Carg12704 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg12704
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	60S ribosomal protein L35a-1-like
Location	Carg_Chr07: 7547821 .. 7550656 (+)
RNA-Seq Expression	Carg12704
Synteny	Carg12704

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATCATTTTGGCCCTCAACCTCCACTATAAAAGCTTCCTCTTCTACTGGCGCTCGCCTTCTCCGCCGAACACAGCTCCATCTTCCGCACTTCAACCTCCAAATCGAAGGTGATTATTCCTCTAAGATTTCCTTTTTTTTTCCTTCTCCACAGCATTTACATTTGACTACGGATCTCAATTCTTAGTTTCTTGCCTTGCAGTGGTCGTTTTCTTGAACCTTAGACTGCGGCAGCCATGGTGAAGGGAAGCAAGGGAGAAAGAGTCAGGTCTCTTTCCTGAGCCCTAGATCGACCTGTTTTGATTGTTTGATTTTATTTGTTCTTCACAATGCTGTGCTAATCTTTTGTGTTTGTTTCAGACTCTACGTCAGAGGAACTGTCCTTGGCTACAAGAGGTAATTGGTTTTTCTTTGATAATGGAATAATCGTTATCTTTTAGTGATGCGTAGTATGTGATTGGAAAACAGAAAATGGTGCAATAGAGTACTCTTTAATGTGGTGCGATGCCGAGAAAATGAACGAAACTGGAATTGAAATATGCGTTAGGTTTAGTTGTAAGTTACTGAGGGATGTTGTAGTTTGTGAGGGAGCTAAGAATGTGCGGTTGGTGTTTAGGTCGAAGTCAAACCAGTATCCAAGAACATCACTGATCCAGATTGAAGGTGTGAATACCAAGGAAGAGGTCGCGTGGTATGCTGGAAAACGCTTGGCATACATTTACAAGGCCAAAGTGAAGCAAAATGGAACTCACTATCGATGCATTTGGGGCAAAGTATCCAGGGCTCATGGTAACAGTGGCATTGTTCGAGCTAAGTTCAAGTCAAACTTGCCCCCAAAATCCATGGTAAAATGGAATGATTTTGCTGTTACTTCATATACTTTCAAGGATTGTAAATTGGGGATGTGTTTTCTGATTGAATTACTGGACAATTTTGCAGGGTGATAAAGTTAGGGTATTTATGTACCCCAGCAATATTTGAGGTACACACCCGGCTTCCATTGTTTTAGTCTTTAAAATTGTTAGTTACCATTTGCATTTAGTGTTGTATGAAGGAAAAAATCATCCATGCTGTTCATCTTAATCATGTGATAATAACACAGCATAACTTGATATTGCATACTTCGTTGCTATTCATTTCCGACATTCAATTTTTGTTTGCACTGTTAATAGTTCGATTGTGACATAATCCTGTGATCATTGTGTCACTTTAATTTGTACTTCATTAACTTGCTGGACTATGTTCCTCAATCTTCGTTTTTCTTTTCTGTTGTTGGATGTTGTCATCTACCTTTGTCTGTTTATTCCAAAATGATTATATGTGGTTTGTTCTGACTCCTCAATCTCCAAATGGAGCATCATATTGCAATCAGAAATTCGTGAGGCATCTTTATGCGTTCTTCCCATAGTGTAGTGCTTCTTTTTTTATAGAGTTGAAGTACTTTGATGTAGAATGTTTTAAGAATGAAGTTTGTTTCAATTTTGAACTAAAAAAAATGTTTGTTTTAATTTTTATGTTCATCATGTTTTCAACTTCTATGTTTTTATCCAATATTCTATCCTGTTACATAGAGTAGGCTCGGGTCGAACATTCTTTTGGAATCCATTCCATCAATCAATAAAATAGATACTCAATGTCTTTGTATAAACGAGACACTCTATCACATTTGGTCCTCACTGTAGGAATCCTAGTTTTACTTCCAGACCGATGTATAAGTTTTTTTGTGAGTCCATTTCCTCACAATTCACTTATTCCAGTCCCACCACTTACAGATCAGATGTCTTTCACTCATCTATTAGTACCTTTGTAGCCCTGGTTCTATCCACCTTTGTGTCTCCTACAGTTCTAAGTTGCACTTCATATGAACTGTTCGAAGCCAGATTCGATTCTCAGTTGTCTTGGATCAATCTATAGCTTTGTCTACTCATTTCTTGAATAATAACTTTATCTTTTATTTTTCCTCCCACGCATATCTTTCAACATCACGAATCAAGCTGTCCATGAAATGTAGATTCATTTCCCGTACTGATTTTAGTTCATTTGCGTAATTGTCTGTGTCGTGTTCGATCCATATTAGAAATCCGTTTGTGCATTTAGTCACGTCTTCTCTTCAACGCATTTATCTATGATGATTTTGAAACCCCGTTTCTGATATCTCTCCTTTTGTTTTATATTTTGTTTGCAGTTCCTCTGATGAGCTAGCTAGAGGTCAGGTTTCATTTCTTTGTGGACTTGGATGGAACAATATTTTTCTTTTACTTTCTTCCTTCTGGACCCAATGTTTAGGTGATGATGTTTTCATGTAAAACTTGACTAAATTTTCGACGTTCATTATGGAATATTACTTTCAATTTTGACCGAGCTTCATATTAAGGTTGAGTTAAAATGGTAGTCACTTAAATTTAGACGGATATTTGTTGATGCGTTTAATATTTTGGTCTATATTGTTATCTCTACAAATAATACGGACTCGTAAAAGAAGAAAAAAAGCATTCATATTAACTTTTAATATTTTTATTTATGAAATATTTAATTATATAGTTTTTTTAAAGGTTGACAGTTAGTAAACCAGTAAACCATGTCTGTGATTGTCGCTTTGTTCTCCTCTTATTCTTTGTTGGACGGTTTGATGGACTCGATCCGTCCTCCGTCTCGAATGAGATAGGGAATTAGTAATTCCCTATTTCGACTTGACTTGTGTTGCTCTAATCAGTAATTCTCATGTCTGTCGAGACTCGCTTTGTTCTCCTCTTATTCTTTGTTGGACGGTTTGACTTGTGTTGCTCTCATTATTCTATTTTCTGTCTCCCTCATTCTCGTTAGTTTTTTTTTTTTTT

mRNA sequence

AAATCATTTTGGCCCTCAACCTCCACTATAAAAGCTTCCTCTTCTACTGGCGCTCGCCTTCTCCGCCGAACACAGCTCCATCTTCCGCACTTCAACCTCCAAATCGAAGTGGTCGTTTTCTTGAACCTTAGACTGCGGCAGCCATGGTGAAGGGAAGCAAGGGAGAAAGAGTCAGACTCTACGTCAGAGGAACTGTCCTTGGCTACAAGAGGTCGAAGTCAAACCAGTATCCAAGAACATCACTGATCCAGATTGAAGGTGTGAATACCAAGGAAGAGGTCGCGTGGTATGCTGGAAAACGCTTGGCATACATTTACAAGGCCAAAGTGAAGCAAAATGGAACTCACTATCGATGCATTTGGGGCAAAGTATCCAGGGCTCATGGTAACAGTGGCATTGTTCGAGCTAAGTTCAAGTCAAACTTGCCCCCAAAATCCATGGGTGATAAAGTTAGGGTATTTATGTACCCCAGCAATATTTGAGTTCCTCTGATGAGCTAGCTAGAGGTCAGGTTTCATTTCTTTGTGGACTTGGATGGAACAATATTTTTCTTTTACTTTCTTCCTTCTGGACCCAATGTTTAGGTGATGATGTTTTCATGTAAAACTTGACTAAATTTTCGACGTTCATTATGGAATATTACTTTCAATTTTGACCGAGCTTCATATTAAGGTTGAGTTAAAATGGTAGTCACTTAAATTTAGACGGATATTTGTTGATGCGTTTAATATTTTGGTCTATATTGTTATCTCTACAAATAATACGGACTCGTAAAAGAAGAAAAAAAGCATTCATATTAACTTTTAATATTTTTATTTATGAAATATTTAATTATATAGTTTTTTTAAAGGTTGACAGTTAGTAAACCAGTAAACCATGTCTGTGATTGTCGCTTTGTTCTCCTCTTATTCTTTGTTGGACGGTTTGACTTGTGTTGCTCTCATTATTCTATTTTCTGTCTCCCTCATTCTCGTTAGTTTTTTTTTTTTTT

Coding sequence (CDS)

ATGGTGAAGGGAAGCAAGGGAGAAAGAGTCAGACTCTACGTCAGAGGAACTGTCCTTGGCTACAAGAGGTCGAAGTCAAACCAGTATCCAAGAACATCACTGATCCAGATTGAAGGTGTGAATACCAAGGAAGAGGTCGCGTGGTATGCTGGAAAACGCTTGGCATACATTTACAAGGCCAAAGTGAAGCAAAATGGAACTCACTATCGATGCATTTGGGGCAAAGTATCCAGGGCTCATGGTAACAGTGGCATTGTTCGAGCTAAGTTCAAGTCAAACTTGCCCCCAAAATCCATGGGTGATAAAGTTAGGGTATTTATGTACCCCAGCAATATTTGA

Protein sequence

MVKGSKGERVRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTKEEVAWYAGKRLAYIYKAKVKQNGTHYRCIWGKVSRAHGNSGIVRAKFKSNLPPKSMGDKVRVFMYPSNI

Homology

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BLAST of Carg12704 vs. NCBI nr
Match: XP_022925254.1 (60S ribosomal protein L35a-1-like [Cucurbita moschata] >XP_022925256.1 60S ribosomal protein L35a-1-like [Cucurbita moschata] >XP_022966497.1 60S ribosomal protein L35a-1-like [Cucurbita maxima] >XP_022966498.1 60S ribosomal protein L35a-1-like [Cucurbita maxima] >XP_023518922.1 60S ribosomal protein L35a-1-like [Cucurbita pepo subsp. pepo] >KAG7027585.1 60S ribosomal protein L35a-1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 231.1 bits (588), Expect = 4.7e-57
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0


Query: 1   MVKGSKGERVRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTKEEVAWYAGKRLAYIYKA 60
           MVKGSKGERVRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTKEEVAWYAGKRLAYIYKA
Sbjct: 1   MVKGSKGERVRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTKEEVAWYAGKRLAYIYKA 60

Query: 61  KVKQNGTHYRCIWGKVSRAHGNSGIVRAKFKSNLPPKSMGDKVRVFMYPSNI 113
           KVKQNGTHYRCIWGKVSRAHGNSGIVRAKFKSNLPPKSMGDKVRVFMYPSNI
Sbjct: 61  KVKQNGTHYRCIWGKVSRAHGNSGIVRAKFKSNLPPKSMGDKVRVFMYPSNI 112

[Close]

BLAST of Carg12704 vs. NCBI nr
Match: XP_022928725.1 (60S ribosomal protein L35a-1-like [Cucurbita moschata] >XP_022928726.1 60S ribosomal protein L35a-1-like [Cucurbita moschata] >XP_022928728.1 60S ribosomal protein L35a-1-like [Cucurbita moschata] >XP_023522925.1 60S ribosomal protein L35a-1-like [Cucurbita pepo subsp. pepo] >XP_023543608.1 60S ribosomal protein L35a-1-like [Cucurbita pepo subsp. pepo] >XP_023543609.1 60S ribosomal protein L35a-1-like [Cucurbita pepo subsp. pepo] >XP_023543610.1 60S ribosomal protein L35a-1-like [Cucurbita pepo subsp. pepo] >KAG7033574.1 60S ribosomal protein L35a-1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 226.9 bits (577), Expect = 8.8e-56
Identity = 108/112 (96.43%), Postives = 111/112 (99.11%), Query Frame = 0


Query: 1   MVKGSKGERVRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTKEEVAWYAGKRLAYIYKA 60
           MVKGS+GER+RLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTKEEVAWYAGKRLAYIYKA
Sbjct: 1   MVKGSQGERIRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTKEEVAWYAGKRLAYIYKA 60

Query: 61  KVKQNGTHYRCIWGKVSRAHGNSGIVRAKFKSNLPPKSMGDKVRVFMYPSNI 113
           KVKQNGTHYRCIWGKVSR HGNSGIVRAKFKSNLPPKSMGDK+RVFMYPSNI
Sbjct: 61  KVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMGDKIRVFMYPSNI 112

[Close]

BLAST of Carg12704 vs. NCBI nr
Match: XP_008442180.1 (PREDICTED: 60S ribosomal protein L35a-1-like [Cucumis melo] >KAA0041236.1 60S ribosomal protein L35a-1-like [Cucumis melo var. makuwa])

HSP 1 Score: 225.7 bits (574), Expect = 2.0e-55
Identity = 107/112 (95.54%), Postives = 111/112 (99.11%), Query Frame = 0


Query: 1   MVKGSKGERVRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTKEEVAWYAGKRLAYIYKA 60
           MVKGS+GER+RLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNT+EEVAWYAGKRLAYIYKA
Sbjct: 1   MVKGSQGERIRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTREEVAWYAGKRLAYIYKA 60

Query: 61  KVKQNGTHYRCIWGKVSRAHGNSGIVRAKFKSNLPPKSMGDKVRVFMYPSNI 113
           KVKQNGTHYRCIWGKVSR HGNSGIVRAKFKSNLPPKSMGDK+RVFMYPSNI
Sbjct: 61  KVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMGDKIRVFMYPSNI 112

[Close]

BLAST of Carg12704 vs. NCBI nr
Match: XP_022967923.1 (60S ribosomal protein L35a-1-like [Cucurbita maxima] >XP_022967925.1 60S ribosomal protein L35a-1-like [Cucurbita maxima] >XP_022967926.1 60S ribosomal protein L35a-1-like [Cucurbita maxima])

HSP 1 Score: 224.9 bits (572), Expect = 3.4e-55
Identity = 107/112 (95.54%), Postives = 110/112 (98.21%), Query Frame = 0


Query: 1   MVKGSKGERVRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTKEEVAWYAGKRLAYIYKA 60
           MVKG +GER+RLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTKEEVAWYAGKRLAYIYKA
Sbjct: 1   MVKGRQGERIRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTKEEVAWYAGKRLAYIYKA 60

Query: 61  KVKQNGTHYRCIWGKVSRAHGNSGIVRAKFKSNLPPKSMGDKVRVFMYPSNI 113
           KVKQNGTHYRCIWGKVSR HGNSGIVRAKFKSNLPPKSMGDK+RVFMYPSNI
Sbjct: 61  KVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMGDKIRVFMYPSNI 112

[Close]

BLAST of Carg12704 vs. NCBI nr
Match: XP_038883794.1 (60S ribosomal protein L35a-1-like [Benincasa hispida])

HSP 1 Score: 224.2 bits (570), Expect = 5.7e-55
Identity = 107/112 (95.54%), Postives = 110/112 (98.21%), Query Frame = 0


Query: 1   MVKGSKGERVRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTKEEVAWYAGKRLAYIYKA 60
           MVKG +GERVRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNT+EEVAWYAGKRLAYIYKA
Sbjct: 1   MVKGRQGERVRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTREEVAWYAGKRLAYIYKA 60

Query: 61  KVKQNGTHYRCIWGKVSRAHGNSGIVRAKFKSNLPPKSMGDKVRVFMYPSNI 113
           KVKQNGTHYRCIWGKVSR HGNSGIVRAKFKSNLPPKSMGDK+RVFMYPSNI
Sbjct: 61  KVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMGDKIRVFMYPSNI 112

[Close]

BLAST of Carg12704 vs. ExPASy Swiss-Prot
Match: Q9LMK0 (60S ribosomal protein L35a-1 OS=Arabidopsis thaliana OX=3702 GN=RPL35AA PE=3 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 6.2e-52
Identity = 93/112 (83.04%), Postives = 104/112 (92.86%), Query Frame = 0


Query: 1   MVKGSKGERVRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTKEEVAWYAGKRLAYIYKA 60
           MVKG +GERVRLYVRGT+LGYKRSKSNQYP TSL+Q+EGVNT EEV+WY GKR+AYIYKA
Sbjct: 1   MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLVQVEGVNTTEEVSWYKGKRMAYIYKA 60

Query: 61  KVKQNGTHYRCIWGKVSRAHGNSGIVRAKFKSNLPPKSMGDKVRVFMYPSNI 113
           K K+NG+HYRCIWGKV+R HGNSG+VRAKF SNLPPKSMG +VRVFMYPSNI
Sbjct: 61  KTKKNGSHYRCIWGKVTRPHGNSGVVRAKFTSNLPPKSMGSRVRVFMYPSNI 112

[Close]

BLAST of Carg12704 vs. ExPASy Swiss-Prot
Match: Q9C912 (60S ribosomal protein L35a-3 OS=Arabidopsis thaliana OX=3702 GN=RPL35AC PE=3 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 6.2e-52
Identity = 94/112 (83.93%), Postives = 104/112 (92.86%), Query Frame = 0


Query: 1   MVKGSKGERVRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTKEEVAWYAGKRLAYIYKA 60
           MVKG +GERVRLYVRGT+LGYKRSKSNQYP TSL+QIEGVNT+EEV WY GKR+AYIYKA
Sbjct: 1   MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLVQIEGVNTQEEVNWYKGKRMAYIYKA 60

Query: 61  KVKQNGTHYRCIWGKVSRAHGNSGIVRAKFKSNLPPKSMGDKVRVFMYPSNI 113
           K K+NG+HYRCIWGKV+R HGNSG+VRAKF SNLPPKSMG +VRVFMYPSNI
Sbjct: 61  KTKKNGSHYRCIWGKVTRPHGNSGVVRAKFTSNLPPKSMGSRVRVFMYPSNI 112

[Close]

BLAST of Carg12704 vs. ExPASy Swiss-Prot
Match: Q9FZH0 (60S ribosomal protein L35a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL35AB PE=3 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 6.8e-51
Identity = 94/111 (84.68%), Postives = 103/111 (92.79%), Query Frame = 0


Query: 2   VKGSKGERVRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTKEEVAWYAGKRLAYIYKAK 61
           +KG +GERVRLYVRGTVLGYKRSKSNQYP TSLIQIEGVNT+EEV WY GKRLAYIYKAK
Sbjct: 1   MKGRQGERVRLYVRGTVLGYKRSKSNQYPNTSLIQIEGVNTQEEVNWYKGKRLAYIYKAK 60

Query: 62  VKQNGTHYRCIWGKVSRAHGNSGIVRAKFKSNLPPKSMGDKVRVFMYPSNI 113
            K+NG+HYRCIWGKV+R HGNSG+VR+KF SNLPPKSMG +VRVFMYPSNI
Sbjct: 61  TKKNGSHYRCIWGKVTRPHGNSGVVRSKFTSNLPPKSMGARVRVFMYPSNI 111

[Close]

BLAST of Carg12704 vs. ExPASy Swiss-Prot
Match: P51422 (60S ribosomal protein L35a-4 OS=Arabidopsis thaliana OX=3702 GN=RPL35AD PE=3 SV=2)

HSP 1 Score: 200.7 bits (509), Expect = 8.9e-51
Identity = 93/111 (83.78%), Postives = 103/111 (92.79%), Query Frame = 0


Query: 2   VKGSKGERVRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTKEEVAWYAGKRLAYIYKAK 61
           +KG +GERVRLYVRGTVLGYKRSKSNQYP TSL+QIEGVNT+EEV WY GKRLAYIYKAK
Sbjct: 1   MKGRQGERVRLYVRGTVLGYKRSKSNQYPNTSLVQIEGVNTQEEVNWYKGKRLAYIYKAK 60

Query: 62  VKQNGTHYRCIWGKVSRAHGNSGIVRAKFKSNLPPKSMGDKVRVFMYPSNI 113
            K+NG+HYRCIWGKV+R HGNSG+VR+KF SNLPPKSMG +VRVFMYPSNI
Sbjct: 61  TKKNGSHYRCIWGKVTRPHGNSGVVRSKFTSNLPPKSMGARVRVFMYPSNI 111

[Close]

BLAST of Carg12704 vs. ExPASy Swiss-Prot
Match: P41056 (60S ribosomal protein L33-B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RPL33B PE=1 SV=2)

HSP 1 Score: 124.4 bits (311), Expect = 8.1e-28
Identity = 58/105 (55.24%), Postives = 76/105 (72.38%), Query Frame = 0


Query: 8   ERVRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTKEEVAWYAGKRLAYIYKAKVKQNGT 67
           E  RLYV+G  L Y+RSK    P  SLI+IEGV T +E  +Y GKR+AY+Y+A  +  G+
Sbjct: 3   ESHRLYVKGKHLSYQRSKRVNNPNVSLIKIEGVATPQEAQFYLGKRIAYVYRASKEVRGS 62

Query: 68  HYRCIWGKVSRAHGNSGIVRAKFKSNLPPKSMGDKVRVFMYPSNI 113
             R +WGKV+R HGNSG+VRA F++NLP K+ G  VR+F+YPSNI
Sbjct: 63  KIRVMWGKVTRTHGNSGVVRATFRNNLPAKTFGASVRIFLYPSNI 107

[Close]

BLAST of Carg12704 vs. ExPASy TrEMBL
Match: A0A6J1HSC2 (60S ribosomal protein L35a-1-like OS=Cucurbita maxima OX=3661 GN=LOC111466132 PE=3 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 2.3e-57
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0


Query: 1   MVKGSKGERVRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTKEEVAWYAGKRLAYIYKA 60
           MVKGSKGERVRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTKEEVAWYAGKRLAYIYKA
Sbjct: 1   MVKGSKGERVRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTKEEVAWYAGKRLAYIYKA 60

