS SR
Sbjct: 61 FFRVSYSR 68

[Close]

BLAST of Carg12723 vs. ExPASy TrEMBL
Match: B9SL52 (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0089370 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 2.8e-18
Identity = 49/66 (74.24%), Postives = 61/66 (92.42%), Query Frame = 0


Query: 1  MLQLFFAVAFSAVPLTLYVPPIRSLNLFVETLEELLRDSAAHTLRVYPRFRQAFSRLFAS 60
          MLQ+FFAVAFSAVPLTLYVPPIRSLNLF+ET+EELLR S ++T++ YPR R AFSRLF++
Sbjct: 1  MLQIFFAVAFSAVPLTLYVPPIRSLNLFLETIEELLRQSTSYTIQAYPRIRLAFSRLFSN 60

Query: 61 IFRVSN 67
          +FR+S+
Sbjct: 61 LFRLSS 66

[Close]

BLAST of Carg12723 vs. ExPASy TrEMBL
Match: A0A2C9V7E1 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_09G026700 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 4.8e-18
Identity = 50/65 (76.92%), Postives = 60/65 (92.31%), Query Frame = 0


Query: 1  MLQLFFAVAFSAVPLTLYVPPIRSLNLFVETLEELLRDSAAHTLRVYPRFRQAFSRLFAS 60
          MLQLFFAVAFSAVPLTLYVPPIRSLN FVET+E+LLR +A ++LR YPRFR AFSR+F++
Sbjct: 1  MLQLFFAVAFSAVPLTLYVPPIRSLNPFVETIEDLLRQTAFYSLRAYPRFRLAFSRIFSN 60

Query: 61 IFRVS 66
          +FR+S
Sbjct: 61 LFRLS 65

[Close]

BLAST of Carg12723 vs. ExPASy TrEMBL
Match: A0A6P6AMB2 (uncharacterized protein LOC111310902 isoform X1 OS=Durio zibethinus OX=66656 GN=LOC111310902 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 1.4e-17
Identity = 49/66 (74.24%), Postives = 57/66 (86.36%), Query Frame = 0


Query: 1  MLQLFFAVAFSAVPLTLYVPPIRSLNLFVETLEELLRDSAAHTLRVYPRFRQAFSRLFAS 60
          MLQLFFAVAFSAVPLTLYVPPIRSLNLFVET+E++LR +  +TLR YPR R  FSR+F S
Sbjct: 1  MLQLFFAVAFSAVPLTLYVPPIRSLNLFVETIEDMLRQTTLYTLRAYPRIRLGFSRIFGS 60

Query: 61 IFRVSN 67
          IF +S+
Sbjct: 61 IFHLSS 66

[Close]

BLAST of Carg12723 vs. TAIR 10
Match: AT3G52105.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 71.6 bits (174), Expect = 4.6e-13
Identity = 36/65 (55.38%), Postives = 47/65 (72.31%), Query Frame = 0


Query: 1  MLQLFFAVAFSAVPLTLYVPPIRSLNLFVETLEELLRDSAAHTLRVYPRFRQAFSRLFAS 60
          MLQLFF +AFSA PLTLY+PPIR L +FVET+EE+  +   ++ R++PR R A+SRL   
Sbjct: 1  MLQLFFTIAFSAAPLTLYIPPIRCLTVFVETMEEMGMEGRVYSWRLFPRARIAWSRLLDC 60

Query: 61 IFRVS 66
           F  S
Sbjct: 61 FFSSS 65

The following BLAST results are available for this feature:

BLAST of Carg12723 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6595630.1	1.6e-55	100.00	hypothetical protein SDJN03_12183, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAE8649764.1	7.9e-31	66.13	hypothetical protein Csa_012384 [Cucumis sativus]	[more]
KAA0060071.1	2.1e-20	83.82	RING/FYVE/PHD zinc finger superfamily protein, putative isoform 1 [Cucumis melo ...	[more]
KAG6603254.1	3.1e-19	79.41	hypothetical protein SDJN03_03863, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7037385.1	3.1e-19	79.41	hypothetical protein SDJN02_01010, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Carg12723 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg12723 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KZF7	3.8e-31	66.13	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G569720 PE=4 SV=1	[more]
A0A5A7V2T5	1.0e-20	83.82	RING/FYVE/PHD zinc finger superfamily protein, putative isoform 1 OS=Cucumis mel...	[more]
B9SL52	2.8e-18	74.24	Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0089370 PE=4 SV=1	[more]
A0A2C9V7E1	4.8e-18	76.92	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_09G026700 PE=4 SV=...	[more]
A0A6P6AMB2	1.4e-17	74.24	uncharacterized protein LOC111310902 isoform X1 OS=Durio zibethinus OX=66656 GN=...	[more]

BLAST of Carg12723 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G52105.1	4.6e-13	55.38	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36616:SF5	DIS3-EXONUCLEASE-LIKE PROTEIN	coord: 1..66
None	No IPR available	PANTHER	PTHR36616	BNAC07G32700D PROTEIN	coord: 1..66

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg12723-RA	Carg12723-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane