Carg12714 (gene) Silver-seed gourd (SMH-JMG-627) v2
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Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.CAAGACTTAAAACTGCAATCAGAGGGCCATTGCTCGCCAAATGGCTAAGGAATCAACGGAACTTGCTGAGGAGGATGAACGCCTGGAACTCATGGAGTTCGCTCTGTCCAGCAAGGGATTACCGTCAATAATGTCTCTTCATCACGAAACTTTACAATATCTGGAGTTATTTAAAAGGTTCGTGTTTCTATTAACTTCCTTTTTGTTTAAATTCGTTGAGTATCAAGAATGTTCTTCCCTTGCACCAAGTGACCTAGAATAACCTGTTTACCTATTTACACGTGATTACTTGTGGACTTTAATTTATGTGTTCTATTTGTTTTAATTCTTTTAGCATGGATTGAGAGTGGAAATTAAGTTACTGTACCTTTTTTTAAATTATTTTGTTTTCTATTTTGAAGTTCACTTACTTTAGAAAATTGACATGAAGATTCTGAACGACATGAAGAAACTGTTCAGTGTAGGACATTATCTATTATATGAATGTCGAACTGTTATGTGTATTTCTAGGCGTGGAAGTTCTTCTAACTGTTATTGTCTTAAAATTTTCTTTATCTGTAACCTGACTTTTGAATCTGCCTTGTAACGCAGGAGTATATTGTAATGTGCTATGATATATAAATGTTTGCTCTGTCGTTCATGTCTTAGTCTTTTGGAAAATAACTATCACCATGTCAACCTCCCTGTTGGTTGGATCGGTCTAGACAAAACTGTTCATTCTCTGGAAAACATGACCATATAAAGAACAAGCTTTCACAGAGATACGATATATTGTTAGTCTAAATCAGTGGAATATCTAATTGTATGAAATAACCAAAATTTTCCTGCTAACATTCAAGTAATATCTAATTGTATTCTGCTTCTTTTATTAGTTAAGTGATTTACTTCCCCAAAATGTATATCTATATAGTTTGAGAGAATTAGACAAAAGGAAGCACTGTGCAGGAAAAGATAAGTAGCAAGACTTAAAACTGCAATCAGAGGGCCATTGCTCGCCAAATGGCTAAGGAATCAACGGAACTTGCTGAGGAGGATGAACGCCTGGAACTCATGGAGTTCGCTCTGTCCAGCAAGGGATTACCGTCAATAATGTCTCTTCATCACGAAACTTTACAATATCTGGAGTTATTTAAAAGTTTGAGAGAATTAGACAAAAGGAAGCACTGTGCAGGAAAAGATAAGTAG ATGGCTAAGGAATCAACGGAACTTGCTGAGGAGGATGAACGCCTGGAACTCATGGAGTTCGCTCTGTCCAGCAAGGGATTACCGTCAATAATGTCTCTTCATCACGAAACTTTACAATATCTGGAGTTATTTAAAAGTTTGAGAGAATTAGACAAAAGGAAGCACTGTGCAGGAAAAGATAAGTAG MAKESTELAEEDERLELMEFALSSKGLPSIMSLHHETLQYLELFKSLRELDKRKHCAGKDK Homology
BLAST of Carg12714 vs. NCBI nr
Match: KAG7027595.1 (Homeobox-DDT domain protein RLT1 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 119.4 bits (298), Expect = 1.1e-23 Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0
BLAST of Carg12714 vs. NCBI nr
Match: XP_023554340.1 (homeobox-DDT domain protein RLT2-like isoform X1 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 68.9 bits (167), Expect = 1.7e-08 Identity = 39/48 (81.25%), Postives = 42/48 (87.50%), Query Frame = 0
BLAST of Carg12714 vs. NCBI nr
Match: XP_023554342.1 (homeobox-DDT domain protein RLT2-like isoform X3 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 68.9 bits (167), Expect = 1.7e-08 Identity = 39/48 (81.25%), Postives = 42/48 (87.50%), Query Frame = 0
BLAST of Carg12714 vs. NCBI nr
Match: XP_022952972.1 (homeobox-DDT domain protein RLT2-like isoform X3 [Cucurbita moschata]) HSP 1 Score: 68.9 bits (167), Expect = 1.7e-08 Identity = 39/48 (81.25%), Postives = 42/48 (87.50%), Query Frame = 0
BLAST of Carg12714 vs. NCBI nr
Match: KAG6572264.1 (Homeobox-DDT domain protein RLT2, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 68.9 bits (167), Expect = 1.7e-08 Identity = 39/48 (81.25%), Postives = 42/48 (87.50%), Query Frame = 0