Query: 61  KVKQNGTHYRCIWGKVSRAHGNSGIVRAKFKSNLPPKSMGDKVRVFMYPSNI 113
           KVKQNGTHYRCIWGKVSRAHGNSGIVRAKFKSNLPPKSMGDKVRVFMYPSNI
Sbjct: 61  KVKQNGTHYRCIWGKVSRAHGNSGIVRAKFKSNLPPKSMGDKVRVFMYPSNI 112

[Close]

BLAST of Carg12704 vs. ExPASy TrEMBL
Match: A0A6J1EBM3 (60S ribosomal protein L35a-1-like OS=Cucurbita moschata OX=3662 GN=LOC111432549 PE=3 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 2.3e-57
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0


Query: 1   MVKGSKGERVRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTKEEVAWYAGKRLAYIYKA 60
           MVKGSKGERVRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTKEEVAWYAGKRLAYIYKA
Sbjct: 1   MVKGSKGERVRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTKEEVAWYAGKRLAYIYKA 60

Query: 61  KVKQNGTHYRCIWGKVSRAHGNSGIVRAKFKSNLPPKSMGDKVRVFMYPSNI 113
           KVKQNGTHYRCIWGKVSRAHGNSGIVRAKFKSNLPPKSMGDKVRVFMYPSNI
Sbjct: 61  KVKQNGTHYRCIWGKVSRAHGNSGIVRAKFKSNLPPKSMGDKVRVFMYPSNI 112

[Close]

BLAST of Carg12704 vs. ExPASy TrEMBL
Match: A0A6J1EL43 (60S ribosomal protein L35a-1-like OS=Cucurbita moschata OX=3662 GN=LOC111435550 PE=3 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 4.3e-56
Identity = 108/112 (96.43%), Postives = 111/112 (99.11%), Query Frame = 0


Query: 1   MVKGSKGERVRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTKEEVAWYAGKRLAYIYKA 60
           MVKGS+GER+RLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTKEEVAWYAGKRLAYIYKA
Sbjct: 1   MVKGSQGERIRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTKEEVAWYAGKRLAYIYKA 60

Query: 61  KVKQNGTHYRCIWGKVSRAHGNSGIVRAKFKSNLPPKSMGDKVRVFMYPSNI 113
           KVKQNGTHYRCIWGKVSR HGNSGIVRAKFKSNLPPKSMGDK+RVFMYPSNI
Sbjct: 61  KVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMGDKIRVFMYPSNI 112

[Close]

BLAST of Carg12704 vs. ExPASy TrEMBL
Match: A0A5A7TGR3 (60S ribosomal protein L35a-1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold128G002100 PE=3 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 9.5e-56
Identity = 107/112 (95.54%), Postives = 111/112 (99.11%), Query Frame = 0


Query: 1   MVKGSKGERVRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTKEEVAWYAGKRLAYIYKA 60
           MVKGS+GER+RLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNT+EEVAWYAGKRLAYIYKA
Sbjct: 1   MVKGSQGERIRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTREEVAWYAGKRLAYIYKA 60

Query: 61  KVKQNGTHYRCIWGKVSRAHGNSGIVRAKFKSNLPPKSMGDKVRVFMYPSNI 113
           KVKQNGTHYRCIWGKVSR HGNSGIVRAKFKSNLPPKSMGDK+RVFMYPSNI
Sbjct: 61  KVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMGDKIRVFMYPSNI 112

[Close]

BLAST of Carg12704 vs. ExPASy TrEMBL
Match: A0A1S3B4N4 (60S ribosomal protein L35a-1-like OS=Cucumis melo OX=3656 GN=LOC103486112 PE=3 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 9.5e-56
Identity = 107/112 (95.54%), Postives = 111/112 (99.11%), Query Frame = 0


Query: 1   MVKGSKGERVRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTKEEVAWYAGKRLAYIYKA 60
           MVKGS+GER+RLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNT+EEVAWYAGKRLAYIYKA
Sbjct: 1   MVKGSQGERIRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTREEVAWYAGKRLAYIYKA 60

Query: 61  KVKQNGTHYRCIWGKVSRAHGNSGIVRAKFKSNLPPKSMGDKVRVFMYPSNI 113
           KVKQNGTHYRCIWGKVSR HGNSGIVRAKFKSNLPPKSMGDK+RVFMYPSNI
Sbjct: 61  KVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMGDKIRVFMYPSNI 112

[Close]

BLAST of Carg12704 vs. TAIR 10
Match: AT1G07070.1 (Ribosomal protein L35Ae family protein )

HSP 1 Score: 204.5 bits (519), Expect = 4.4e-53
Identity = 93/112 (83.04%), Postives = 104/112 (92.86%), Query Frame = 0


Query: 1   MVKGSKGERVRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTKEEVAWYAGKRLAYIYKA 60
           MVKG +GERVRLYVRGT+LGYKRSKSNQYP TSL+Q+EGVNT EEV+WY GKR+AYIYKA
Sbjct: 1   MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLVQVEGVNTTEEVSWYKGKRMAYIYKA 60

Query: 61  KVKQNGTHYRCIWGKVSRAHGNSGIVRAKFKSNLPPKSMGDKVRVFMYPSNI 113
           K K+NG+HYRCIWGKV+R HGNSG+VRAKF SNLPPKSMG +VRVFMYPSNI
Sbjct: 61  KTKKNGSHYRCIWGKVTRPHGNSGVVRAKFTSNLPPKSMGSRVRVFMYPSNI 112

[Close]

BLAST of Carg12704 vs. TAIR 10
Match: AT1G74270.1 (Ribosomal protein L35Ae family protein )

HSP 1 Score: 204.5 bits (519), Expect = 4.4e-53
Identity = 94/112 (83.93%), Postives = 104/112 (92.86%), Query Frame = 0


Query: 1   MVKGSKGERVRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTKEEVAWYAGKRLAYIYKA 60
           MVKG +GERVRLYVRGT+LGYKRSKSNQYP TSL+QIEGVNT+EEV WY GKR+AYIYKA
Sbjct: 1   MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLVQIEGVNTQEEVNWYKGKRMAYIYKA 60

Query: 61  KVKQNGTHYRCIWGKVSRAHGNSGIVRAKFKSNLPPKSMGDKVRVFMYPSNI 113
           K K+NG+HYRCIWGKV+R HGNSG+VRAKF SNLPPKSMG +VRVFMYPSNI
Sbjct: 61  KTKKNGSHYRCIWGKVTRPHGNSGVVRAKFTSNLPPKSMGSRVRVFMYPSNI 112

[Close]

BLAST of Carg12704 vs. TAIR 10
Match: AT1G41880.1 (Ribosomal protein L35Ae family protein )

HSP 1 Score: 201.1 bits (510), Expect = 4.8e-52
Identity = 94/111 (84.68%), Postives = 103/111 (92.79%), Query Frame = 0


Query: 2   VKGSKGERVRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTKEEVAWYAGKRLAYIYKAK 61
           +KG +GERVRLYVRGTVLGYKRSKSNQYP TSLIQIEGVNT+EEV WY GKRLAYIYKAK
Sbjct: 1   MKGRQGERVRLYVRGTVLGYKRSKSNQYPNTSLIQIEGVNTQEEVNWYKGKRLAYIYKAK 60

Query: 62  VKQNGTHYRCIWGKVSRAHGNSGIVRAKFKSNLPPKSMGDKVRVFMYPSNI 113
            K+NG+HYRCIWGKV+R HGNSG+VR+KF SNLPPKSMG +VRVFMYPSNI
Sbjct: 61  TKKNGSHYRCIWGKVTRPHGNSGVVRSKFTSNLPPKSMGARVRVFMYPSNI 111

[Close]

BLAST of Carg12704 vs. TAIR 10
Match: AT3G55750.1 (Ribosomal protein L35Ae family protein )

HSP 1 Score: 200.7 bits (509), Expect = 6.3e-52
Identity = 93/111 (83.78%), Postives = 103/111 (92.79%), Query Frame = 0


Query: 2   VKGSKGERVRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTKEEVAWYAGKRLAYIYKAK 61
           +KG +GERVRLYVRGTVLGYKRSKSNQYP TSL+QIEGVNT+EEV WY GKRLAYIYKAK
Sbjct: 1   MKGRQGERVRLYVRGTVLGYKRSKSNQYPNTSLVQIEGVNTQEEVNWYKGKRLAYIYKAK 60

Query: 62  VKQNGTHYRCIWGKVSRAHGNSGIVRAKFKSNLPPKSMGDKVRVFMYPSNI 113
            K+NG+HYRCIWGKV+R HGNSG+VR+KF SNLPPKSMG +VRVFMYPSNI
Sbjct: 61  TKKNGSHYRCIWGKVTRPHGNSGVVRSKFTSNLPPKSMGARVRVFMYPSNI 111