BLAST of Carg12714 vs. ExPASy Swiss-Prot
Match: F4HY56 (Homeobox-DDT domain protein RLT1 OS=Arabidopsis thaliana OX=3702 GN=RLT1 PE=1 SV=1) HSP 1 Score: 51.2 bits (121), Expect = 4.7e-06 Identity = 27/45 (60.00%), Postives = 36/45 (80.00%), Query Frame = 0
BLAST of Carg12714 vs. ExPASy Swiss-Prot
Match: Q9FFH1 (Homeobox-DDT domain protein RLT2 OS=Arabidopsis thaliana OX=3702 GN=RLT2 PE=1 SV=1) HSP 1 Score: 47.0 bits (110), Expect = 9.0e-05 Identity = 27/45 (60.00%), Postives = 35/45 (77.78%), Query Frame = 0
BLAST of Carg12714 vs. ExPASy TrEMBL
Match: A0A6J1HZH7 (LOW QUALITY PROTEIN: homeobox-DDT domain protein RLT2-like OS=Cucurbita maxima OX=3661 GN=LOC111468095 PE=4 SV=1) HSP 1 Score: 68.9 bits (167), Expect = 8.1e-09 Identity = 39/48 (81.25%), Postives = 42/48 (87.50%), Query Frame = 0
BLAST of Carg12714 vs. ExPASy TrEMBL
Match: A0A6J1GLW4 (homeobox-DDT domain protein RLT2-like isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111455486 PE=4 SV=1) HSP 1 Score: 68.9 bits (167), Expect = 8.1e-09 Identity = 39/48 (81.25%), Postives = 42/48 (87.50%), Query Frame = 0
BLAST of Carg12714 vs. ExPASy TrEMBL
Match: A0A6J1GND4 (homeobox-DDT domain protein RLT2-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111455486 PE=4 SV=1) HSP 1 Score: 68.9 bits (167), Expect = 8.1e-09 Identity = 39/48 (81.25%), Postives = 42/48 (87.50%), Query Frame = 0
BLAST of Carg12714 vs. ExPASy TrEMBL
Match: A0A6J1GLQ4 (homeobox-DDT domain protein RLT2-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111455486 PE=4 SV=1) HSP 1 Score: 68.9 bits (167), Expect = 8.1e-09 Identity = 39/48 (81.25%), Postives = 42/48 (87.50%), Query Frame = 0
BLAST of Carg12714 vs. ExPASy TrEMBL
Match: A0A6J1C2D2 (homeobox-DDT domain protein RLT2 isoform X4 OS=Momordica charantia OX=3673 GN=LOC111007640 PE=4 SV=1) HSP 1 Score: 66.2 bits (160), Expect = 5.3e-08 Identity = 37/48 (77.08%), Postives = 42/48 (87.50%), Query Frame = 0
BLAST of Carg12714 vs. TAIR 10
Match: AT1G28420.1 (homeobox-1 ) HSP 1 Score: 51.2 bits (121), Expect = 3.4e-07 Identity = 27/45 (60.00%), Postives = 36/45 (80.00%), Query Frame = 0
BLAST of Carg12714 vs. TAIR 10
Match: AT5G44180.1 (Homeodomain-like transcriptional regulator ) HSP 1 Score: 47.0 bits (110), Expect = 6.4e-06 Identity = 27/45 (60.00%), Postives = 35/45 (77.78%), Query Frame = 0
BLAST of Carg12714 vs. TAIR 10
Match: AT5G44180.2 (Homeodomain-like transcriptional regulator ) HSP 1 Score: 47.0 bits (110), Expect = 6.4e-06 Identity = 27/45 (60.00%), Postives = 35/45 (77.78%), Query Frame = 0
The following BLAST results are available for this feature:
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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