The following BLAST results are available for this feature:

BLAST of Carg12704 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022925254.1	4.7e-57	100.00	60S ribosomal protein L35a-1-like [Cucurbita moschata] >XP_022925256.1 60S ribos...	[more]
XP_022928725.1	8.8e-56	96.43	60S ribosomal protein L35a-1-like [Cucurbita moschata] >XP_022928726.1 60S ribos...	[more]
XP_008442180.1	2.0e-55	95.54	PREDICTED: 60S ribosomal protein L35a-1-like [Cucumis melo] >KAA0041236.1 60S ri...	[more]
XP_022967923.1	3.4e-55	95.54	60S ribosomal protein L35a-1-like [Cucurbita maxima] >XP_022967925.1 60S ribosom...	[more]
XP_038883794.1	5.7e-55	95.54	60S ribosomal protein L35a-1-like [Benincasa hispida]	[more]

BLAST of Carg12704 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LMK0	6.2e-52	83.04	60S ribosomal protein L35a-1 OS=Arabidopsis thaliana OX=3702 GN=RPL35AA PE=3 SV=...	[more]
Q9C912	6.2e-52	83.93	60S ribosomal protein L35a-3 OS=Arabidopsis thaliana OX=3702 GN=RPL35AC PE=3 SV=...	[more]
Q9FZH0	6.8e-51	84.68	60S ribosomal protein L35a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL35AB PE=3 SV=...	[more]
P51422	8.9e-51	83.78	60S ribosomal protein L35a-4 OS=Arabidopsis thaliana OX=3702 GN=RPL35AD PE=3 SV=...	[more]
P41056	8.1e-28	55.24	60S ribosomal protein L33-B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S2...	[more]

BLAST of Carg12704 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HSC2	2.3e-57	100.00	60S ribosomal protein L35a-1-like OS=Cucurbita maxima OX=3661 GN=LOC111466132 PE...	[more]
A0A6J1EBM3	2.3e-57	100.00	60S ribosomal protein L35a-1-like OS=Cucurbita moschata OX=3662 GN=LOC111432549 ...	[more]
A0A6J1EL43	4.3e-56	96.43	60S ribosomal protein L35a-1-like OS=Cucurbita moschata OX=3662 GN=LOC111435550 ...	[more]
A0A5A7TGR3	9.5e-56	95.54	60S ribosomal protein L35a-1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A1S3B4N4	9.5e-56	95.54	60S ribosomal protein L35a-1-like OS=Cucumis melo OX=3656 GN=LOC103486112 PE=3 S...	[more]

BLAST of Carg12704 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G07070.1	4.4e-53	83.04	Ribosomal protein L35Ae family protein	[more]
AT1G74270.1	4.4e-53	83.93	Ribosomal protein L35Ae family protein	[more]
AT1G41880.1	4.8e-52	84.68	Ribosomal protein L35Ae family protein	[more]
AT3G55750.1	6.3e-52	83.78	Ribosomal protein L35Ae family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038661	Ribosomal protein L35A superfamily	GENE3D	2.40.10.190	translation elongation factor selb, chain A, domain 4	coord: 6..112 e-value: 3.7E-50 score: 170.4
IPR001780	Ribosomal protein L35A	PFAM	PF01247	Ribosomal_L35Ae	coord: 12..106 e-value: 5.6E-43 score: 145.1
IPR001780	Ribosomal protein L35A	PANTHER	PTHR10902	60S RIBOSOMAL PROTEIN L35A	coord: 1..112
IPR001780	Ribosomal protein L35A	HAMAP	MF_00573	Ribosomal_L35Ae	coord: 14..106 score: 25.215836
None	No IPR available	PANTHER	PTHR10902:SF20	60S RIBOSOMAL PROTEIN L35A-1	coord: 1..112
IPR018266	Ribosomal protein L35Ae, conserved site	PROSITE	PS01105	RIBOSOMAL_L35AE	coord: 74..95
IPR009000	Translation protein, beta-barrel domain superfamily	SUPERFAMILY	50447	Translation proteins	coord: 12..106

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg12704-RA	Carg12704-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015031	protein transport
biological_process	GO:0006412	translation
biological_process	GO:0016192	vesicle-mediated transport
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005789	endoplasmic reticulum membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome